Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / phyloref/phyx.js issues and pull requests

#144 - Add links to our npmjs URL

Pull Request - State: closed - Opened by gaurav 3 months ago - 1 comment

#143 - Replaced dwc:basisOfRecord to basisOfRecord

Pull Request - State: open - Opened by gaurav 4 months ago

#142 - Release phyx.js v1.2.0

Pull Request - State: open - Opened by gaurav 4 months ago

#141 - Improve tests for normalization

Issue - State: open - Opened by gaurav 4 months ago

#140 - Add tests for normalizing Phyx files and phylogenies

Issue - State: open - Opened by gaurav 5 months ago

#139 - Upgrade NPM packages.

Pull Request - State: closed - Opened by gaurav 7 months ago

#138 - Add the ability to normalize wrapped objects

Pull Request - State: closed - Opened by gaurav 9 months ago - 1 comment

#137 - Release v1.1.1

Pull Request - State: closed - Opened by gaurav about 1 year ago

#136 - Updated Node.js versions tested to v18 and v20

Pull Request - State: closed - Opened by gaurav about 1 year ago

#135 - Remove status tracking code from PhylorefWrapper

Issue - State: open - Opened by gaurav over 1 year ago

#133 - Guarded accessing phyloref.internalSpecifiers/externalSpecifiers

Pull Request - State: closed - Opened by gaurav over 1 year ago

#132 - Add support for per-phyloreference contributors

Issue - State: open - Opened by gaurav over 1 year ago

#131 - Release v1.1.0

Pull Request - State: closed - Opened by gaurav over 1 year ago

#130 - Upgraded packages with `npm upgrade`

Pull Request - State: closed - Opened by gaurav over 1 year ago

#129 - Add curator notes to phylorefs and phylogenies

Pull Request - State: closed - Opened by gaurav over 1 year ago

#128 - Add citation and CITATION.CFF file for phyx.js

Pull Request - State: closed - Opened by gaurav over 1 year ago

#127 - Upgrade newick-js to v1.2.1

Pull Request - State: closed - Opened by gaurav over 1 year ago

#126 - Add citation

Issue - State: closed - Opened by hlapp over 1 year ago

#125 - Add curator information

Pull Request - State: closed - Opened by gaurav over 1 year ago - 2 comments

#124 - Upgraded packages with `npm upgrade`

Pull Request - State: closed - Opened by gaurav over 1 year ago

#123 - Bump json5 from 1.0.1 to 1.0.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#122 - Add a curator notes field for the phylogeny

Issue - State: closed - Opened by gaurav almost 2 years ago - 1 comment

#121 - Add support for per-phylogeny nomenclatural code

Issue - State: open - Opened by gaurav almost 2 years ago

#120 - Bump qs from 6.5.2 to 6.5.3

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#119 - Add fields for storing curator information

Issue - State: closed - Opened by gaurav almost 2 years ago - 4 comments

#118 - Bump moment from 2.29.1 to 2.29.4

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#117 - Bump moment from 2.29.1 to 2.29.2

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#115 - Bump follow-redirects from 1.14.4 to 1.14.8

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#114 - Added a test for toRDF() without a baseIRI

Pull Request - State: open - Opened by gaurav over 2 years ago

#112 - Release v1.0.1

Pull Request - State: closed - Opened by gaurav almost 3 years ago

#111 - Changes link to tutorials to directory

Pull Request - State: closed - Opened by hlapp about 3 years ago

#110 - Added note that Binder cannot be used

Pull Request - State: closed - Opened by gaurav about 3 years ago

#109 - Add resolve.js instructions to Introduction tutorial

Pull Request - State: closed - Opened by gaurav about 3 years ago

#108 - Added links to published JSON-LD contexts and JSON schemas.

Pull Request - State: closed - Opened by gaurav about 3 years ago - 1 comment

#106 - Fixed typo in resolve.js

Pull Request - State: closed - Opened by gaurav about 3 years ago - 1 comment

#105 - Add support for running tutorial notebooks in MyBinder

Issue - State: open - Opened by gaurav about 3 years ago

#104 - Fix typo in resolve.js: `internal` -> `external`

Issue - State: closed - Opened by gaurav about 3 years ago

#103 - Improve integration of the tutorial

Pull Request - State: closed - Opened by gaurav about 3 years ago - 1 comment

#102 - Put tutorial in a place where it has a stable link to a HTML rendering

Issue - State: closed - Opened by hlapp about 3 years ago - 5 comments

#100 - The README.md file in the context/ directory should include a link to the current JSON-LD context file

Issue - State: closed - Opened by hlapp about 3 years ago
Labels: Phyx context issues

