pints-team/pints issues and pull requests

#1703 - Updated copyright date in LICENSE.md

Pull Request - State: open - Opened by MichaelClerx 25 days ago - 1 comment

#1702 - Rt notebook fix 2

Pull Request - State: open - Opened by MichaelClerx 25 days ago - 2 comments

#1701 - Notebook tests fixes

Pull Request - State: closed - Opened by MichaelClerx about 1 month ago - 1 comment

#1700 - LogPDF storage issue with multi-chain methods

Pull Request - State: closed - Opened by MichaelClerx about 1 month ago - 2 comments

#1699 - Stopped testing 3.7, added testing on 3.12 and 3.13

Pull Request - State: closed - Opened by MichaelClerx about 1 month ago - 1 comment

#1698 - Updated docs for optimiser and CMA-ES. Added proper exception for CMAES not supporting 1-d.

Pull Request - State: closed - Opened by MichaelClerx about 1 month ago - 1 comment

#1697 - Missing dual averaging docstring info

Issue - State: open - Opened by MichaelClerx about 1 month ago
Labels: documentation

#1696 - Update methods overview

Issue - State: open - Opened by MichaelClerx about 1 month ago
Labels: documentation

#1695 - Add note to CMA-ES about interpretation of sigma

Issue - State: closed - Opened by MichaelClerx about 1 month ago
Labels: documentation

#1694 - Wrong log_pdf evaluations returned?

Issue - State: open - Opened by MichaelClerx about 1 month ago - 2 comments

#1693 - Added a note about sigma0 to documentation.

Pull Request - State: closed - Opened by RomanSyunyaev about 1 month ago - 1 comment

#1692 - Switch setup.py to pyproject.toml?

Issue - State: open - Opened by MichaelClerx about 2 months ago
Labels: installation

#1691 - `SingleChainMCMC` class errors with `set_log_pdf_storage(True)`

Issue - State: closed - Opened by MarcBerliner about 2 months ago - 6 comments
Labels: bug

#1690 - Error from empty set_population_size() call in PopulationBasedOptimiser

Issue - State: open - Opened by mjowen 3 months ago - 1 comment
Labels: bug

#1689 - Autograd notebook is broken, autograd is EOS

Issue - State: closed - Opened by MichaelClerx 6 months ago - 1 comment

#1688 - Added missing documentation for weights parameter in SumOfSquaresError

Pull Request - State: closed - Opened by MichaelClerx 6 months ago - 1 comment
Labels: documentation

#1687 - Update link to source in Haario Bardenet ACMC

Pull Request - State: closed - Opened by FelixNoessler 7 months ago - 3 comments

#1531 - Updates for numpy 2 compatibility

Pull Request - State: closed - Opened by MichaelClerx 8 months ago - 6 comments

#1530 - Numpy 2 compatibility

Issue - State: closed - Opened by MichaelClerx 8 months ago - 4 comments
Labels: code and design

#1529 - Error when attempting to run in parallel mode

Issue - State: closed - Opened by feresro 8 months ago - 5 comments

#1528 - Updated github actions versions.

Pull Request - State: closed - Opened by MichaelClerx 8 months ago - 2 comments

#1527 - Adds a ComposedBoundaries, similar to ComposedLogPrior.

Pull Request - State: closed - Opened by MichaelClerx 8 months ago - 2 comments

#1526 - Move the censored log-likelihood class and tests to the correct position

Pull Request - State: closed - Opened by k-shep 10 months ago

#1525 - Put log-likelihood classes in alphabetical order

Issue - State: closed - Opened by k-shep 10 months ago

#1524 - Add notice to CMA-ES to explain it does not support 1d problems

Issue - State: closed - Opened by MichaelClerx 10 months ago - 1 comment
Labels: feature, documentation

#1523 - Rt Notebook example - corrected

Pull Request - State: closed - Opened by I-Bouros 10 months ago - 6 comments

#1522 - Rt notebook example

Pull Request - State: closed - Opened by I-Bouros 11 months ago - 3 comments

#1521 - Added value-based test for gradient descent.

