pinskylab/OceanAdapt issues and pull requests

#159 - Confirm that we use correction factors for Gulf of St. Lawrence South?

Issue - State: open - Opened by zoekitchel about 2 years ago - 2 comments
Labels: question 🤔, quality control

#158 - add check for repeated observations

Issue - State: open - Opened by zoekitchel over 2 years ago - 2 comments
Labels: fix 🛠

#157 - species naming issues

Issue - State: open - Opened by mikeallen-eco almost 3 years ago

#156 - Unusual depth profile for Gulf of St Lawrence North

Issue - State: open - Opened by mikeallen-eco almost 3 years ago

#155 - Downloadable animations/movie

Issue - State: open - Opened by mpinsky about 3 years ago
Labels: enhancement ✨

#154 - compile.R removes erroneous "-9999" for WTCPUE, should be for NUMCPUE

Issue - State: open - Opened by zoekitchel about 3 years ago - 1 comment
Labels: question 🤔, fix 🛠

#153 - trouble updating the data on the website

Issue - State: closed - Opened by mikeallen-eco about 3 years ago - 2 comments

#152 - be careful with left_join() for Maritimes adding extra rows for some species

Issue - State: closed - Opened by zoekitchel about 3 years ago - 4 comments
Labels: fix 🛠

#151 - NEUS AREA column misinterpreted as numerical value

Issue - State: open - Opened by zoekitchel about 3 years ago
Labels: invalid 𝗫, fix 🛠

#150 - remove WCANN tows categorized as "Unsatisfactory" or "Indeterminate" in Performance column

Issue - State: open - Opened by zoekitchel about 3 years ago
Labels: fix 🛠, quality control

#149 - why is wtpcue for SEUS calculated by dividing the biomass by 2 x EFFORT

Issue - State: closed - Opened by zoekitchel about 3 years ago - 2 comments
Labels: help wanted 🖐, question 🤔

#148 - Double Canada Maritimes data and left_join() duplications

Issue - State: open - Opened by mpinsky over 3 years ago
Labels: bug 🐛

#147 - Dat_exploded csv files are too large for GitHub

Issue - State: open - Opened by df511 over 3 years ago

#146 - Conversion factor problems with NEUS data

Issue - State: closed - Opened by df511 over 3 years ago - 8 comments
Labels: bug 🐛, fix 🛠

#145 - difficult to search on front end

Issue - State: open - Opened by zoekitchel over 3 years ago
Labels: bug 🐛, website

#144 - Add family to add-spp-to-taxonomy.Rmd

Issue - State: open - Opened by df511 over 3 years ago
Labels: enhancement ✨, low priority 😴

#143 - Fix broken links to data contributors in "our method" on website

Issue - State: open - Opened by df511 over 3 years ago

#142 - Compile and save haul-level data

Issue - State: open - Opened by afredston over 3 years ago
Labels: enhancement ✨

#141 - Suggestions for OAGenerateRasterFiles.py

Issue - State: closed - Opened by df511 over 3 years ago - 3 comments

#140 - 2020 Data Acquisition

Issue - State: closed - Opened by df511 almost 4 years ago - 13 comments

#139 - Add QAQC for Taxonomy

Issue - State: closed - Opened by df511 almost 4 years ago - 8 comments

#138 - Package versions and reading CSV files tag df511

Issue - State: closed - Opened by john-f-kennedy-zz almost 4 years ago - 2 comments

#137 - Depth missing from Southern GSL Data

Issue - State: closed - Opened by df511 almost 4 years ago

#136 - Southern Gulf of St. Lawrence - no depth data available

Issue - State: open - Opened by df511 almost 4 years ago

#135 - Canadian Pacific Region - survey frequency mismatch

Issue - State: closed - Opened by df511 over 4 years ago - 1 comment

#134 - Contribute OceanAdapt data to Map of Life?

Issue - State: open - Opened by mpinsky over 4 years ago
Labels: enhancement ✨

#133 - Contribute OceanAdapt data/outputs to GEO BON data portal?

Issue - State: open - Opened by mpinsky over 4 years ago
Labels: enhancement ✨

#132 - Add data for new Canadian regions

Issue - State: closed - Opened by mpinsky over 4 years ago - 8 comments
Labels: enhancement ✨

#131 - all-regions-full.csv.zip has doubled data in it

Issue - State: closed - Opened by mpinsky over 4 years ago
Labels: bug 🐛, update 👆🗓, fix 🛠

#130 - Create DOI for each database release

Issue - State: open - Opened by mpinsky over 4 years ago - 1 comment
Labels: enhancement ✨

#129 - Update with Scotian Shelf 2019 Data

Issue - State: closed - Opened by df511 over 4 years ago - 1 comment

#128 - Cleaning for 2020 release

Issue - State: closed - Opened by mpinsky over 4 years ago

#127 - Separate data trimming for maps vs. centroids

Issue - State: closed - Opened by mpinsky over 4 years ago
Labels: enhancement ✨

#126 - Switch hq_removed plots to png

Issue - State: closed - Opened by mpinsky over 4 years ago
Labels: enhancement ✨

#125 - Decide how to handle missing strata for SEUS Fall 2018

Issue - State: open - Opened by mpinsky over 4 years ago - 2 comments
Labels: bug 🐛, update 👆🗓

