Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / pharmpy/pharmpy issues and pull requests

#3020 - Change initial estimate of thetas for CAT2

Pull Request - State: closed - Opened by JohanWBorg 5 months ago

#3019 - Change store_key to store_model_entry

Pull Request - State: closed - Opened by antoniaih 5 months ago

#3017 - symbolic link path suggestion

Issue - State: closed - Opened by rosemarychen99 5 months ago - 2 comments
Labels: bug

#3016 - improvement for model retry comparison

Issue - State: open - Opened by rosemarychen99 5 months ago

#3015 - Bump lxml from 5.2.1 to 5.2.2

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#3014 - Bump keyring from 25.2.0 to 25.2.1

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#3013 - Bump virtualenv from 20.26.1 to 20.26.2

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#3011 - Bump pyright from 1.1.361 to 1.1.362

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#3010 - Update drug metabolite documentation

Pull Request - State: closed - Opened by JohanWBorg 5 months ago - 1 comment

#3009 - Raise error if oral administration is combined with instantaneous absorption

Pull Request - State: closed - Opened by JohanWBorg 5 months ago - 1 comment

#3008 - Use another column for occasion in add_iov example

Issue - State: open - Opened by stellabelin 5 months ago
Labels: docs

#3007 - Delinearization procedure

Pull Request - State: closed - Opened by JohanWBorg 5 months ago

#3006 - structsearch TMDD : ValueError: nan is not in list

Issue - State: open - Opened by artikandms 5 months ago - 7 comments

#3005 - Ignore input and final model in tmdd structsearch

Pull Request - State: closed - Opened by antoniaih 5 months ago

#3004 - Fix integrationstest for test_resume

Pull Request - State: closed - Opened by antoniaih 5 months ago

#3003 - parsing error running nlmixr2 model

Issue - State: closed - Opened by roninsightrx 5 months ago - 2 comments
Labels: bug

#3002 - Bump cryptography from 42.0.6 to 42.0.7

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#3001 - Bump partd from 1.4.1 to 1.4.2

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#3000 - Bump rpds-py from 0.18.0 to 0.18.1

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2999 - Add extracted derivatives to ModelfitResults for NONMEM models

Pull Request - State: closed - Opened by JohanWBorg 5 months ago - 1 comment

#2998 - Update extracted derivatives within NONMEM code

Pull Request - State: closed - Opened by JohanWBorg 5 months ago

#2997 - Update integration tests after adding input and final model

Pull Request - State: closed - Opened by antoniaih 5 months ago

#2996 - Disallow unsupported covariate effect types in MFL parsing

Pull Request - State: closed - Opened by JohanWBorg 5 months ago - 3 comments

#2994 - Alternative categorical covariate effect (CAT2)

Pull Request - State: closed - Opened by JohanWBorg 5 months ago

#2993 - Bump babel from 2.14.0 to 2.15.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies

#2992 - Bump dask from 2024.4.2 to 2024.5.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 2 comments
Labels: dependencies

#2991 - Bump jinja2 from 3.1.3 to 3.1.4

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies

#2990 - Bump distributed from 2024.4.2 to 2024.5.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 2 comments
Labels: dependencies

#2989 - Bump cryptography from 42.0.5 to 42.0.6

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies

#2988 - Bump pygments from 2.17.2 to 2.18.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies

#2987 - Problem with run_iivsearch

Issue - State: closed - Opened by rosemarychen99 5 months ago - 4 comments

#2986 - model search result for final_model returns NULL

Issue - State: closed - Opened by rosemarychen99 5 months ago - 3 comments
Labels: duplicate

#2985 - Update example in AMD user guide

Issue - State: open - Opened by stellabelin 5 months ago
Labels: docs

#2983 - Complete parsing of NONMEM derivatives

Pull Request - State: closed - Opened by JohanWBorg 5 months ago

#2982 - Add input and final model to models

Pull Request - State: closed - Opened by antoniaih 5 months ago

#2981 - need to add ONLYSIM in set_simulation()

Issue - State: closed - Opened by rosemarychen99 5 months ago - 1 comment
Labels: bug

#2980 - Add ModelFeatures.get_number_of_features

Pull Request - State: closed - Opened by stellabelin 5 months ago

#2979 - Function for adding and removing derivatives

Pull Request - State: closed - Opened by JohanWBorg 5 months ago

#2978 - Bump pyzmq from 26.0.2 to 26.0.3

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2977 - Bump pyright from 1.1.360 to 1.1.361

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2976 - Bump referencing from 0.35.0 to 0.35.1

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2975 - Bump jsonschema from 4.21.1 to 4.22.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2974 - problem in print_model_code() and write_model()