Pull Request - State: closed - Opened by MichaelClerx 11 months ago - 2 comments

#1520 - Updated first examples to show model-free case.

Pull Request - State: closed - Opened by MichaelClerx 11 months ago - 9 comments

#1519 - Update docs for ErrorMeasure and LogPDF etc to show call

Issue - State: open - Opened by MichaelClerx 11 months ago
Labels: documentation

#1518 - Stan array syntax

Pull Request - State: closed - Opened by MichaelClerx about 1 year ago - 3 comments

#1517 - Fixed bug in XNES covariance matrix update.

Pull Request - State: closed - Opened by MichaelClerx about 1 year ago - 5 comments

#1516 - Stan interface failing due to deprecated syntax

Issue - State: closed - Opened by MichaelClerx about 1 year ago
Labels: bug

#1515 - Xnes issue 1294

Pull Request - State: closed - Opened by MichaelClerx about 1 year ago

#1514 - Remove xnes

Issue - State: closed - Opened by MichaelClerx about 1 year ago - 1 comment
Labels: feature, question

#1513 - Add call to `set_f_guessed_tracking(True)` to examples for relevant methods

Issue - State: open - Opened by MichaelClerx about 1 year ago
Labels: documentation

#1512 - Correct log-likelihood docstrings and make them consistent

Issue - State: open - Opened by k-shep about 1 year ago
Labels: documentation

#1511 - Tests are failing?

Pull Request - State: closed - Opened by MichaelClerx about 1 year ago - 3 comments

#1510 - Merge updates from main into functional testing branch

Pull Request - State: closed - Opened by MichaelClerx about 1 year ago - 1 comment

#1509 - Naming for "xtol" and "ftol" criteria in PINTS (max_unchanged_iterations)

Issue - State: closed - Opened by MichaelClerx about 1 year ago - 5 comments

#1508 - Allowing xtol and ftol stopping criteria in OptimisationController

Pull Request - State: open - Opened by MichaelClerx about 1 year ago - 1 comment

#1507 - Update examples to use OptimisationController

Pull Request - State: closed - Opened by MichaelClerx about 1 year ago - 1 comment

#1506 - Add note to readme on discrete parameters

Pull Request - State: closed - Opened by MichaelClerx about 1 year ago - 2 comments

#1505 - I612 toy inputs issue

Pull Request - State: closed - Opened by chonlei about 1 year ago - 2 comments

#1504 - Improve CMAES Error message for 1D problems

Issue - State: closed - Opened by I-Bouros about 1 year ago - 1 comment
Labels: easy win

#1503 - Removed units from time headers in controllers.

Pull Request - State: closed - Opened by MichaelClerx about 1 year ago - 2 comments

#1502 - Add "xtol" and "ftol" stopping criteria for optimisers

Issue - State: open - Opened by MichaelClerx over 1 year ago - 11 comments
Labels: feature

#1501 - Update CHANGELOG.md after 1499

Pull Request - State: closed - Opened by MichaelClerx over 1 year ago - 3 comments

#1500 - Added censored log-likelihood and some tests for it

Pull Request - State: closed - Opened by k-shep over 1 year ago - 13 comments

#1499 - LogUniformLogPrior

Pull Request - State: closed - Opened by abillscmu over 1 year ago - 2 comments

#1498 - Add reciprocal distribution prior (LogUniformLogPrior) to help estimate parameters that vary over multiple orders of magnitude

Issue - State: closed - Opened by abillscmu over 1 year ago - 1 comment

#1497 - #1496 replace np.product by np.prod everywhere

Pull Request - State: closed - Opened by DavAug over 1 year ago - 1 comment

#1496 - Deprecation warning: pints.UniformLogPrior

Issue - State: closed - Opened by DavAug over 1 year ago - 1 comment

#1495 - Updated matplotlib.patches. Ellipse syntax to match 3.x version (but still backwards compatible)

Pull Request - State: closed - Opened by MichaelClerx over 1 year ago - 1 comment

