Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / phyloref/phyx.js issues and pull requests
#144 - Add links to our npmjs URL
Pull Request -
State: closed - Opened by gaurav 3 months ago
- 1 comment
#143 - Replaced dwc:basisOfRecord to basisOfRecord
Pull Request -
State: open - Opened by gaurav 4 months ago
#142 - Release phyx.js v1.2.0
Pull Request -
State: open - Opened by gaurav 4 months ago
#141 - Improve tests for normalization
Issue -
State: open - Opened by gaurav 4 months ago
#140 - Add tests for normalizing Phyx files and phylogenies
Issue -
State: open - Opened by gaurav 5 months ago
#139 - Upgrade NPM packages.
Pull Request -
State: closed - Opened by gaurav 7 months ago
#138 - Add the ability to normalize wrapped objects
Pull Request -
State: closed - Opened by gaurav 9 months ago
- 1 comment
#137 - Release v1.1.1
Pull Request -
State: closed - Opened by gaurav about 1 year ago
#136 - Updated Node.js versions tested to v18 and v20
Pull Request -
State: closed - Opened by gaurav about 1 year ago
#135 - Remove status tracking code from PhylorefWrapper
Issue -
State: open - Opened by gaurav over 1 year ago
#134 - Add methods to return a normalized representation of wrappers
Issue -
State: open - Opened by gaurav over 1 year ago
#133 - Guarded accessing phyloref.internalSpecifiers/externalSpecifiers
Pull Request -
State: closed - Opened by gaurav over 1 year ago
#132 - Add support for per-phyloreference contributors
Issue -
State: open - Opened by gaurav over 1 year ago
#131 - Release v1.1.0
Pull Request -
State: closed - Opened by gaurav over 1 year ago
#130 - Upgraded packages with `npm upgrade`
Pull Request -
State: closed - Opened by gaurav over 1 year ago
#129 - Add curator notes to phylorefs and phylogenies
Pull Request -
State: closed - Opened by gaurav over 1 year ago
#128 - Add citation and CITATION.CFF file for phyx.js
Pull Request -
State: closed - Opened by gaurav over 1 year ago
#127 - Upgrade newick-js to v1.2.1
Pull Request -
State: closed - Opened by gaurav over 1 year ago
#126 - Add citation
Issue -
State: closed - Opened by hlapp over 1 year ago
#125 - Add curator information
Pull Request -
State: closed - Opened by gaurav over 1 year ago
- 2 comments
#124 - Upgraded packages with `npm upgrade`
Pull Request -
State: closed - Opened by gaurav over 1 year ago
#123 - Bump json5 from 1.0.1 to 1.0.2
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 1 comment
Labels: dependencies
#122 - Add a curator notes field for the phylogeny
Issue -
State: closed - Opened by gaurav almost 2 years ago
- 1 comment
#121 - Add support for per-phylogeny nomenclatural code
Issue -
State: open - Opened by gaurav almost 2 years ago
#120 - Bump qs from 6.5.2 to 6.5.3
Pull Request -
State: closed - Opened by dependabot[bot] almost 2 years ago
- 1 comment
Labels: dependencies
#119 - Add fields for storing curator information
Issue -
State: closed - Opened by gaurav almost 2 years ago
- 4 comments
#118 - Bump moment from 2.29.1 to 2.29.4
Pull Request -
State: closed - Opened by dependabot[bot] about 2 years ago
- 1 comment
Labels: dependencies
#117 - Bump moment from 2.29.1 to 2.29.2
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies
#116 - Document that PhylogenyWrapper.getNodeLabels() and .getParsedNewick() may throw an Error
Issue -
State: open - Opened by gaurav over 2 years ago
- 3 comments
#115 - Bump follow-redirects from 1.14.4 to 1.14.8
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies
#114 - Added a test for toRDF() without a baseIRI
Pull Request -
State: open - Opened by gaurav over 2 years ago
#113 - `toRDF()` without providing a base IRI doesn't produce phylorefs and phylogenies
Issue -
State: open - Opened by gaurav over 2 years ago
#112 - Release v1.0.1
Pull Request -
State: closed - Opened by gaurav almost 3 years ago
#111 - Changes link to tutorials to directory
Pull Request -
State: closed - Opened by hlapp about 3 years ago
#110 - Added note that Binder cannot be used
Pull Request -
State: closed - Opened by gaurav about 3 years ago
#109 - Add resolve.js instructions to Introduction tutorial
Pull Request -
State: closed - Opened by gaurav about 3 years ago
#108 - Added links to published JSON-LD contexts and JSON schemas.