#99 - Add tutorial

Pull Request - State: closed - Opened by gaurav over 3 years ago - 5 comments

#98 - Write a tutorial for Phyx.js

Issue - State: closed - Opened by gaurav over 3 years ago

#97 - Use `phyloref:matches_TU` to indicate relationships between TUs

Issue - State: closed - Opened by gaurav over 3 years ago - 1 comment

#95 - Replace obo:CDAO_0000198 with the more accurate obo:CDAO_0000200

Pull Request - State: closed - Opened by gaurav over 3 years ago

#94 - Support top-level `source` and add some RDF properties

Pull Request - State: closed - Opened by gaurav over 3 years ago - 1 comment

#92 - Add N-Quads output to phyx.js

Pull Request - State: closed - Opened by gaurav over 3 years ago - 1 comment

#91 - Phyx v1.0.0

Pull Request - State: closed - Opened by gaurav over 3 years ago

#90 - Identify and remove redundant component class generation

Issue - State: open - Opened by gaurav over 3 years ago - 1 comment

#89 - Add linting for JSON files in the repository

Pull Request - State: closed - Opened by gaurav over 3 years ago

#88 - Added scientificNameAuthorship examples

Pull Request - State: closed - Opened by gaurav over 3 years ago

#87 - Removed some unnecessary RDF properties

Pull Request - State: closed - Opened by gaurav over 3 years ago - 4 comments

#85 - Generate documentation in `docs/` using ESDocs

Pull Request - State: closed - Opened by gaurav over 3 years ago

#83 - Replace CDAO:has_Ancestor expression with phyloref:has_outside_TU

Issue - State: open - Opened by gaurav over 3 years ago - 1 comment

#82 - Centralize setup/teardown code in the test suite

Issue - State: open - Opened by gaurav over 3 years ago

#81 - Remove Testcase ontology

Pull Request - State: closed - Opened by gaurav over 3 years ago - 1 comment

#79 - Test nomenclatural code fallbacks

Pull Request - State: closed - Opened by gaurav over 3 years ago

#78 - Figure out what to do about the top-level object in a Phyx file

Issue - State: closed - Opened by gaurav over 3 years ago - 7 comments

#77 - Remove `@id` for base IRI in generated JSON-LD

Pull Request - State: closed - Opened by gaurav over 3 years ago

#76 - Rename URI to IRI

Pull Request - State: closed - Opened by gaurav over 3 years ago

#75 - Add specimen and taxon circumscription

Pull Request - State: closed - Opened by gaurav over 3 years ago - 5 comments

#73 - Add support for using phylorefs as specifiers

Pull Request - State: open - Opened by gaurav over 3 years ago

#72 - Add apomorphy-based phyloref

Pull Request - State: closed - Opened by gaurav over 3 years ago - 13 comments

#71 - Replace `cladeDefinition` to `definition`

Pull Request - State: closed - Opened by gaurav over 3 years ago - 1 comment

#70 - Include nomenclatural codes

Pull Request - State: closed - Opened by gaurav over 3 years ago - 2 comments

#69 - Added JSON Schema testing for files that should fail validation

Pull Request - State: closed - Opened by gaurav over 3 years ago

#68 - Improve logical expression generation

Pull Request - State: closed - Opened by gaurav over 3 years ago

#67 - Rearrange example files into `correct` and `incorrect` directories

Pull Request - State: closed - Opened by gaurav over 3 years ago

#66 - Added basic CitationWrapper to implement bibliographicCitation

Pull Request - State: closed - Opened by gaurav over 3 years ago

#65 - Switch to GitHub actions

Pull Request - State: closed - Opened by gaurav over 3 years ago - 1 comment

#64 - Add RDF properties for bibliography to JSON context

Issue - State: closed - Opened by gaurav over 3 years ago - 2 comments

#63 - Fix issue 57 (single phyloref resolving to multiple nodes)

Pull Request - State: closed - Opened by gaurav over 3 years ago - 1 comment

#62 - Test with JPhyloRef

Pull Request - State: closed - Opened by gaurav over 3 years ago

#61 - Add phyloref type to phyloreferences

Pull Request - State: closed - Opened by gaurav over 3 years ago - 1 comment

#60 - Add tests for 'representsTaxonomicUnits'

Pull Request - State: closed - Opened by gaurav over 3 years ago - 1 comment

#59 - Fix definition source

Pull Request - State: closed - Opened by gaurav over 3 years ago

#58 - Attempted to replace external specifier algo with a simpler one

Pull Request - State: closed - Opened by gaurav over 3 years ago - 1 comment

#57 - Investigate example of a phyloref that resolves to two nodes

Issue - State: closed - Opened by gaurav almost 4 years ago - 4 comments

#56 - Bump lodash from 4.17.15 to 4.17.19

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 1 comment
Labels: dependencies

#55 - Standardize style for JSON files

Issue - State: closed - Opened by gaurav about 4 years ago
Labels: enhancement

#54 - Add scientificNameAuthorship to example files

Issue - State: closed - Opened by gaurav over 4 years ago

#53 - What metadata is useful at the Phyx file level?

Issue - State: closed - Opened by gaurav over 4 years ago - 1 comment

#52 - Test all combinations

Pull Request - State: closed - Opened by gaurav over 4 years ago - 3 comments

#51 - Created script to resolve phylorefs using the Open Tree of Life APIs

Pull Request - State: closed - Opened by gaurav over 4 years ago - 4 comments

#50 - Added phyx2owl script for converting Phyx files to OWL

Pull Request - State: closed - Opened by gaurav over 4 years ago

#49 - Make baseURI editable in PhyxWrapper

Pull Request - State: closed - Opened by gaurav over 4 years ago

#48 - Clean up context and create JSON schema for Phyx

Pull Request - State: closed - Opened by gaurav over 4 years ago

#47 - Improve ESDocs output

Pull Request - State: closed - Opened by gaurav over 4 years ago - 1 comment

#46 - Add Github Action for generating documentation

Pull Request - State: closed - Opened by gaurav over 4 years ago - 1 comment

#45 - Add support for Open Tree of Life MRCA call

Issue - State: open - Opened by gaurav over 4 years ago - 1 comment