phil-mansfield/shellfish issues and pull requests

#168 - Head

Pull Request - State: closed - Opened by phil-mansfield about 3 years ago

#167 - Problem with R200m unit

Issue - State: open - Opened by SuhoRyu about 3 years ago - 19 comments

#166 - Issue with running download.sh

Issue - State: open - Opened by SuhoRyu about 3 years ago - 4 comments

#165 - HDF5 particle snapshots

Issue - State: open - Opened by mcataneo over 4 years ago

#164 - Nil snap

Pull Request - State: closed - Opened by phil-mansfield about 7 years ago

#163 - Mass debug

Pull Request - State: closed - Opened by phil-mansfield about 7 years ago

#162 - Bolshoi reader

Pull Request - State: closed - Opened by phil-mansfield about 7 years ago

#161 - Gadget2 reader

Pull Request - State: closed - Opened by phil-mansfield about 7 years ago

#160 - Check mode

Pull Request - State: closed - Opened by phil-mansfield about 7 years ago

#159 - Configurable Gadget snapshot units

Issue - State: open - Opened by phil-mansfield about 7 years ago
Labels: enhancement, priority: low

#158 - ZOMG splashback masses are too high

Issue - State: open - Opened by phil-mansfield about 7 years ago - 2 comments
Labels: bug, priority: high

#157 - Generalize Gadget reader

Issue - State: open - Opened by phil-mansfield about 7 years ago - 3 comments
Labels: bug, priority: everything is on fire

#156 - Write sanity check mode

Issue - State: closed - Opened by phil-mansfield about 7 years ago - 3 comments
Labels: enhancement, priority: high

#155 - Optimized catalog.Parse() and added int output columns.

Pull Request - State: closed - Opened by phil-mansfield about 7 years ago

#154 - Fixed nil halo bug.

Pull Request - State: closed - Opened by phil-mansfield over 7 years ago

#153 - Wrong units for input halos when units not specified

Issue - State: closed - Opened by phil-mansfield over 7 years ago
Labels: bug, priority: medium

#152 - Issue 150

Pull Request - State: closed - Opened by phil-mansfield over 7 years ago

#151 - Issue 148

Pull Request - State: closed - Opened by phil-mansfield over 7 years ago

#150 - Segfaults in header reading code under certain setups

Issue - State: closed - Opened by phil-mansfield over 7 years ago
Labels: bug, priority: everything is on fire

#149 - Halo* variables still required even if HaloType=nil

Issue - State: closed - Opened by phil-mansfield over 7 years ago
Labels: bug, priority: high

#148 - Changes to gonum public API cause compiler errors

Issue - State: closed - Opened by phil-mansfield over 7 years ago
Labels: bug, priority: everything is on fire

#147 - Sometimes shellfish

Issue - State: closed - Opened by phil-mansfield almost 8 years ago
Labels: bug, priority: high

#146 - Non-parsing flag usage can result in a runtime panic.

Issue - State: open - Opened by phil-mansfield almost 8 years ago
Labels: bug, priority: high

#145 - shellfish coord consumes a very large amount of memory when run on O(10^7) halos

Issue - State: open - Opened by phil-mansfield almost 8 years ago
Labels: bug, priority: high

#144 - A more convenient way to pass large tables of IDs to shellfish id

Issue - State: open - Opened by phil-mansfield almost 8 years ago
Labels: enhancement, priority: medium

#143 - M200mMin and M200mMax not properly filtering masses in some cases

Issue - State: open - Opened by phil-mansfield almost 8 years ago
Labels: bug, priority: high

#142 - Confusing error messages if cached reference config file is not valid

Issue - State: open - Opened by phil-mansfield almost 8 years ago
Labels: bug, priority: medium

#141 - shell particle files not written in little endian order

Issue - State: open - Opened by phil-mansfield almost 8 years ago
Labels: bug, priority: low

#140 - Shell filter mode does not write particle file.

Issue - State: closed - Opened by phil-mansfield almost 8 years ago - 1 comment
Labels: bug, priority: high

#139 - Thread-parallelize bounding box finding

Issue - State: open - Opened by phil-mansfield almost 8 years ago
Labels: enhancement, priority: medium

#138 - Linear search used in id mode's findOverlapSubs

Issue - State: open - Opened by phil-mansfield almost 8 years ago
Labels: enhancement, priority: high

#137 - Non comoving units handled incorrectling in coord mode

Issue - State: closed - Opened by phil-mansfield almost 8 years ago - 1 comment
Labels: bug, priority: high

#136 - LGadget2 total number of particles

Issue - State: closed - Opened by manodeep almost 8 years ago - 7 comments
Labels: bug, priority: high

#135 - Consistent naming capitalization for config file variables.

