Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / pinskylab/genomics issues and pull requests

#38 - link for lab protocols within genomics repo is broken

Issue - State: closed - Opened by jahoey over 4 years ago - 3 comments

#37 - misssing gen_ids for 50 fish tagged at < 6.0 cm

Issue - State: closed - Opened by katcatalano over 4 years ago - 2 comments

#36 - Number of fish_indiv changed

Issue - State: closed - Opened by mstuart1 over 5 years ago - 2 comments
Labels: question, urgent

#35 - 06_identity-protocol.Rmd is not assigning the same gen_id to genotype matches

Issue - State: closed - Opened by mstuart1 over 5 years ago
Labels: quality control

#33 - create a gene pop without a "pop" line for package testing

Issue - State: closed - Opened by mstuart1 over 5 years ago - 1 comment
Labels: enhancement, low priority

#32 - test

Issue - State: closed - Opened by mstuart1 over 5 years ago

#31 - Why is APCL17_494 missing from the fish_obs table

Issue - State: closed - Opened by mstuart1 over 5 years ago
Labels: question

#30 - Test issue from slack

Issue - State: closed - Opened by mstuart1 over 5 years ago
Labels: low priority

#29 - fish_indiv clarificaton

Issue - State: closed - Opened by katcatalano over 5 years ago - 1 comment

#28 - Check known issues

Issue - State: open - Opened by mstuart1 over 5 years ago
Labels: quality control, low priority

#27 - Check regenotypes

Issue - State: open - Opened by mstuart1 over 5 years ago
Labels: quality control, low priority

#26 - Check tagged recaptures

Issue - State: closed - Opened by mstuart1 over 5 years ago - 1 comment
Labels: quality control, low priority

#25 - Add a notes column to the fish-obs.Rdata table

Issue - State: closed - Opened by mstuart1 over 5 years ago - 1 comment
Labels: enhancement

#24 - Create a metadata file for the new fish-obs.Rdata table

Issue - State: closed - Opened by mstuart1 over 5 years ago
Labels: enhancement

#23 - Syntax issue on paragraph 35

Pull Request - State: open - Opened by kant almost 6 years ago

#22 - Identity Analysis parameters for Cervus

Issue - State: closed - Opened by mstuart1 almost 6 years ago - 37 comments
Labels: help wanted, question

#21 - protocols lack continuity

Issue - State: closed - Opened by mstuart1 almost 6 years ago - 1 comment
Labels: quality control, low priority

#20 - Define loci to be used for identity and parentage analysis

Issue - State: closed - Opened by mstuart1 almost 6 years ago - 16 comments

#19 - how to remove recaptured fish from genepop

Issue - State: closed - Opened by mstuart1 almost 6 years ago - 6 comments
Labels: question, urgent

#18 - some recaptured fish lack recap_ids

Issue - State: closed - Opened by mstuart1 almost 6 years ago - 1 comment
Labels: bug, quality control

#17 - refactor remove_regenos.Rmd to sum across columns

Issue - State: closed - Opened by mstuart1 almost 6 years ago
Labels: enhancement, low priority

#16 - Genepop won't write to be readable by Cervus

Issue - State: closed - Opened by mstuart1 almost 6 years ago - 3 comments
Labels: bug, urgent

#14 - ligation/gen_ids in seq 17 data but not seq 33 data

Issue - State: closed - Opened by katcatalano almost 6 years ago
Labels: quality control

#13 - fish with same tag_id but different gen_id

Issue - State: closed - Opened by katcatalano almost 6 years ago - 4 comments
Labels: help wanted, question

#12 - LD protocol

Issue - State: closed - Opened by katcatalano almost 6 years ago - 1 comment

#11 - APOC and APFR in seq03-33 genepop

Issue - State: closed - Opened by katcatalano almost 6 years ago - 4 comments
Labels: quality control

#10 - fish in seq03-33 without gen_id

Issue - State: closed - Opened by katcatalano almost 6 years ago - 6 comments
Labels: bug

#9 - Access transition sizes from other scripts

Issue - State: closed - Opened by agdedrick almost 6 years ago - 2 comments

#7 - recap_id is NA for some fish that are output as recaptured by the recaptured-fish script

Issue - State: closed - Opened by mstuart1 almost 6 years ago - 1 comment
Labels: bug

#6 - fish in 2012-2015 sequencing data without gen_ids

Issue - State: closed - Opened by katcatalano almost 6 years ago - 5 comments

#5 - genepop file with column names as dDocent contig ID

Issue - State: closed - Opened by katcatalano almost 6 years ago - 1 comment

#4 - ligation IDs appended with .F

Issue - State: closed - Opened by katcatalano almost 6 years ago - 1 comment
Labels: question

#3 - gen_helpers.R - bad function

Issue - State: closed - Opened by mstuart1 over 7 years ago - 1 comment
Labels: bug

#2 - Review code in Genetics/code and make sure all changes are good

Issue - State: closed - Opened by mstuart1 over 7 years ago - 1 comment
Labels: enhancement

#1 - Review code in Genetics/old and make sure all changes are good

Issue - State: closed - Opened by mstuart1 over 7 years ago - 2 comments
Labels: enhancement