pinellolab/crispr-bean issues and pull requests

#45 - Debug with duplicated mapping

Pull Request - State: closed - Opened by jykr 3 months ago

#44 - Proliferation model (initial version) and improved mapping

Pull Request - State: closed - Opened by jykr 6 months ago

#43 - add docs for sgRNA output

Pull Request - State: closed - Opened by jykr 8 months ago

#42 - Add stable per-sgRNA information as `bean run` output

Pull Request - State: closed - Opened by jykr 8 months ago
Labels: documentation, enhancement

#41 - Fast-forward

Pull Request - State: closed - Opened by jykr 8 months ago

#40 - update math

Pull Request - State: closed - Opened by jykr 8 months ago

#39 - add markdown directly?

Pull Request - State: closed - Opened by jykr 8 months ago

#38 - Add model doc

Pull Request - State: closed - Opened by jykr 8 months ago

#37 - Add batch integration with `bean build-prior` by feeding in custom prior for the variants

Pull Request - State: closed - Opened by jykr 8 months ago

#36 - npy_intp

Pull Request - State: closed - Opened by jykr 8 months ago

#35 - Add warning message and exit for survival screen if editing information does not exist

Issue - State: open - Opened by jykr 8 months ago

#34 - update tutorial docs

Pull Request - State: closed - Opened by jykr 9 months ago

#33 - Help with running the examples?

Issue - State: closed - Opened by timothy-barry 9 months ago - 5 comments

#32 - Allow bean run tiling for untranslated --allele-df-key

Pull Request - State: closed - Opened by jykr 9 months ago

#31 - Save reporter structure during counting

Pull Request - State: closed - Opened by jykr 9 months ago

#30 - Update to v1.2.4

Pull Request - State: closed - Opened by jykr 9 months ago
Labels: bug, documentation, enhancement

#29 - Troubleshoot dirty output (Unnamed: X columns)

Issue - State: closed - Opened by jykr 10 months ago

#28 - sharedarrray installation error

Issue - State: closed - Opened by jykr 10 months ago
Labels: bug

#27 - Add example for `bean-create-screen`

Issue - State: closed - Opened by jykr 10 months ago
Labels: documentation, enhancement

#26 - Installation error with pyx

Issue - State: closed - Opened by jykr 10 months ago - 2 comments
Labels: bug

#25 - Update README.md

Pull Request - State: closed - Opened by jykr 10 months ago

#24 - Fix argument file

Pull Request - State: closed - Opened by jykr 10 months ago

#23 - add support for dual editor

Pull Request - State: closed - Opened by jykr 10 months ago

#22 - Fix pytest count output folder

Pull Request - State: closed - Opened by jykr 10 months ago

#21 - v1.0

Pull Request - State: closed - Opened by jykr 11 months ago

#20 - Move documentation and add support for the survival screens

Pull Request - State: closed - Opened by jykr 11 months ago

#19 - Fast forward

Pull Request - State: closed - Opened by jykr 11 months ago

#18 - Dev

Pull Request - State: closed - Opened by jykr 11 months ago

#17 - Debug translation & run

Pull Request - State: closed - Opened by jykr about 1 year ago

#16 - v0.3.0

Pull Request - State: closed - Opened by jykr about 1 year ago

#15 - Allow multi-condition screen design

Pull Request - State: closed - Opened by jykr about 1 year ago

#14 - Add editing preference profiling

Pull Request - State: closed - Opened by jykr about 1 year ago

#13 - Incorporating updates into main branch

Pull Request - State: closed - Opened by jykr over 1 year ago

#12 - Standardize input column names

Issue - State: closed - Opened by jykr over 1 year ago

#11 - Create index.md

Pull Request - State: closed - Opened by jykr over 1 year ago

#10 - Update README.md

Pull Request - State: closed - Opened by jykr over 1 year ago

#9 - Model update on fitting noise for accessibility-scaled pi and write scaled editing rate as output

Pull Request - State: closed - Opened by jykr almost 2 years ago

#8 - Cleaning up the code with formatting & add script functionalities

Pull Request - State: closed - Opened by jykr almost 2 years ago

#7 - Update docs

Pull Request - State: closed - Opened by jykr almost 2 years ago

#6 - Update main figures and add usage examples

Issue - State: closed - Opened by jykr almost 2 years ago
Labels: documentation

#5 - Move allele counts from uns to structured dataframe

Issue - State: closed - Opened by jykr about 2 years ago - 1 comment

#4 - preserve varm, obsm in slicing

Issue - State: closed - Opened by jykr over 2 years ago - 1 comment

#3 - don't write intermediate file when not specified

Issue - State: closed - Opened by jykr over 2 years ago - 1 comment

#2 - Concat when uns key are not shared

Issue - State: closed - Opened by jykr over 2 years ago - 1 comment

#1 - Troubleshoot guide index column requirement

Issue - State: closed - Opened by jykr over 2 years ago

GitHub / pinellolab/crispr-bean issues and pull requests