Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / pharmpy/pharmpy issues and pull requests
#3020 - Change initial estimate of thetas for CAT2
Pull Request -
State: closed - Opened by JohanWBorg 5 months ago
#3019 - Change store_key to store_model_entry
Pull Request -
State: closed - Opened by antoniaih 5 months ago
#3018 - error message regarding the cov search in run_amd
Issue -
State: open - Opened by rosemarychen99 5 months ago
#3017 - symbolic link path suggestion
Issue -
State: closed - Opened by rosemarychen99 5 months ago
- 2 comments
Labels: bug
#3016 - improvement for model retry comparison
Issue -
State: open - Opened by rosemarychen99 5 months ago
#3015 - Bump lxml from 5.2.1 to 5.2.2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#3014 - Bump keyring from 25.2.0 to 25.2.1
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#3013 - Bump virtualenv from 20.26.1 to 20.26.2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#3012 - run_amd error message regarding TypeError_calculate_confidence_interval_of_quantile()
Issue -
State: open - Opened by rosemarychen99 5 months ago
- 7 comments
#3011 - Bump pyright from 1.1.361 to 1.1.362
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#3010 - Update drug metabolite documentation
Pull Request -
State: closed - Opened by JohanWBorg 5 months ago
- 1 comment
#3009 - Raise error if oral administration is combined with instantaneous absorption
Pull Request -
State: closed - Opened by JohanWBorg 5 months ago
- 1 comment
#3008 - Use another column for occasion in add_iov example
Issue -
State: open - Opened by stellabelin 5 months ago
Labels: docs
#3007 - Delinearization procedure
Pull Request -
State: closed - Opened by JohanWBorg 5 months ago
#3006 - structsearch TMDD : ValueError: nan is not in list
Issue -
State: open - Opened by artikandms 5 months ago
- 7 comments
#3005 - Ignore input and final model in tmdd structsearch
Pull Request -
State: closed - Opened by antoniaih 5 months ago
#3004 - Fix integrationstest for test_resume
Pull Request -
State: closed - Opened by antoniaih 5 months ago
#3003 - parsing error running nlmixr2 model
Issue -
State: closed - Opened by roninsightrx 5 months ago
- 2 comments
Labels: bug
#3002 - Bump cryptography from 42.0.6 to 42.0.7
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#3001 - Bump partd from 1.4.1 to 1.4.2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#3000 - Bump rpds-py from 0.18.0 to 0.18.1
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2999 - Add extracted derivatives to ModelfitResults for NONMEM models
Pull Request -
State: closed - Opened by JohanWBorg 5 months ago
- 1 comment
#2998 - Update extracted derivatives within NONMEM code
Pull Request -
State: closed - Opened by JohanWBorg 5 months ago
#2997 - Update integration tests after adding input and final model
Pull Request -
State: closed - Opened by antoniaih 5 months ago
#2996 - Disallow unsupported covariate effect types in MFL parsing
Pull Request -
State: closed - Opened by JohanWBorg 5 months ago
- 3 comments
#2995 - Incorrect mixed bic calculation for transit compartmental model with depot
Issue -
State: open - Opened by rosemarychen99 5 months ago
#2994 - Alternative categorical covariate effect (CAT2)
Pull Request -
State: closed - Opened by JohanWBorg 5 months ago
#2993 - Bump babel from 2.14.0 to 2.15.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies
#2992 - Bump dask from 2024.4.2 to 2024.5.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 2 comments
Labels: dependencies
#2991 - Bump jinja2 from 3.1.3 to 3.1.4
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies
#2990 - Bump distributed from 2024.4.2 to 2024.5.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 2 comments
Labels: dependencies
#2989 - Bump cryptography from 42.0.5 to 42.0.6
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies
#2988 - Bump pygments from 2.17.2 to 2.18.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies
#2987 - Problem with run_iivsearch
Issue -
State: closed - Opened by rosemarychen99 5 months ago
- 4 comments
#2986 - model search result for final_model returns NULL
Issue -
State: closed - Opened by rosemarychen99 5 months ago
- 3 comments
Labels: duplicate
#2985 - Update example in AMD user guide
Issue -
State: open - Opened by stellabelin 5 months ago
Labels: docs
#2984 - question : Can a dataset be updated after creating a model with pharmpy/pharmr functions ?
