Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / phenomecentre/nPYc-Toolbox issues and pull requests

#112 - ImportError: cannot import name 'interp' from 'scipy'

Issue - State: open - Opened by kopeckylukas 9 months ago - 2 comments

#111 - Merge pull request #110 from phenomecentre/master

Pull Request - State: closed - Opened by carolinesands about 1 year ago - 1 comment

#110 - Updating develop to match master

Pull Request - State: closed - Opened by carolinesands about 1 year ago - 1 comment

#109 - Develop

Pull Request - State: closed - Opened by carolinesands over 1 year ago - 1 comment

#108 - Feature/caroline

Pull Request - State: closed - Opened by carolinesands over 1 year ago - 1 comment

#107 - Feature/bruker biquant

Pull Request - State: closed - Opened by duibuqi over 1 year ago - 1 comment

#106 - Feature/fix setup.py

Pull Request - State: closed - Opened by gordondavies over 1 year ago

#105 - Merge from master to feature branch

Pull Request - State: closed - Opened by gordondavies over 1 year ago

#104 - Remove isatools and release

Pull Request - State: closed - Opened by gordondavies over 1 year ago - 1 comment

#103 - removed isatools code, functionality, and dependency

Pull Request - State: closed - Opened by gordondavies over 1 year ago - 2 comments

#102 - Create new branch for tasks

Issue - State: open - Opened by gordondavies almost 2 years ago

#101 - Create new MSTargetedDataset

Issue - State: open - Opened by gordondavies almost 2 years ago

#99 - Create new NMRTargetedDataset

Issue - State: open - Opened by gordondavies almost 2 years ago

#98 - Add sMolESY-profile importer to NMRDataset

Issue - State: open - Opened by gordondavies almost 2 years ago

#97 - Add new Proteomics Dataset object which extends MSDataset.

Issue - State: open - Opened by gordondavies almost 2 years ago

#96 - Feature/fix unit tests

Pull Request - State: closed - Opened by gordondavies almost 2 years ago - 2 comments

#95 - Test PR - only a single empty line has changed from develop

Pull Request - State: closed - Opened by gordondavies almost 2 years ago - 1 comment

#94 - Fixing the failing unit tests in develop

Pull Request - State: closed - Opened by gordondavies almost 2 years ago

#93 - Develop

Pull Request - State: closed - Opened by Gscorreia89 over 2 years ago - 1 comment

#92 - Develop

Pull Request - State: closed - Opened by Gscorreia89 over 2 years ago

#91 - Feature/batch correction updates

Pull Request - State: closed - Opened by Gscorreia89 over 2 years ago - 1 comment

#90 - Feature/ms import updates

Pull Request - State: closed - Opened by Gscorreia89 over 2 years ago - 1 comment

#89 - Feature/batch correction updates

Pull Request - State: closed - Opened by Gscorreia89 over 2 years ago - 1 comment

#88 - Batch Correction changes all values to 0

Issue - State: open - Opened by misch91 over 2 years ago - 4 comments

#86 - added import for XCMSonline, MZmine, MS-DIAL and nPYc exported data

Pull Request - State: closed - Opened by misch91 over 2 years ago

#85 - Import CSV, MS-DIAL, MZmine

Issue - State: open - Opened by misch91 almost 3 years ago - 7 comments
Labels: enhancement, documentation

#84 - master updates nov 2021

Pull Request - State: closed - Opened by Gscorreia89 about 3 years ago - 1 comment

#83 - Reports tailored for studies with replicate injections of samples

Issue - State: open - Opened by Gscorreia89 about 3 years ago
Labels: enhancement, One week

#82 - Agreggation of intensity values

Issue - State: open - Opened by Gscorreia89 about 3 years ago
Labels: enhancement, One week

#81 - More flexible precision calculation

Issue - State: open - Opened by Gscorreia89 about 3 years ago
Labels: enhancement, One week

#79 - Missing xlrd dependency as part of installation

Issue - State: open - Opened by carolinesands about 3 years ago

#78 - Develop

Pull Request - State: closed - Opened by Gscorreia89 over 3 years ago - 1 comment

#77 - Failure reading NMR data from different windows drives

Issue - State: closed - Opened by Gscorreia89 over 3 years ago - 1 comment
Labels: bug, One day

#76 - Add unittests and test data for Bruker ivDr version 2

Issue - State: open - Opened by Gscorreia89 over 3 years ago
Labels: enhancement, unittests, One week

#75 - Separate 'Feature ID' from 'Chemical/Compound' IDs and names

Issue - State: open - Opened by Gscorreia89 over 3 years ago
Labels: enhancement, documentation, Three days

#74 - Improve plotting functions - choice of color and general feature plots

Issue - State: open - Opened by Gscorreia89 over 3 years ago - 1 comment
Labels: enhancement, One week

#73 - added correctionSampleType to correctMSdataset to enable correction a…

Pull Request - State: closed - Opened by Gscorreia89 over 3 years ago - 1 comment

#72 - Added correctionSampleType to batch correction

Pull Request - State: closed - Opened by gordondavies over 3 years ago - 1 comment

#71 - Improvements to batch correction module - specify correction sample.