#124 - Revisit how to trim years/strata for Gulf of Mexico

Issue - State: open - Opened by mpinsky over 4 years ago - 4 comments
Labels: enhancement ✨, quality control

#123 - Decide how to handle missing strata for Scotian Shelf 2018

Issue - State: open - Opened by mpinsky over 4 years ago - 1 comment
Labels: bug 🐛, update 👆🗓

#122 - Explore and recreate previous commits by M. Stuart from December 2019 - March 2020

Issue - State: open - Opened by df511 over 4 years ago - 1 comment

#121 - Inf wtcpue values for Southeast US Summer

Issue - State: open - Opened by mpinsky almost 5 years ago
Labels: quality control

#120 - Apply a terms of use or license to OceanAdapt

Issue - State: open - Opened by mpinsky almost 5 years ago - 2 comments
Labels: meta 🌨, website

#119 - Broken link for Detailed Metadata

Issue - State: closed - Opened by mpinsky almost 5 years ago - 3 comments

#118 - Add tow definition to each region, speed, duration

Issue - State: open - Opened by mstuart1 almost 5 years ago

#117 - Explain how national averages change through time.

Issue - State: open - Opened by mstuart1 almost 5 years ago - 1 comment
Labels: enhancement ✨

#116 - Create a docker file to preserve the OceanAdapt version environment

Issue - State: closed - Opened by mstuart1 almost 5 years ago - 4 comments
Labels: enhancement ✨

#115 - change ai compile code to remove parsing errors

Issue - State: closed - Opened by mstuart1 almost 5 years ago
Labels: enhancement ✨

#114 - Change neus source

Pull Request - State: closed - Opened by mstuart1 almost 5 years ago

#113 - combine code for NEUS spring and fall

Issue - State: closed - Opened by mstuart1 almost 5 years ago
Labels: quality control

#112 - remove HAULVALUE = B from gmex hauls

Issue - State: closed - Opened by mstuart1 almost 5 years ago

#111 - remove stratum 01990 - “Offshore” - “Outside all existing strata” from NEUS compiled

Issue - State: closed - Opened by mstuart1 almost 5 years ago

#110 - add albatross conversion factor to expcatchnum for neus public data

Issue - State: closed - Opened by mstuart1 almost 5 years ago - 3 comments
Labels: quality control

#109 - remove strata 07940 and 07980 from NEUS

Issue - State: closed - Opened by mstuart1 almost 5 years ago
Labels: quality control

#108 - Add dates to the news on the main Readme page

Issue - State: closed - Opened by mpinsky almost 5 years ago
Labels: enhancement ✨

#107 - Species names in the projections dataset compared to historical trawl data

Issue - State: closed - Opened by mstuart1 almost 5 years ago - 3 comments
Labels: quality control

#106 - User questions about raw vs. clean data

Issue - State: closed - Opened by mstuart1 almost 5 years ago - 1 comment

#105 - fix purple coneflower in Gulf of Alaska common names - should be urchin.

Issue - State: closed - Opened by mstuart1 about 5 years ago - 1 comment
Labels: bug 🐛, quality control

#104 - merge gh-pages

Pull Request - State: closed - Opened by mstuart1 about 5 years ago - 1 comment

#103 - Change "value" to "biomass per tow" in the map legend

Issue - State: closed - Opened by mstuart1 about 5 years ago - 3 comments
Labels: bug 🐛, website

#102 - Is the NEUS ftp site a valid data source?

Issue - State: closed - Opened by mstuart1 about 5 years ago - 3 comments
Labels: quality control

#101 - replace explode zeros with pivot_wider pivot longer solution if it is faster

Issue - State: closed - Opened by mstuart1 about 5 years ago - 1 comment
Labels: enhancement ✨

#100 - References to add for regional metaData pages

Issue - State: closed - Opened by mpinsky about 5 years ago - 1 comment
Labels: meta 🌨

#99 - Add clean whitespace to data import of regions

Issue - State: open - Opened by mstuart1 over 5 years ago

#98 - Strange value for Echinoidea in spp column

Issue - State: open - Opened by mstuart1 over 5 years ago - 2 comments
Labels: bug 🐛

#97 - Taxonomic cleaning

Issue - State: closed - Opened by AquaAuma over 5 years ago - 1 comment
Labels: bug 🐛

#96 - TS: cite the Government of Canada’s policy for the Canadian Data

Issue - State: open - Opened by mstuart1 over 5 years ago - 1 comment
Labels: website

#95 - TS: Add Scotian Shelf trawl surveys dataset to the data contributions

Issue - State: closed - Opened by mstuart1 over 5 years ago - 1 comment
Labels: website

#94 - TS: make method text more transboundary in About Us

Issue - State: closed - Opened by mstuart1 over 5 years ago
Labels: website

#93 - TS: Include Canada in partnership on About Us page

Issue - State: closed - Opened by mstuart1 over 5 years ago
Labels: website

#92 - RG: Add info on data sources and analysis to all Regional pages

Issue - State: open - Opened by mstuart1 over 5 years ago - 1 comment
Labels: meta 🌨, website

