physiopy/phys2denoise issues and pull requests

#68 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: open - Opened by pre-commit-ci[bot] 4 months ago - 1 comment
Labels: Internal

#67 - Use heuristic file to specify metric arguments

Issue - State: open - Opened by m-miedema 5 months ago

#66 - Number of time points in metrics returned don't match the number of scans

Issue - State: open - Opened by m-miedema 5 months ago
Labels: Bug

#65 - Update contributors

Pull Request - State: closed - Opened by smoia 6 months ago - 1 comment
Labels: Internal, Documentation

#64 - Add contribution

Pull Request - State: closed - Opened by me-pic 6 months ago - 1 comment
Labels: Internal

#63 - Release Fix

Pull Request - State: closed - Opened by maestroque 6 months ago - 2 comments
Labels: Minormod-breaking

#62 - Refactoring for numpy >2.0 support

Issue - State: open - Opened by maestroque 6 months ago
Labels: Bug

#61 - Fix readthedocs config

Pull Request - State: closed - Opened by me-pic 6 months ago - 1 comment
Labels: released, Internal, Documentation

#60 - Readthedocs failed build

Issue - State: closed - Opened by me-pic 6 months ago
Labels: Documentation

#57 - Add pydra tasks, workflow and update CLI

Pull Request - State: open - Opened by maestroque 7 months ago - 25 comments
Labels: Testing, Minormod-breaking, Internal

#56 - Generate docs

Pull Request - State: closed - Opened by maestroque 7 months ago - 1 comment
Labels: Documentation

#55 - Increase unit test coverage for metrics calculation

Issue - State: open - Opened by maestroque 8 months ago
Labels: Testing

#54 - Integrate physutils - Physio object usage

Pull Request - State: closed - Opened by maestroque 8 months ago - 21 comments
Labels: Testing, Minormod-breaking

#53 - [WIP] Integrate Loguru

Pull Request - State: closed - Opened by maestroque 9 months ago - 1 comment

#52 - Add auto-author and auto-label to github workflow

Pull Request - State: closed - Opened by RayStick 10 months ago - 7 comments
Labels: Internal

#51 - Implement auto-author-assign and auto-label workflows

Issue - State: closed - Opened by RayStick 10 months ago
Labels: Internal

#50 - Fix matplotlib typo in requirement.txt

Pull Request - State: closed - Opened by erwinschrodinger1 11 months ago - 1 comment
Labels: released, Internal

#49 - Typo: requirements.txt

Issue - State: closed - Opened by erwinschrodinger1 11 months ago
Labels: Bug

#48 - Implement Loguru for better logging

Issue - State: open - Opened by smoia over 1 year ago - 1 comment
Labels: Good first issue, Enhancement

#47 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago
Labels: Testing, Internal

#46 - Update configuration

Pull Request - State: closed - Opened by smoia over 1 year ago
Labels: Internal, Hacktoberfest

#45 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#44 - Fix naming of metrics, clarify PULSE RATE vs HEART RATE

Pull Request - State: closed - Opened by smoia over 1 year ago
Labels: Minormod, Minormod-breaking

#43 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago
Labels: Internal

#42 - Revamping of the library (better title after OHBM)

Pull Request - State: closed - Opened by smoia almost 2 years ago
Labels: Refactoring, Minormod-breaking

#41 - Test in `metrics.chest_belt` fails, possibly due to deprecation

Issue - State: open - Opened by smoia about 2 years ago - 1 comment
Labels: Bug

#40 - Add citation to Birn et al. 2008 for RVT

Issue - State: open - Opened by smoia about 2 years ago

#39 - Update CircleCI configuration, add pre-commit

Pull Request - State: closed - Opened by kristinazvolanek about 2 years ago - 1 comment

#38 - fix mirrorpad buffer when too long

Pull Request - State: open - Opened by TomasLenc about 3 years ago

#37 - Add tests for utils

Pull Request - State: closed - Opened by TomasLenc about 3 years ago
Labels: Testing

#36 - Fix lag application for negative lags

Pull Request - State: open - Opened by tsalo over 3 years ago - 4 comments

#35 - Support negative lags in RV calculation

Issue - State: open - Opened by tsalo over 3 years ago - 1 comment
Labels: Good first issue, Enhancement

#34 - Update phys2denoise contributors and contributions

Issue - State: open - Opened by smoia almost 4 years ago
Labels: Community

#33 - Fix window calculation in env

Issue - State: closed - Opened by rzlim08 almost 4 years ago - 2 comments

#32 - Add smoke tests for metrics and fix miscellaneous bugs

Pull Request - State: closed - Opened by tsalo almost 4 years ago
Labels: Testing, BugFIX