Issue - State: open - Opened by phil-mansfield almost 8 years ago
Labels: enhancement, priority: medium

#134 - Logging mode cannot be set from config file

Issue - State: closed - Opened by phil-mansfield almost 8 years ago
Labels: bug, priority: high

#133 - Identify subhalos that fall within splashback shell

Issue - State: open - Opened by phil-mansfield almost 8 years ago - 1 comment
Labels: enhancement, priority: high

#132 - Fix config files

Pull Request - State: closed - Opened by phil-mansfield almost 8 years ago

#131 - Command line parsing needs to respect negative ints.

Issue - State: closed - Opened by phil-mansfield almost 8 years ago
Labels: bug, priority: everything is on fire

#130 - Force SHELLFISH_GLOBAL_CONFIG to be set

Issue - State: closed - Opened by phil-mansfield almost 8 years ago
Labels: enhancement, priority: high

#129 - Double check symlink example code for correctness

Issue - State: closed - Opened by phil-mansfield almost 8 years ago - 1 comment
Labels: bug, priority: low

#128 - Add MPI support

Issue - State: open - Opened by phil-mansfield almost 8 years ago
Labels: enhancement, priority: medium

#127 - Allow Shellfish to work on arbitrarily high halo counts

Issue - State: open - Opened by phil-mansfield almost 8 years ago
Labels: enhancement, priority: high

#126 - Finish project outline section of the contribution section in the introduction

Issue - State: open - Opened by phil-mansfield almost 8 years ago
Labels: enhancement, priority: low

#125 - Make sure "nil" flags actually remove all errors due to underspecified related fields

Issue - State: closed - Opened by phil-mansfield almost 8 years ago
Labels: bug, priority: high

#124 - Add shellfish hello mode

Issue - State: closed - Opened by phil-mansfield almost 8 years ago
Labels: enhancement, priority: low

#123 - Add a pretty picture to the readme

Issue - State: closed - Opened by phil-mansfield almost 8 years ago
Labels: enhancement, priority: low

#122 - Allow for a command line flag to force-overwrite config files

Issue - State: closed - Opened by phil-mansfield almost 8 years ago - 1 comment
Labels: enhancement, priority: medium

#121 - Check that all documentation is consistent with Shellfish's current API

Issue - State: closed - Opened by phil-mansfield almost 8 years ago - 8 comments
Labels: bug, priority: everything is on fire

#120 - EOF errors on reading of config files

Issue - State: open - Opened by phil-mansfield almost 8 years ago - 1 comment
Labels: bug, priority: low

#119 - Fix the way that halo radii are handled.

Issue - State: closed - Opened by phil-mansfield almost 8 years ago - 2 comments
Labels: bug, priority: everything is on fire

#118 - shellfish coord mode issuing EOF errors on some particle IDs

Issue - State: closed - Opened by phil-mansfield almost 8 years ago
Labels: bug

#117 - Generalized halo reading

Pull Request - State: closed - Opened by phil-mansfield almost 8 years ago
Labels: enhancement

#116 - Create memo dir if it does not currently exist.

Issue - State: closed - Opened by phil-mansfield almost 8 years ago - 1 comment
Labels: enhancement, priority: medium

#115 - Bug in math/sort/Percentile()

Issue - State: closed - Opened by phil-mansfield almost 8 years ago
Labels: bug

#114 - Binning median

Pull Request - State: closed - Opened by phil-mansfield about 8 years ago

#113 - Use uniform-area pixels to determine ring spacing

Issue - State: open - Opened by phil-mansfield about 8 years ago - 1 comment
Labels: enhancement, priority: low

#112 - Median profile

Pull Request - State: closed - Opened by phil-mansfield about 8 years ago

#111 - Minor changes before merge.

Pull Request - State: closed - Opened by phil-mansfield about 8 years ago

#110 - Shell profiles

Pull Request - State: closed - Opened by phil-mansfield about 8 years ago

#109 - los/analyze/getSmoothingWindow() is not thread safe

Issue - State: open - Opened by phil-mansfield about 8 years ago - 1 comment
Labels: bug, priority: low

#108 - shell and stats modes are quadratic in low-cost operations

Issue - State: closed - Opened by phil-mansfield about 8 years ago - 3 comments
Labels: bug, priority: high

#107 - Add warning to documentation warning about memory consumption of shellfish tree

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 1 comment
Labels: bug, priority: high

#106 - Fixed handling of units in artio reader.