#91 - Ggplot test plots

Pull Request - State: closed - Opened by mstuart1 over 5 years ago

#90 - image for readme

Issue - State: closed - Opened by mstuart1 over 5 years ago

#89 - West Coast Triennial region has a far higher wtcpue

Issue - State: closed - Opened by mstuart1 over 5 years ago - 1 comment
Labels: bug 🐛

#88 - Scotian Shelf fall and spring are only a few years

Issue - State: closed - Opened by mpinsky over 5 years ago - 6 comments
Labels: question 🤔

#87 - Scotian Shelf Summer has duplicate values in dat exploded

Issue - State: closed - Opened by mstuart1 over 5 years ago - 2 comments

#86 - Starting with a species instead of a region

Issue - State: closed - Opened by mstuart1 over 5 years ago - 1 comment
Labels: enhancement ✨, low priority 😴

#85 - Are thornyhead centroids too shallow

Issue - State: closed - Opened by mstuart1 over 5 years ago - 3 comments
Labels: question 🤔

#84 - Check if species are in projections but not in historical data

Issue - State: open - Opened by mstuart1 over 5 years ago - 3 comments
Labels: bug 🐛, enhancement ✨, website

#83 - Missing projections in new release

Issue - State: closed - Opened by bselden over 5 years ago - 1 comment

#82 - complete_R_script.R performs differently based on which version of data.table package is installed.

Issue - State: closed - Opened by mstuart1 over 5 years ago - 1 comment
Labels: bug 🐛, version issue

#81 - Does OceanAdapt recognize the 2008 gear change?

Issue - State: closed - Opened by mstuart1 over 5 years ago - 1 comment
Labels: help wanted 🖐, question 🤔, waiting for feedback

#80 - should we be removing these rows from WCANN?

Issue - State: closed - Opened by mstuart1 over 5 years ago - 1 comment
Labels: question 🤔, fix 🛠, low priority 😴

#79 - update download_data.R to be only scripted steps

Issue - State: closed - Opened by mstuart1 over 5 years ago

#78 - update README in data_raw

Issue - State: closed - Opened by mstuart1 over 5 years ago
Labels: meta 🌨, fix 🛠, low priority 😴

#77 - Make sure metadata answers these questions

Issue - State: open - Opened by mstuart1 over 5 years ago
Labels: meta 🌨, fix 🛠, low priority 😴

#76 - Beautify test plots

Issue - State: closed - Opened by mstuart1 over 5 years ago
Labels: low priority 😴

#75 - 2018 Scotian shelf has spp that are not in the tax list

Issue - State: closed - Opened by mstuart1 over 5 years ago - 2 comments
Labels: update 👆🗓, fix 🛠

#74 - Update Scotian shelf data with 2018 numbers

Issue - State: closed - Opened by mstuart1 over 5 years ago - 1 comment
Labels: update 👆🗓

#73 - Test release

Pull Request - State: closed - Opened by mstuart1 over 5 years ago

#72 - Send updated zip file to Daniel

Issue - State: closed - Opened by mstuart1 over 5 years ago - 1 comment
Labels: update 👆🗓

#71 - Run zip file on another computer to make sure it works

Issue - State: closed - Opened by mstuart1 over 5 years ago - 2 comments
Labels: update 👆🗓

#70 - Source stratum area instead of calculating

Issue - State: closed - Opened by mstuart1 over 5 years ago - 9 comments
Labels: fix 🛠, waiting for feedback

#69 - metaData to only hold metadata

Issue - State: closed - Opened by mpinsky over 5 years ago - 1 comment
Labels: enhancement ✨

#68 - Write an rmd that generates update report

Issue - State: closed - Opened by mstuart1 over 5 years ago
Labels: enhancement ✨, low priority 😴

#67 - Investigate scientific names

Issue - State: open - Opened by mstuart1 over 5 years ago
Labels: question 🤔, low priority 😴

#66 - Make metadata more visible and readable

Issue - State: open - Opened by mstuart1 over 5 years ago - 9 comments
Labels: enhancement ✨, meta 🌨, low priority 😴

#65 - Update README.md

Pull Request - State: closed - Opened by mstuart1 over 5 years ago
Labels: low priority 😴

#64 - Update 2019

Pull Request - State: closed - Opened by mstuart1 almost 6 years ago
Labels: update 👆🗓

#63 - Add progress bar to long running sections, like dat exploded

Issue - State: open - Opened by mstuart1 almost 6 years ago
Labels: enhancement ✨, low priority 😴

#62 - Update2019

Pull Request - State: closed - Opened by mstuart1 almost 6 years ago - 1 comment

#61 - Clean up unused branches after merge

Issue - State: closed - Opened by mpinsky almost 6 years ago - 1 comment

#60 - Update2018

Pull Request - State: closed - Opened by mstuart1 about 6 years ago - 1 comment

GitHub / pinskylab/OceanAdapt issues and pull requests