Ecosyste.ms: Issues

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GitHub / philipc/gkl-rs issues and pull requests

#16 - Increasing max alignment length

Issue - State: open - Opened by rhysnewell about 2 years ago - 4 comments

#15 - Discussion: Feasibility of developing a needleman-wunsch global aligner

Issue - State: closed - Opened by rhysnewell about 2 years ago - 4 comments

#14 - Release 0.1.1

Pull Request - State: closed - Opened by philipc almost 3 years ago

#13 - smithwaterman: avoid global variable

Pull Request - State: closed - Opened by philipc almost 3 years ago

#12 - Smith-waterman aligner bug

Issue - State: closed - Opened by rhysnewell almost 3 years ago - 6 comments

#11 - smithwaterman: cleanups and comments

Pull Request - State: closed - Opened by philipc almost 3 years ago

#10 - smithwaterman: fixes for rust implementation

Pull Request - State: closed - Opened by philipc almost 3 years ago - 1 comment

#9 - smithwaterman: add Rust implementation

Pull Request - State: closed - Opened by philipc almost 3 years ago

#8 - pairhmm: simplify match to match probability

Pull Request - State: closed - Opened by philipc almost 3 years ago

#7 - pairhmm: fix initialisation of `m_t_1` at start of rows

Pull Request - State: closed - Opened by philipc almost 3 years ago

#6 - Fix `forward_f64x4` regression

Pull Request - State: closed - Opened by philipc almost 3 years ago

#5 - pairhmm: avoid `unsafe compute`

Pull Request - State: closed - Opened by philipc almost 3 years ago

#4 - pairhmm: small bitmask optimisation

Pull Request - State: closed - Opened by philipc almost 3 years ago

#3 - pairhmm: add rust implementations

Pull Request - State: closed - Opened by philipc almost 3 years ago - 1 comment

#2 - Add benchmarks

Pull Request - State: closed - Opened by philipc almost 3 years ago - 1 comment

#1 - Compiling with x86_64-unknown-linux-musl

Issue - State: closed - Opened by rhysnewell almost 3 years ago - 2 comments