#1494 - Add PRIMA optimisers

Issue - State: closed - Opened by zaikunzhang over 1 year ago - 2 comments
Labels: new method

#1493 - Moving to next version

Pull Request - State: closed - Opened by MichaelClerx over 1 year ago - 1 comment

#1492 - Preparing for release 0.5.0

Pull Request - State: closed - Opened by MichaelClerx over 1 year ago - 3 comments

#1491 - Change optimiser examples to use OptimisationController directly

Issue - State: closed - Opened by MichaelClerx over 1 year ago
Labels: documentation

#1490 - Doc fix

Pull Request - State: closed - Opened by MichaelClerx over 1 year ago

#1489 - Renaming master to main

Pull Request - State: closed - Opened by MichaelClerx over 1 year ago - 1 comment

#1488 - Added .readthedocs.yaml

Pull Request - State: closed - Opened by MichaelClerx over 1 year ago - 2 comments

#1487 - Docs no longer build

Issue - State: closed - Opened by MichaelClerx over 1 year ago - 1 comment
Labels: documentation

#1486 - Anyone mind if we rename `master` to `main` ?

Issue - State: closed - Opened by MichaelClerx over 1 year ago - 1 comment
Labels: infrastructure

#1485 - Updated testing from Ubuntu 18+22 to 20+22.

Pull Request - State: closed - Opened by MichaelClerx over 1 year ago - 1 comment

#1484 - I1483 gaussian integrated log uniform log likelihood

Pull Request - State: closed - Opened by chonlei over 1 year ago - 2 comments

#1483 - Create GaussianIntegratedLogUniformLogLikelihood

Issue - State: closed - Opened by chonlei over 1 year ago

#1482 - Docs for ErrorMeasure and other base classes should show call

Issue - State: open - Opened by MichaelClerx over 1 year ago
Labels: documentation

#1481 - Likelihood for censored data

Issue - State: closed - Opened by rccreswell over 1 year ago
Labels: feature

#1480 - Settings of XNES

Issue - State: closed - Opened by ldv1 almost 2 years ago - 2 comments
Labels: question, documentation

#1479 - #1473 remove deprecated decorator

Pull Request - State: closed - Opened by DavAug almost 2 years ago - 13 comments

#1478 - #1477 update badge url

Pull Request - State: closed - Opened by martinjrobins about 2 years ago - 1 comment

#1477 - badges not displaying in readme.md

Issue - State: closed - Opened by martinjrobins about 2 years ago

#1476 - Add testing on 311

Pull Request - State: closed - Opened by MichaelClerx about 2 years ago - 1 comment

#1475 - Temporarily stop tests running on Python 3.11

Pull Request - State: closed - Opened by MichaelClerx about 2 years ago - 2 comments

#1474 - Make "contribution" section a bit less daunting

Pull Request - State: closed - Opened by MichaelClerx about 2 years ago - 2 comments

#1473 - NUTS coroutines don't work on Python 3.11

Issue - State: closed - Opened by MichaelClerx about 2 years ago - 5 comments
Labels: bug, code and design

#1472 - Fixed annulus notebook

Pull Request - State: closed - Opened by MichaelClerx over 2 years ago - 5 comments

#1471 - Can't reproduce Stochastic Degradation model: No module named 'pints.toy.stochastic'

Issue - State: closed - Opened by elizavetasemenova over 2 years ago - 4 comments
Labels: question, installation

#1470 - AdaDelta optimiser

Pull Request - State: open - Opened by MichaelClerx over 2 years ago

#1469 - Tweaks to Adam

Pull Request - State: closed - Opened by MichaelClerx over 2 years ago - 3 comments

#1468 - AdaGrad optimiser

Pull Request - State: open - Opened by MichaelClerx over 2 years ago

#1467 - Header of logged "time" field is wrong

Issue - State: closed - Opened by MichaelClerx over 2 years ago - 3 comments
Labels: bug

#1466 - Added TransformedRectangularBoundaries class.

Pull Request - State: closed - Opened by MichaelClerx over 2 years ago - 1 comment