Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / pharmpy/pharmpy issues and pull requests

#3096 - Bump pyright from 1.1.366 to 1.1.367

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#3095 - Example code produces error on Windows with conda

Issue - State: closed - Opened by falkenhagen 5 months ago - 6 comments

#3094 - How to allocate specified number of cpus while running in SLURM?

Issue - State: open - Opened by eraimundez 5 months ago - 3 comments
Labels: enhancement

#3093 - Bump more-itertools from 10.2.0 to 10.3.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3092 - Bump prompt-toolkit from 3.0.46 to 3.0.47

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3091 - Bump pkginfo from 1.11.0 to 1.11.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3090 - Bump packaging from 24.0 to 24.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3089 - Bump typing-extensions from 4.12.1 to 4.12.2

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3088 - Bump tornado from 6.4 to 6.4.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3087 - iivsearch: wrong output model

Issue - State: open - Opened by rosemarychen99 6 months ago - 1 comment

#3086 - Bump tox from 4.15.0 to 4.15.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3085 - Bump pyright from 1.1.365 to 1.1.366

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3084 - Bump pytest from 8.2.1 to 8.2.2

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3083 - Bump nodeenv from 1.9.0 to 1.9.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3082 - Bump prompt-toolkit from 3.0.45 to 3.0.46

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3081 - Bump zipp from 3.19.1 to 3.19.2

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3080 - Bump cryptography from 42.0.7 to 42.0.8

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3079 - Bump fsspec from 2024.5.0 to 2024.6.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3078 - error during run_amd

Issue - State: open - Opened by rosemarychen99 6 months ago - 1 comment

#3077 - Bump ipython from 8.24.0 to 8.25.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3076 - Bump pkginfo from 1.10.0 to 1.11.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3075 - Bump typing-extensions from 4.12.0 to 4.12.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3074 - Bump dask from 2024.5.1 to 2024.5.2

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3073 - Bump certifi from 2024.2.2 to 2024.6.2

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3072 - Bump zipp from 3.19.0 to 3.19.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3071 - Bump distributed from 2024.5.1 to 2024.5.2

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 2 comments
Labels: dependencies

#3069 - Indexing argument in modeling functions

Issue - State: open - Opened by JohanWBorg 6 months ago

#3068 - change index of appended estimation step function

Pull Request - State: closed - Opened by JohanWBorg 6 months ago

#3067 - Empty results as input to tools is broken

Issue - State: open - Opened by stellabelin 6 months ago
Labels: bug

#3066 - Bump requests from 2.32.2 to 2.32.3

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3065 - Bump sympy from 1.12 to 1.12.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3064 - Bump pyright from 1.1.364 to 1.1.365

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3063 - Add estimation option MCETA=1000 when linearizing model

Pull Request - State: closed - Opened by JohanWBorg 6 months ago

#3062 - Bump jupyterlab-widgets from 3.0.10 to 3.0.11

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#3061 - Bump prompt-toolkit from 3.0.44 to 3.0.45

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#3060 - Bump nodeenv from 1.8.0 to 1.9.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#3059 - Bump pydata-sphinx-theme from 0.15.2 to 0.15.3

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#3058 - Bump ipywidgets from 8.1.2 to 8.1.3

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 2 comments
Labels: dependencies

#3057 - Bump widgetsnbextension from 4.0.10 to 4.0.11

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#3056 - Add posterior_eta_type to EstimationStep

Pull Request - State: open - Opened by JohanWBorg 6 months ago

#3055 - Bump prompt-toolkit from 3.0.43 to 3.0.44

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3054 - Add function to rename symbols in model

Issue - State: open - Opened by stellabelin 6 months ago
Labels: enhancement

#3053 - Update mBIC implementation

Pull Request - State: closed - Opened by stellabelin 6 months ago

#3052 - Allow to add IOV without IIV

Pull Request - State: open - Opened by antoniaih 6 months ago

#3051 - Bump zipp from 3.18.2 to 3.19.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3050 - Bump scipy from 1.13.0 to 1.13.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3049 - Bump jupyter-client from 8.6.1 to 8.6.2

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3048 - Bump typing-extensions from 4.11.0 to 4.12.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3047 - Fix issue with create_report crashing for nlmixr models

Pull Request - State: open - Opened by JohanWBorg 6 months ago

#3046 - Bump pyright from 1.1.363 to 1.1.364

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3045 - Creation of a dummy eta when removing all IIV etas