Pull Request -
State: closed - Opened by gaurav about 3 years ago
- 1 comment
#107 - Add an example of using `resolve.js` to the `Introduction.ipynb` tutorial
Issue -
State: closed - Opened by gaurav about 3 years ago
#106 - Fixed typo in resolve.js
Pull Request -
State: closed - Opened by gaurav about 3 years ago
- 1 comment
#105 - Add support for running tutorial notebooks in MyBinder
Issue -
State: open - Opened by gaurav about 3 years ago
#104 - Fix typo in resolve.js: `internal` -> `external`
Issue -
State: closed - Opened by gaurav about 3 years ago
#103 - Improve integration of the tutorial
Pull Request -
State: closed - Opened by gaurav about 3 years ago
- 1 comment
#102 - Put tutorial in a place where it has a stable link to a HTML rendering
Issue -
State: closed - Opened by hlapp about 3 years ago
- 5 comments
#101 - Allow tests to continue working when the Open Tree synthetic tree version changes
Issue -
State: open - Opened by gaurav about 3 years ago
#100 - The README.md file in the context/ directory should include a link to the current JSON-LD context file
Issue -
State: closed - Opened by hlapp about 3 years ago
Labels: Phyx context issues
#99 - Add tutorial
Pull Request -
State: closed - Opened by gaurav over 3 years ago
- 5 comments
#98 - Write a tutorial for Phyx.js
Issue -
State: closed - Opened by gaurav over 3 years ago
#97 - Use `phyloref:matches_TU` to indicate relationships between TUs
Issue -
State: closed - Opened by gaurav over 3 years ago
- 1 comment
#96 - Copied JSON Schema and JSON context files to `v1.0.0/` directory for release
Pull Request -
State: closed - Opened by gaurav over 3 years ago
#95 - Replace obo:CDAO_0000198 with the more accurate obo:CDAO_0000200
Pull Request -
State: closed - Opened by gaurav over 3 years ago
#94 - Support top-level `source` and add some RDF properties
Pull Request -
State: closed - Opened by gaurav over 3 years ago
- 1 comment
#93 - Redundant obo:CDAO_0000200 ("belongs_to_Tree") connects every node to its phylogeny; should be removed
Issue -
State: closed - Opened by gaurav over 3 years ago
- 4 comments
#92 - Add N-Quads output to phyx.js
Pull Request -
State: closed - Opened by gaurav over 3 years ago
- 1 comment
#91 - Phyx v1.0.0
Pull Request -
State: closed - Opened by gaurav over 3 years ago
#90 - Identify and remove redundant component class generation
Issue -
State: open - Opened by gaurav over 3 years ago
- 1 comment
#89 - Add linting for JSON files in the repository
Pull Request -
State: closed - Opened by gaurav over 3 years ago
#88 - Added scientificNameAuthorship examples
Pull Request -
State: closed - Opened by gaurav over 3 years ago
#87 - Removed some unnecessary RDF properties
Pull Request -
State: closed - Opened by gaurav over 3 years ago
- 4 comments
#86 - Use `rdfs:isDefinedBy` to link phyloreferences and phylogenies to the ontology
Pull Request -
State: closed - Opened by gaurav over 3 years ago
#85 - Generate documentation in `docs/` using ESDocs
Pull Request -
State: closed - Opened by gaurav over 3 years ago
#84 - Add README files to describe example Phyx files and the context/JSON Schema directory
Pull Request -
State: closed - Opened by gaurav over 3 years ago
#83 - Replace CDAO:has_Ancestor expression with phyloref:has_outside_TU
Issue -
State: open - Opened by gaurav over 3 years ago
- 1 comment
#82 - Centralize setup/teardown code in the test suite
Issue -
State: open - Opened by gaurav over 3 years ago
#81 - Remove Testcase ontology
Pull Request -
State: closed - Opened by gaurav over 3 years ago
- 1 comment
#80 - Improve testing of phylorefs without expected resolution in the test suite
Pull Request -
State: open - Opened by gaurav over 3 years ago
#79 - Test nomenclatural code fallbacks
Pull Request -
State: closed - Opened by gaurav over 3 years ago
#78 - Figure out what to do about the top-level object in a Phyx file
Issue -
State: closed - Opened by gaurav over 3 years ago
- 7 comments
#77 - Remove `@id` for base IRI in generated JSON-LD