Issue - State: open - Opened by Gscorreia89 over 3 years ago - 2 comments
Labels: enhancement, Three days

#70 - Deprecation warning due to numpy.matlib on multivariateUtilities

Issue - State: closed - Opened by Gscorreia89 over 3 years ago - 1 comment
Labels: bug, Half day

#69 - Develop

Pull Request - State: closed - Opened by Gscorreia89 over 3 years ago - 1 comment

#68 - issue with some of the multivariate reports due to changes in seaborn swarmplot

Issue - State: closed - Opened by Gscorreia89 over 3 years ago - 1 comment
Labels: bug

#67 - Feature/mz ml import

Pull Request - State: closed - Opened by Gscorreia89 over 3 years ago - 1 comment

#66 - use of 'nonposy' argument deprecated

Issue - State: closed - Opened by Gscorreia89 over 3 years ago - 1 comment
Labels: bug

#65 - fix for 'nonposy' deprecation in ax.set_xscale/set_yscale

Pull Request - State: closed - Opened by Gscorreia89 over 3 years ago - 1 comment

#64 - fix for 'nonposy' deprecation in ax.set_xscale/set_yscale

Pull Request - State: closed - Opened by Gscorreia89 over 3 years ago

#63 - Passing "reference" to PQN normaliser is not implemented

Issue - State: closed - Opened by carolinesands over 3 years ago - 1 comment
Labels: bug

#62 - Develop

Pull Request - State: closed - Opened by Gscorreia89 over 3 years ago - 1 comment

#61 - Revisit isaTab exports for Metabolights

Issue - State: open - Opened by Gscorreia89 over 3 years ago
Labels: enhancement

#60 - Add advanced feature filtering for LC-MS (feature fidelity paper)

Issue - State: open - Opened by carolinesands over 3 years ago
Labels: enhancement, One month

#59 - Add data import from Skyline

Issue - State: open - Opened by Gscorreia89 over 3 years ago
Labels: enhancement

#58 - Add interactive feature plots in MS Datasets

Issue - State: open - Opened by Gscorreia89 over 3 years ago
Labels: enhancement

#57 - Check reports for dependencies on specific parameters e.g. detector voltage

Issue - State: closed - Opened by carolinesands over 3 years ago - 2 comments
Labels: Three days

#56 - MS batch correction assessment report

Issue - State: closed - Opened by carolinesands over 3 years ago - 1 comment
Labels: bug, Half day

#55 - MS feature selection report axis labelling

Issue - State: closed - Opened by carolinesands over 3 years ago - 1 comment
Labels: bug, Half day

#54 - Swap Travis to Gitub Actions

Issue - State: closed - Opened by Gscorreia89 over 3 years ago - 1 comment
Labels: bug, unittests, Three days

#53 - - add ci github actions

Pull Request - State: closed - Opened by Gscorreia89 over 3 years ago - 1 comment

#52 - Develop

Pull Request - State: closed - Opened by Gscorreia89 about 4 years ago - 1 comment

#51 - Py3.8 bugfixes

Pull Request - State: closed - Opened by Gscorreia89 about 4 years ago - 1 comment

#50 - Remove existing file deletion when multivariate report generated

Issue - State: open - Opened by carolinesands over 4 years ago
Labels: enhancement, Half day

#49 - Add 'Unknown' to Enumerations

Issue - State: open - Opened by gordondavies over 4 years ago
Labels: enhancement, Half day

#48 - Citation!

