Ecosyste.ms: Issues

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GitHub / pharmpy/pharmr issues and pull requests

#176 - Add tests for code generation

Issue - State: open - Opened by stellabelin 16 days ago
Labels: dx

#175 - Centralize R conversion code

Issue - State: open - Opened by stellabelin 16 days ago
Labels: dx

#174 - AMD error in pharmr 1.0.1

Issue - State: closed - Opened by hugo-maas 20 days ago - 1 comment
Labels: bug

#173 - AssertionError reading in csv data in pharmr 1.0.1

Issue - State: closed - Opened by hugo-maas 20 days ago - 1 comment
Labels: bug

#171 - Predictions not showing correctly

Issue - State: open - Opened by stellabelin about 2 months ago

#170 - Problem with bottom up algorithm in run_iivsearch

Issue - State: closed - Opened by yahanhsutw 3 months ago - 2 comments

#169 - Check if input value is integer before conversion

Issue - State: open - Opened by stellabelin 5 months ago - 2 comments

#168 - symbol V is not defined - IIV search

Issue - State: open - Opened by artikandms 5 months ago - 2 comments

#167 - AMD crash at stage RUV search

Issue - State: closed - Opened by artikandms 5 months ago - 7 comments

#166 - Set up virtual environment when installing

Issue - State: open - Opened by stellabelin 5 months ago

#165 - problem with predictions, residuals, and plots functions

Issue - State: closed - Opened by artikandms 5 months ago - 1 comment
Labels: bug

#164 - Automatic update of SystemRequirements Python version

Issue - State: open - Opened by rikardn 6 months ago

#163 - Create check for supported Python versions

Issue - State: open - Opened by rikardn 6 months ago

#162 - Use requirements.txt for Python dependencies

Issue - State: open - Opened by stellabelin 6 months ago

#161 - structsearch problem

Issue - State: closed - Opened by artikandms 6 months ago - 10 comments

#160 - many problems with run_modelsearch

Issue - State: closed - Opened by artikandms 6 months ago - 5 comments

#159 - Show memory use of Pharmpy-objects

Issue - State: open - Opened by stellabelin 6 months ago

#155 - Conversion of iovsearch option for explicit distribution crashes

Issue - State: open - Opened by rikardn 7 months ago
Labels: bug

#154 - print_model_code returns NULL

Issue - State: closed - Opened by rikardn 7 months ago - 2 comments

#153 - Handle tuple conversion

Issue - State: open - Opened by stellabelin 7 months ago

#152 - Integer conversion within e.g. lists

Issue - State: open - Opened by stellabelin 7 months ago

#149 - PKPD equations with unusual drug concentration term.

Issue - State: open - Opened by Orwa-bit 10 months ago

#148 - Use composite actions

Pull Request - State: closed - Opened by stellabelin 10 months ago

#147 - Use type hints for return type in documentation

Issue - State: open - Opened by stellabelin 10 months ago

#144 - Suggestion to add init_sigma option to the amd tool

Issue - State: open - Opened by schaedeli about 1 year ago

#143 - Problem with nlmixr in windows

Issue - State: closed - Opened by OmarAshkar about 1 year ago - 3 comments
Labels: bug

#142 - When I run AMD in python, it always stops at ruvsearch and reports an error

Issue - State: open - Opened by leahww about 1 year ago - 4 comments

#141 - Document manual pharmr installation

Issue - State: open - Opened by rikardn over 1 year ago
Labels: documentation

#140 - configuration file not found - suggestion for improved documentation

Issue - State: open - Opened by klosinho00 over 1 year ago - 1 comment

#139 - Support ?pharmr

Issue - State: open - Opened by rikardn over 1 year ago
Labels: enhancement

#138 - Handle multiindex in ModelfitResults

Issue - State: open - Opened by rikardn over 1 year ago
Labels: bug

#137 - Handle version warning in deploy workflow

Issue - State: open - Opened by stellabelin over 1 year ago
Labels: dx

#136 - Use newer Python for testing

Issue - State: closed - Opened by stellabelin over 1 year ago - 1 comment
Labels: dx