Pull Request -
State: closed - Opened by gaurav over 3 years ago
#76 - Rename URI to IRI
Pull Request -
State: closed - Opened by gaurav over 3 years ago
#75 - Add specimen and taxon circumscription
Pull Request -
State: closed - Opened by gaurav over 3 years ago
- 5 comments
#74 - JSON-LD files generated from Phyx files unnecessarily need to refer to `phyloref:Phyloreference`
Issue -
State: open - Opened by gaurav over 3 years ago
#73 - Add support for using phylorefs as specifiers
Pull Request -
State: open - Opened by gaurav over 3 years ago
#72 - Add apomorphy-based phyloref
Pull Request -
State: closed - Opened by gaurav over 3 years ago
- 13 comments
#71 - Replace `cladeDefinition` to `definition`
Pull Request -
State: closed - Opened by gaurav over 3 years ago
- 1 comment
#70 - Include nomenclatural codes
Pull Request -
State: closed - Opened by gaurav over 3 years ago
- 2 comments
#69 - Added JSON Schema testing for files that should fail validation
Pull Request -
State: closed - Opened by gaurav over 3 years ago
#68 - Improve logical expression generation
Pull Request -
State: closed - Opened by gaurav over 3 years ago
#67 - Rearrange example files into `correct` and `incorrect` directories
Pull Request -
State: closed - Opened by gaurav over 3 years ago
#66 - Added basic CitationWrapper to implement bibliographicCitation
Pull Request -
State: closed - Opened by gaurav over 3 years ago
#65 - Switch to GitHub actions
Pull Request -
State: closed - Opened by gaurav over 3 years ago
- 1 comment
#64 - Add RDF properties for bibliography to JSON context
Issue -
State: closed - Opened by gaurav over 3 years ago
- 2 comments
#63 - Fix issue 57 (single phyloref resolving to multiple nodes)
Pull Request -
State: closed - Opened by gaurav over 3 years ago
- 1 comment
#62 - Test with JPhyloRef
Pull Request -
State: closed - Opened by gaurav over 3 years ago
#61 - Add phyloref type to phyloreferences
Pull Request -
State: closed - Opened by gaurav over 3 years ago
- 1 comment
#60 - Add tests for 'representsTaxonomicUnits'
Pull Request -
State: closed - Opened by gaurav over 3 years ago
- 1 comment
#59 - Fix definition source
Pull Request -
State: closed - Opened by gaurav over 3 years ago
#58 - Attempted to replace external specifier algo with a simpler one
Pull Request -
State: closed - Opened by gaurav over 3 years ago
- 1 comment
#57 - Investigate example of a phyloref that resolves to two nodes
Issue -
State: closed - Opened by gaurav almost 4 years ago
- 4 comments
#56 - Bump lodash from 4.17.15 to 4.17.19
Pull Request -
State: closed - Opened by dependabot[bot] about 4 years ago
- 1 comment
Labels: dependencies
#55 - Standardize style for JSON files
Issue -
State: closed - Opened by gaurav about 4 years ago
Labels: enhancement
#54 - Add scientificNameAuthorship to example files
Issue -
State: closed - Opened by gaurav over 4 years ago
#53 - What metadata is useful at the Phyx file level?
Issue -
State: closed - Opened by gaurav over 4 years ago
- 1 comment
#52 - Test all combinations
Pull Request -
State: closed - Opened by gaurav over 4 years ago
- 3 comments
#51 - Created script to resolve phylorefs using the Open Tree of Life APIs
Pull Request -
State: closed - Opened by gaurav over 4 years ago
- 4 comments
#50 - Added phyx2owl script for converting Phyx files to OWL
Pull Request -
State: closed - Opened by gaurav over 4 years ago
#49 - Make baseURI editable in PhyxWrapper
Pull Request -
State: closed - Opened by gaurav over 4 years ago
#48 - Clean up context and create JSON schema for Phyx
Pull Request -
State: closed - Opened by gaurav over 4 years ago
#47 - Improve ESDocs output
Pull Request -
State: closed - Opened by gaurav over 4 years ago
- 1 comment
#46 - Add Github Action for generating documentation
Pull Request -
State: closed - Opened by gaurav over 4 years ago
- 1 comment
#45 - Add support for Open Tree of Life MRCA call
Issue -
State: open - Opened by gaurav over 4 years ago
- 1 comment