Issue - State: closed - Opened by antoniaih 6 months ago - 3 comments
Labels: bug

#3044 - Store input/final model within each tool

Pull Request - State: closed - Opened by JohanWBorg 6 months ago

#3043 - Support linearization within IIVsearch

Pull Request - State: closed - Opened by JohanWBorg 6 months ago - 1 comment

#3042 - Bump requests from 2.32.1 to 2.32.2

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3040 - results.csv for pd.Series is bad

Issue - State: open - Opened by rikardn 6 months ago
Labels: bug

#3037 - Update nlmixr fitting

Pull Request - State: closed - Opened by JohanWBorg 6 months ago

#3036 - Bump requests from 2.31.0 to 2.32.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3035 - covsearch: wrong final model is output in the result file

Issue - State: closed - Opened by rosemarychen99 6 months ago - 1 comment

#3034 - Avoid get_model_features in backwards search

Pull Request - State: closed - Opened by JohanWBorg 6 months ago

#3033 - iivsearch json result summary tool missing information

Issue - State: closed - Opened by rosemarychen99 6 months ago - 4 comments

#3032 - Bump pytest from 8.2.0 to 8.2.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3031 - Bump distributed from 2024.5.0 to 2024.5.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#3030 - Bump dask from 2024.5.0 to 2024.5.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3029 - Bump pytest-asyncio from 0.23.6 to 0.23.7

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3027 - Use new model database when running nlmixr

Pull Request - State: closed - Opened by JohanWBorg 6 months ago

#3026 - Bump twine from 5.0.0 to 5.1.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3025 - Bump zipp from 3.18.1 to 3.18.2

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3024 - Restructure linearize tool

Pull Request - State: closed - Opened by JohanWBorg 6 months ago - 1 comment

#3023 - Bump fsspec from 2024.3.1 to 2024.5.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3022 - Bump pyright from 1.1.362 to 1.1.363

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3021 - Bump platformdirs from 4.2.1 to 4.2.2

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3020 - Change initial estimate of thetas for CAT2

Pull Request - State: closed - Opened by JohanWBorg 6 months ago

#3019 - Change store_key to store_model_entry

Pull Request - State: closed - Opened by antoniaih 6 months ago

#3017 - symbolic link path suggestion

Issue - State: closed - Opened by rosemarychen99 6 months ago - 2 comments
Labels: bug

#3016 - improvement for model retry comparison

Issue - State: open - Opened by rosemarychen99 6 months ago

#3015 - Bump lxml from 5.2.1 to 5.2.2

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3014 - Bump keyring from 25.2.0 to 25.2.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3013 - Bump virtualenv from 20.26.1 to 20.26.2

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#3011 - Bump pyright from 1.1.361 to 1.1.362

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#3010 - Update drug metabolite documentation

Pull Request - State: closed - Opened by JohanWBorg 7 months ago - 1 comment

#3009 - Raise error if oral administration is combined with instantaneous absorption

Pull Request - State: closed - Opened by JohanWBorg 7 months ago - 1 comment

#3008 - Use another column for occasion in add_iov example

Issue - State: open - Opened by stellabelin 7 months ago
Labels: docs

#3007 - Delinearization procedure

Pull Request - State: closed - Opened by JohanWBorg 7 months ago

#3006 - structsearch TMDD : ValueError: nan is not in list

Issue - State: open - Opened by artikandms 7 months ago - 7 comments

#3005 - Ignore input and final model in tmdd structsearch

Pull Request - State: closed - Opened by antoniaih 7 months ago

#3004 - Fix integrationstest for test_resume

Pull Request - State: closed - Opened by antoniaih 7 months ago

#3003 - parsing error running nlmixr2 model

Issue - State: closed - Opened by roninsightrx 7 months ago - 2 comments
Labels: bug

#3002 - Bump cryptography from 42.0.6 to 42.0.7

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#3001 - Bump partd from 1.4.1 to 1.4.2

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#3000 - Bump rpds-py from 0.18.0 to 0.18.1

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#2999 - Add extracted derivatives to ModelfitResults for NONMEM models

Pull Request - State: closed - Opened by JohanWBorg 7 months ago - 1 comment

#2998 - Update extracted derivatives within NONMEM code

Pull Request - State: closed - Opened by JohanWBorg 7 months ago

#2997 - Update integration tests after adding input and final model

Pull Request - State: closed - Opened by antoniaih 7 months ago