#135 - Predict outliers and predict influential individuals

Issue - State: open - Opened by SaraSALHI2 over 1 year ago - 2 comments
Labels: question

#134 - Add tests to detect regressions

Issue - State: open - Opened by stellabelin almost 2 years ago - 1 comment
Labels: dx

#132 - Refactor build functions

Pull Request - State: closed - Opened by stellabelin almost 2 years ago

#131 - Fix failing reset_index()-test

Issue - State: open - Opened by stellabelin almost 2 years ago
Labels: bug

#129 - Evaluate input arguments to wrapper functions

Issue - State: open - Opened by stellabelin almost 2 years ago - 1 comment

#128 - Problems with default value of run_ruvsearch

Issue - State: open - Opened by rikardn almost 2 years ago - 1 comment
Labels: bug

#127 - Reset index of all dataframe attributes in Results

Issue - State: closed - Opened by stellabelin almost 2 years ago - 1 comment

#125 - AttributeError: 'Model' object has no attribute 'index'

Issue - State: closed - Opened by joaoabr almost 2 years ago - 4 comments

#124 - Use Python AST to convert examples

Issue - State: open - Opened by stellabelin almost 2 years ago

#123 - Make pandas and numpy objects round-trippable

Issue - State: open - Opened by stellabelin almost 2 years ago - 1 comment

#122 - Do not return NULL in print functions

Issue - State: open - Opened by stellabelin almost 2 years ago

#121 - Python functions that write to stdout does not work in R

Issue - State: open - Opened by rikardn almost 2 years ago - 1 comment
Labels: bug

#120 - Fix NOTE for truncated example

Issue - State: open - Opened by stellabelin almost 2 years ago
Labels: documentation

#119 - Add link to website on Github

Issue - State: open - Opened by stellabelin almost 2 years ago

#118 - Load pharmpy when loading pharmr

Issue - State: open - Opened by stellabelin almost 2 years ago - 4 comments

#117 - Exception: "AttributeError('peripheral_compartments')"

Issue - State: closed - Opened by schaedeli about 2 years ago - 7 comments

#113 - Remove input objects in docstrings which cannot be used in R

Issue - State: open - Opened by stellabelin about 2 years ago - 1 comment

#112 - Fix only reset index on multiindex

Pull Request - State: closed - Opened by stellabelin about 2 years ago

#111 - [dev] Fix deployment by fixing version tag lookup

Pull Request - State: closed - Opened by pharmpy-dev-123 about 2 years ago

#108 - AttributeError: 'NoneType' object has no attribute 'ofv'

Issue - State: closed - Opened by joaoabr about 2 years ago - 5 comments

#106 - Get error message when updating parameter from R

Issue - State: open - Opened by rikardn about 4 years ago - 1 comment
Labels: bug

#105 - Handle vectors with strings that have length 1

Issue - State: open - Opened by stellabelin about 2 years ago - 2 comments

#104 - Print full Python stack

Pull Request - State: closed - Opened by stellabelin about 2 years ago - 1 comment

#103 - Do not depend on altair

Issue - State: open - Opened by rikardn about 2 years ago

#100 - modelsearch crashes for single ZO elimination search space

Issue - State: closed - Opened by joaoabr over 2 years ago - 6 comments
Labels: bug

#99 - rank in modelsearch results

Issue - State: closed - Opened by joaoabr about 2 years ago - 1 comment

#98 - Add tags at release

Pull Request - State: closed - Opened by stellabelin about 2 years ago

#97 - Better documentation of reticulate environment

Issue - State: open - Opened by stellabelin about 2 years ago

#96 - Use kwargs inside R-wrapper call to Python function

Pull Request - State: closed - Opened by stellabelin about 2 years ago

#95 - Fail to output the final selected model file

Issue - State: closed - Opened by liuxl17 about 2 years ago - 3 comments

#93 - append_estimation_step_options() and integers

Issue - State: closed - Opened by joaoabr about 2 years ago - 3 comments

#92 - update initial estimates using Parameter()?