Issue - State: open - Opened by rosemarychen99 5 months ago - 5 comments

#2972 - Add an example to getting_started

Pull Request - State: closed - Opened by antoniaih 5 months ago

#2971 - problem with add_iov

Issue - State: open - Opened by rosemarychen99 5 months ago - 2 comments

#2970 - Bump nbconvert from 7.16.3 to 7.16.4

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2969 - Bump virtualenv from 20.26.0 to 20.26.1

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2968 - Bump filelock from 3.13.4 to 3.14.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2967 - Bump pyproject-hooks from 1.0.0 to 1.1.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2966 - Bump tox from 4.14.2 to 4.15.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2965 - Bump keyring from 25.1.0 to 25.2.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2964 - Bump ipython from 8.23.0 to 8.24.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2963 - Bump pytest from 8.1.1 to 8.2.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2962 - Bump pytest-xdist from 3.5.0 to 3.6.1

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2961 - set_dataset() does not work

Issue - State: open - Opened by rosemarychen99 5 months ago - 3 comments

#2960 - Prediction/residual names stored as tuples with certain allowed values

Pull Request - State: closed - Opened by JohanWBorg 5 months ago - 1 comment

#2959 - Remove model from table_final_model_parameter_estimates

Pull Request - State: closed - Opened by antoniaih 5 months ago

#2958 - Raise if symbol is an integer

Pull Request - State: closed - Opened by antoniaih 5 months ago

#2957 - Add modelfit_results to results object

Pull Request - State: closed - Opened by antoniaih 5 months ago

#2956 - Restructure derivative handling

Pull Request - State: closed - Opened by JohanWBorg 5 months ago

#2955 - Bump black from 24.4.1 to 24.4.2

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2954 - Remove common create_results function for tools

Issue - State: open - Opened by stellabelin 5 months ago

#2953 - Implement SAMBA in covsearch

Issue - State: open - Opened by rikardn 5 months ago - 2 comments
Labels: enhancement

#2952 - Parse posterior eta means properly when reading NONMEM ModelfitResults

Issue - State: open - Opened by rikardn 5 months ago
Labels: enhancement

#2951 - Parsing of mode/mean for posterior etas in NONMEM models

Issue - State: open - Opened by rikardn 5 months ago
Labels: enhancement

#2950 - Update NONMEM model for mode or mean posterior etas

Issue - State: open - Opened by rikardn 5 months ago
Labels: enhancement

#2948 - Add way of selecting between mode and mean for posterior etas

Issue - State: open - Opened by rikardn 5 months ago
Labels: enhancement

#2947 - Add documentation for simulation tool

Pull Request - State: closed - Opened by antoniaih 5 months ago

#2946 - Bump referencing from 0.34.0 to 0.35.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2945 - Bump black from 24.4.0 to 24.4.1

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2944 - Bump pyright from 1.1.359 to 1.1.360

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2943 - Refactor canonicalize statements

Pull Request - State: closed - Opened by antoniaih 5 months ago

#2942 - Allow multiple arguments when defining derivative in Expr

Pull Request - State: closed - Opened by JohanWBorg 5 months ago - 1 comment

#2941 - Convert residuals to DataFrame in outlier_count

Pull Request - State: closed - Opened by JohanWBorg 5 months ago

#2940 - Bump docutils from 0.21.1 to 0.21.2

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2939 - Bump platformdirs from 4.2.0 to 4.2.1

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2938 - Bump tinycss2 from 1.2.1 to 1.3.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2937 - Bump virtualenv from 20.25.3 to 20.26.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2936 - Adaptive scope reduction and max eval option for covsearch

Pull Request - State: closed - Opened by JohanWBorg 5 months ago - 2 comments

#2935 - Rework mBIC in tools

Issue - State: open - Opened by stellabelin 5 months ago - 1 comment

#2934 - Add test coverage for model.py

Pull Request - State: closed - Opened by antoniaih 5 months ago

#2931 - TMDD via run_amd not generating a final basic PK model

Issue - State: open - Opened by Orwa-bit 5 months ago - 1 comment

#2930 - TMDD via run

Issue - State: closed - Opened by Orwa-bit 5 months ago

#2929 - PKPD iiv_search and ruv_search

Issue - State: open - Opened by Orwa-bit 5 months ago - 2 comments

#2928 - Bump traitlets from 5.14.2 to 5.14.3

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2927 - Bump distributed from 2024.4.1 to 2024.4.2

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies

#2926 - Bump pluggy from 1.4.0 to 1.5.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2925 - Bump sphinx from 7.3.6 to 7.3.7

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2924 - Bump dask from 2024.4.1 to 2024.4.2

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2923 - Bump pyzmq from 26.0.0 to 26.0.2

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#2922 - It's hard to get started.

Issue - State: open - Opened by leahww 5 months ago - 4 comments

#2921 - Fix parsing of statements

Pull Request - State: closed - Opened by antoniaih 5 months ago