Issue - State: open - Opened by carolinesands over 4 years ago - 1 comment
Labels: documentation, One day

#47 - sklearn future warning

Issue - State: closed - Opened by carolinesands over 4 years ago - 1 comment
Labels: bug, Half day

#46 - Ability to export log at end of analysis

Issue - State: open - Opened by gordondavies over 4 years ago - 1 comment
Labels: enhancement, Three days

#45 - minor message fix

Pull Request - State: closed - Opened by lauzikaite almost 5 years ago - 1 comment

#44 - Bruker BI-QUANT ivDR version 2.0 .xml format

Issue - State: closed - Opened by Gscorreia89 over 5 years ago - 3 comments
Labels: bug, Three days

#43 - Update Travis config for future versions of Python

Pull Request - State: closed - Opened by jaketmp over 5 years ago - 1 comment

#42 - Refactor Targeted MS StudyDesign jsons to be more user friendly

Issue - State: open - Opened by Gscorreia89 over 5 years ago
Labels: enhancement

#41 - Friendly "includeFeature/Sample" synthax

Issue - State: open - Opened by Gscorreia89 over 5 years ago
Labels: enhancement

#40 - Summary Table of QC in NMR feature summary

Issue - State: open - Opened by Gscorreia89 over 5 years ago - 1 comment
Labels: bug, Three days

#39 - Import of NMR data from compressed archives

Issue - State: open - Opened by Gscorreia89 over 5 years ago - 1 comment
Labels: enhancement

#38 - Tutorial for LC-QqQ

Issue - State: open - Opened by Gscorreia89 over 5 years ago
Labels: enhancement, documentation

#37 - Repetitive message when no dilution series are present.

Issue - State: closed - Opened by Gscorreia89 over 5 years ago - 1 comment
Labels: bug, Half day

#36 - Batch correction fails when a batch has no study reference samples

Issue - State: open - Opened by Gscorreia89 over 5 years ago
Labels: bug, Half day

#35 - Read acquisition parameters from mzML

Issue - State: closed - Opened by Gscorreia89 over 5 years ago - 2 comments
Labels: enhancement, One week

#34 - Split NMR Targeted from LC-QqQ Targeted objects

Issue - State: open - Opened by Gscorreia89 over 5 years ago - 4 comments
Labels: enhancement, One month

#33 - Duplicated 'Feature Name' corrupts excludeFeatures()

Issue - State: open - Opened by lauzikaite over 5 years ago - 2 comments
Labels: bug, Three days

#32 - Develop

Pull Request - State: closed - Opened by Gscorreia89 over 5 years ago

#31 - Import of XCMS data made with Peaktable excludes samples

Issue - State: open - Opened by Johostman over 5 years ago - 3 comments
Labels: enhancement, documentation

#30 - Init `NMR` and `MSDataset`s from csv exports

Pull Request - State: closed - Opened by jaketmp about 6 years ago - 1 comment

#29 - General import

Pull Request - State: closed - Opened by jaketmp over 6 years ago - 1 comment

#28 - Add the ability to concatenate datasets

Issue - State: open - Opened by jaketmp over 6 years ago - 2 comments
Labels: enhancement

#27 - Refactor `plotFeatureLOQ()` to plot not more than _n_ features per plot

Issue - State: closed - Opened by jaketmp over 6 years ago - 1 comment

#26 - TargetedDataset import of Bruker quant data failure

Issue - State: closed - Opened by jaketmp over 6 years ago

#25 - Minor fixes

Pull Request - State: closed - Opened by jaketmp over 6 years ago - 1 comment

#24 - nmrML import

Issue - State: open - Opened by jaketmp over 6 years ago - 3 comments
Labels: enhancement

#23 - Implement a map function

Issue - State: open - Opened by jaketmp over 6 years ago
Labels: enhancement

#22 - ISATAB export hardcodes optional columns

Issue - State: closed - Opened by jaketmp over 6 years ago - 2 comments
Labels: bug

#21 - Code tidying prior to publication

Pull Request - State: closed - Opened by jaketmp over 6 years ago - 1 comment

#20 - 'batch correction assessment' raises an error if no LinerityReference sample are present

Issue - State: closed - Opened by jaketmp over 6 years ago - 3 comments
Labels: bug

#19 - mzTab Output

Issue - State: open - Opened by jaketmp over 6 years ago
Labels: enhancement

#18 - plotLoadingsInteractive() falls over with targeted data

Issue - State: closed - Opened by jaketmp over 6 years ago - 1 comment
Labels: bug

#17 - Feature/isatab updated

Pull Request - State: closed - Opened by nsadawi over 6 years ago - 3 comments

#16 - Feature/isatab updated

Pull Request - State: closed - Opened by nsadawi over 6 years ago

#15 - Tutorial Improvements

Issue - State: closed - Opened by jaketmp over 6 years ago - 1 comment
Labels: documentation

#14 - Bounds calculations when plotting histograms by group are wrong

Issue - State: closed - Opened by jaketmp over 6 years ago
Labels: bug