Pull Request - State: closed - Opened by phil-mansfield over 8 years ago
Labels: bug

#105 - go-artio crashes on empty buffer reads in GetPositionsAt()

Issue - State: closed - Opened by phil-mansfield over 8 years ago
Labels: bug

#104 - ARTIO routines assume that box_size uses CMS units

Issue - State: closed - Opened by phil-mansfield over 8 years ago
Labels: bug

#103 - shellfish tree seg faults

Issue - State: closed - Opened by phil-mansfield over 8 years ago
Labels: bug

#102 - gotetra particle IDs are an abomination

Issue - State: open - Opened by phil-mansfield over 8 years ago - 1 comment
Labels: bug, priority: low

#101 - Particle filter

Pull Request - State: closed - Opened by phil-mansfield over 8 years ago
Labels: enhancement

#100 - ShellFilter mode does not work with ARTIO files

Issue - State: open - Opened by phil-mansfield over 8 years ago - 3 comments
Labels: bug, priority: low

#99 - ShellFilter mode does not work with gotetra files.

Issue - State: open - Opened by phil-mansfield over 8 years ago
Labels: bug, priority: low

#98 - ShellParticleFile variable should allow more flexibility in output file names

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 1 comment
Labels: enhancement

#96 - Add mass ratio calculator to shellfish stats

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 1 comment
Labels: enhancement

#92 - A seed should be printed to stdout on failure.

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 3 comments
Labels: enhancement, priority: medium

#88 - Add multiple logging modes

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 2 comments
Labels: enhancement

#84 - stats mode not properly using multiple cores

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 1 comment
Labels: bug

#83 - Remove histogram calculations

Issue - State: closed - Opened by phil-mansfield over 8 years ago
Labels: bug

#81 - Create a setup file that downloads and installs everything.

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 2 comments
Labels: enhancement, priority: medium

#76 - Add a "nuclear option" for filename specification

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 2 comments
Labels: enhancement, priority: low

#73 - Complete writeup on Penna coefficients in the doc/ folder.

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 1 comment
Labels: enhancement, priority: medium

#72 - Perform rigorous benchmarking and memory consumption analysis

Issue - State: open - Opened by phil-mansfield over 8 years ago - 2 comments
Labels: enhancement, priority: medium

#71 - Add example MPI Python script

Issue - State: open - Opened by phil-mansfield over 8 years ago - 2 comments
Labels: enhancement, priority: medium

#66 - Refactor the VectorBuffer implementations to inherit from some baseVectorBuffer struct.

Issue - State: open - Opened by phil-mansfield over 8 years ago - 1 comment
Labels: enhancement, priority: low

#63 - Add additional units as valid for HaloRadiusUnits and HaloPositionUnits

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 1 comment
Labels: enhancement, priority: high

#62 - Correct for differences between width of Go int's and C int's in phil-mansfield/go-artio

Issue - State: open - Opened by phil-mansfield over 8 years ago - 2 comments
Labels: bug, priority: low

#58 - Fix method for detecting whether or not IDs are in `%s_short.dat` memo files

Issue - State: open - Opened by phil-mansfield over 8 years ago - 1 comment
Labels: bug, priority: low

#57 - Write a simplified execution script, (simple_shellfish.go)

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 2 comments
Labels: enhancement, invalid, priority: medium

#55 - Add smart validation of `Halo%sColumn[s]` variables

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 1 comment
Labels: enhancement

#51 - Better error handling when GLOBAL_SHELLFISH_CONFIG is set

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 2 comments
Labels: bug, priority: medium

#49 - Optimize ParseCols using the table/'s optimization tricks.

Issue - State: open - Opened by phil-mansfield over 8 years ago - 3 comments
Labels: enhancement, priority: medium

#45 - ID config files should allow for mass ranges to be specified.

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 3 comments
Labels: enhancement, priority: medium

#44 - Adopt consistent tone across all error messages

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 1 comment
Labels: enhancement

#43 - Correctly implement versioning

Issue - State: open - Opened by phil-mansfield over 8 years ago - 1 comment
Labels: bug, priority: low

#40 - Change the stats mode so that it take user-configurable output columns.

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 1 comment
Labels: enhancement

#24 - Allow individual fields of config files to be set by command line flags

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 3 comments
Labels: enhancement, priority: high

#23 - Incorporate bad shell finding directly into the stats mode

Issue - State: closed - Opened by phil-mansfield over 8 years ago
Labels: enhancement

#19 - Correct intersection checking

Issue - State: open - Opened by phil-mansfield over 8 years ago - 1 comment
Labels: bug, priority: medium

#17 - Add verbose execution mode

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 1 comment
Labels: enhancement

#13 - GlobalConfig does not properly validate format strings

Issue - State: closed - Opened by phil-mansfield over 8 years ago
Labels: bug

#12 - Improve config file error messages

Issue - State: closed - Opened by phil-mansfield over 8 years ago - 1 comment
Labels: enhancement, priority: medium

#1 - Add documentation to all functions

Issue - State: open - Opened by phil-mansfield over 8 years ago - 1 comment
Labels: enhancement, priority: low

GitHub / phil-mansfield/shellfish issues and pull requests