Issue - State: closed - Opened by joaoabr about 2 years ago - 5 comments

#90 - IOVsearch issue/ cannot use another column than OCC to define the occasions

Issue - State: closed - Opened by cossonvalerie about 2 years ago - 5 comments
Labels: waiting for information

#88 - COV search: TypeError("'float' object cannot be interpreted as an integer")

Issue - State: closed - Opened by joaoabr about 2 years ago - 2 comments

#87 - Handle nested lists in documentation auto translation

Issue - State: open - Opened by joaoabr about 2 years ago - 1 comment
Labels: bug, documentation

#86 - run_amd: covariate names not recognized

Issue - State: closed - Opened by schaedeli about 2 years ago - 3 comments
Labels: bug

#83 - Automate CRAN release

Issue - State: open - Opened by stellabelin over 2 years ago

#80 - Handle integers in options

Issue - State: open - Opened by stellabelin over 2 years ago - 7 comments

#79 - No results summary after run_modelsearch

Issue - State: closed - Opened by schaedeli over 2 years ago - 4 comments

#78 - Problem with default `groups` of resmod

Issue - State: closed - Opened by cossonvalerie over 2 years ago - 2 comments

#73 - Inconsistent parsing of comments from $THETA and $OMEGA blocks in modelfit_results

Issue - State: open - Opened by emiliesg over 2 years ago - 5 comments
Labels: waiting for information

#72 - Create cheat sheet for pharmr

Issue - State: open - Opened by stellabelin over 2 years ago
Labels: enhancement

#71 - Results reported from a failed run (run_modelsearch)

Issue - State: closed - Opened by schaedeli over 2 years ago - 2 comments

#70 - Discrepancy between iiv_strategy setting and metadata.json information

Issue - State: closed - Opened by schaedeli over 2 years ago - 3 comments
Labels: bug

#69 - Error with RATE=-2 in the dataset

Issue - State: open - Opened by joaoabr over 2 years ago

#68 - Error in modelsearch exhaustive with iiv_strategy=3

Issue - State: closed - Opened by schaedeli over 2 years ago - 2 comments
Labels: bug

#64 - Error message with run_tool related to DAtaInfo

Issue - State: closed - Opened by SylvieRetout over 2 years ago - 6 comments
Labels: bug

#63 - checking model results

Issue - State: open - Opened by joaoabr over 2 years ago - 4 comments

#61 - Add function to simplify installation of tflite

Issue - State: open - Opened by rikardn over 2 years ago
Labels: enhancement

#60 - Missing numbers should be NA

Issue - State: open - Opened by stellabelin over 2 years ago

#59 - Use Pharmpy-repo instead of pip

Issue - State: closed - Opened by stellabelin over 2 years ago - 1 comment

#58 - Handle optional dependencies

Issue - State: open - Opened by stellabelin over 2 years ago

#54 - Column types causes error when creating csv

Issue - State: open - Opened by stellabelin almost 3 years ago

#52 - set_additive_error_model and set_combined_error_model

Issue - State: open - Opened by joaoabr almost 3 years ago - 2 comments
Labels: documentation

#42 - Missing SSL module in Windows when installing Pharmpy

Issue - State: open - Opened by stellabelin almost 3 years ago

#39 - set_peripheral_compartments

Issue - State: closed - Opened by SimonBuatois almost 3 years ago - 1 comment

#36 - set_estimation_step

Issue - State: closed - Opened by SimonBuatois almost 3 years ago - 1 comment

#34 - remove_peripheral_compartment

Issue - State: closed - Opened by SimonBuatois almost 3 years ago - 1 comment

#30 - remove_estimation_step

Issue - State: closed - Opened by SimonBuatois almost 3 years ago - 1 comment

#26 - documentation example in read_model_from_string

Issue - State: closed - Opened by joaoabr almost 3 years ago - 3 comments