#31 - Check metric citations

Issue - State: open - Opened by smoia almost 4 years ago - 1 comment
Labels: Enhancement

#30 - Add visualisation of regressors

Issue - State: open - Opened by smoia almost 4 years ago
Labels: Enhancement

#29 - Allow YAML-based config file with input arguments from/for workflow

Issue - State: open - Opened by tsalo almost 4 years ago
Labels: Enhancement

#28 - Add BIDS support to the main workflow

Issue - State: open - Opened by tsalo almost 4 years ago
Labels: Enhancement

#27 - Add general, report, and reference loggers

Issue - State: open - Opened by tsalo almost 4 years ago
Labels: Enhancement, Documentation

#26 - phys2denoise noncompetitive code sprint

Issue - State: closed - Opened by smoia almost 4 years ago
Labels: Community

#25 - OHBM 2021 abstract submission

Issue - State: closed - Opened by smoia about 4 years ago - 3 comments
Labels: Outreach, Community, Discussion

#24 - Add CPM (Kassinopoulos & Mitsis 2020)

Pull Request - State: open - Opened by tsalo about 4 years ago - 2 comments
Labels: Minormod

#23 - Requested metric: cardiac pulsatility model

Issue - State: open - Opened by tsalo about 4 years ago
Labels: Enhancement

#22 - Add Hilbert RVT (Harrison et al. 2020)

Pull Request - State: open - Opened by tsalo about 4 years ago
Labels: Minormod

#21 - Add RVT algorithm (Birn et al. 2006)

Pull Request - State: closed - Opened by rzlim08 about 4 years ago - 9 comments
Labels: Minormod

#20 - Update PR template to match `phys2bids`

Pull Request - State: closed - Opened by smoia over 4 years ago
Labels: Internal

#19 - Add initial set of metrics

Pull Request - State: closed - Opened by tsalo over 4 years ago - 1 comment
Labels: released, Minormod-breaking, Enhancement

#18 - Script metric call in workflow

Issue - State: closed - Opened by smoia over 4 years ago - 5 comments
Labels: Urgent, Discussion

#17 - Add main workflow of phys2denoise

Pull Request - State: closed - Opened by smoia over 4 years ago - 7 comments
Labels: released, Minormod-breaking

#16 - Remove Travis config file

Pull Request - State: closed - Opened by eurunuela over 4 years ago - 1 comment
Labels: Duplicate

#15 - Travis config file in repo

Issue - State: closed - Opened by eurunuela over 4 years ago
Labels: Internal

#14 - Add Parser

Pull Request - State: closed - Opened by ineschh over 4 years ago - 2 comments

#13 - phys2denoise 1.0

Issue - State: open - Opened by smoia over 4 years ago - 5 comments
Labels: Discussion

#12 - Add initial infrastructure

Pull Request - State: closed - Opened by smoia over 4 years ago - 16 comments
Labels: Internal

#11 - Logo for phys2denoise

Issue - State: open - Opened by smoia over 4 years ago - 2 comments
Labels: Outreach, Community

#10 - Improved RVT calculation with Hilbert transform

Issue - State: open - Opened by tsalo over 4 years ago - 3 comments
Labels: Enhancement

#9 - Scan-specific physiological response function estimation

Issue - State: open - Opened by tsalo over 4 years ago
Labels: Enhancement

#8 - Design strategy

Issue - State: open - Opened by tsalo over 4 years ago
Labels: Discussion

#7 - Add RETROICOR algorithm (Glover et al. 2000)

Pull Request - State: closed - Opened by CesarCaballeroGaudes over 4 years ago - 1 comment
Labels: Minormod

#6 - Inspiration from NeuroKit?

Issue - State: open - Opened by jdkent over 4 years ago - 4 comments
Labels: Discussion

#5 - Build citable report as part of main workflow

Issue - State: open - Opened by tsalo over 4 years ago
Labels: Enhancement

#4 - [ENH] Start drafting structure

Pull Request - State: closed - Opened by tsalo almost 5 years ago - 1 comment

#3 - Requested metric: respiratory pattern variability

Issue - State: closed - Opened by tsalo almost 5 years ago - 1 comment
Labels: Enhancement

#2 - Requested metric: respiratory variance

Issue - State: closed - Opened by tsalo almost 5 years ago - 1 comment
Labels: Enhancement

#1 - Requested metric: respiratory-volume-per-time

Issue - State: closed - Opened by tsalo almost 5 years ago - 7 comments
Labels: Enhancement

GitHub / physiopy/phys2denoise issues and pull requests