Issue -
State: closed - Opened by artikandms 5 months ago
- 2 comments
#2983 - Complete parsing of NONMEM derivatives
Pull Request -
State: closed - Opened by JohanWBorg 5 months ago
#2982 - Add input and final model to models
Pull Request -
State: closed - Opened by antoniaih 5 months ago
#2981 - need to add ONLYSIM in set_simulation()
Issue -
State: closed - Opened by rosemarychen99 5 months ago
- 1 comment
Labels: bug
#2980 - Add ModelFeatures.get_number_of_features
Pull Request -
State: closed - Opened by stellabelin 5 months ago
#2979 - Function for adding and removing derivatives
Pull Request -
State: closed - Opened by JohanWBorg 5 months ago
#2978 - Bump pyzmq from 26.0.2 to 26.0.3
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2977 - Bump pyright from 1.1.360 to 1.1.361
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2976 - Bump referencing from 0.35.0 to 0.35.1
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2975 - Bump jsonschema from 4.21.1 to 4.22.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2974 - problem in print_model_code() and write_model()
Issue -
State: open - Opened by rosemarychen99 5 months ago
- 5 comments
#2973 - Create default datainfo in create_basic_pk_model for no dataset
Pull Request -
State: closed - Opened by stellabelin 5 months ago
#2972 - Add an example to getting_started
Pull Request -
State: closed - Opened by antoniaih 5 months ago
#2971 - problem with add_iov
Issue -
State: open - Opened by rosemarychen99 5 months ago
- 2 comments
#2970 - Bump nbconvert from 7.16.3 to 7.16.4
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2969 - Bump virtualenv from 20.26.0 to 20.26.1
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2968 - Bump filelock from 3.13.4 to 3.14.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2967 - Bump pyproject-hooks from 1.0.0 to 1.1.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2966 - Bump tox from 4.14.2 to 4.15.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2965 - Bump keyring from 25.1.0 to 25.2.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2964 - Bump ipython from 8.23.0 to 8.24.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2963 - Bump pytest from 8.1.1 to 8.2.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2962 - Bump pytest-xdist from 3.5.0 to 3.6.1
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2961 - set_dataset() does not work
Issue -
State: open - Opened by rosemarychen99 5 months ago
- 3 comments
#2960 - Prediction/residual names stored as tuples with certain allowed values
Pull Request -
State: closed - Opened by JohanWBorg 5 months ago
- 1 comment
#2959 - Remove model from table_final_model_parameter_estimates
Pull Request -
State: closed - Opened by antoniaih 5 months ago
#2958 - Raise if symbol is an integer
Pull Request -
State: closed - Opened by antoniaih 5 months ago
#2957 - Add modelfit_results to results object
Pull Request -
State: closed - Opened by antoniaih 5 months ago
#2956 - Restructure derivative handling
Pull Request -
State: closed - Opened by JohanWBorg 5 months ago
#2955 - Bump black from 24.4.1 to 24.4.2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2954 - Remove common create_results function for tools
Issue -
State: open - Opened by stellabelin 5 months ago
#2953 - Implement SAMBA in covsearch
Issue -
State: open - Opened by rikardn 5 months ago
- 2 comments
Labels: enhancement
#2952 - Parse posterior eta means properly when reading NONMEM ModelfitResults
Issue -
State: open - Opened by rikardn 5 months ago
Labels: enhancement
#2951 - Parsing of mode/mean for posterior etas in NONMEM models
Issue -
State: open - Opened by rikardn 5 months ago
Labels: enhancement
#2950 - Update NONMEM model for mode or mean posterior etas
Issue -
State: open - Opened by rikardn 5 months ago
Labels: enhancement
#2949 - Add modelling function to transform a model into requiring mode or mean posterior etas
Issue -
State: open - Opened by rikardn 5 months ago
Labels: enhancement
#2948 - Add way of selecting between mode and mean for posterior etas
Issue -
State: open - Opened by rikardn 5 months ago
Labels: enhancement
#2947 - Add documentation for simulation tool
Pull Request -
State: closed - Opened by antoniaih 5 months ago
#2946 - Bump referencing from 0.34.0 to 0.35.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2945 - Bump black from 24.4.0 to 24.4.1
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2944 - Bump pyright from 1.1.359 to 1.1.360
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2943 - Refactor canonicalize statements
Pull Request -
State: closed - Opened by antoniaih 5 months ago
#2942 - Allow multiple arguments when defining derivative in Expr
Pull Request -
State: closed - Opened by JohanWBorg 5 months ago
- 1 comment
#2941 - Convert residuals to DataFrame in outlier_count
Pull Request -
State: closed - Opened by JohanWBorg 5 months ago
#2940 - Bump docutils from 0.21.1 to 0.21.2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2939 - Bump platformdirs from 4.2.0 to 4.2.1
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2938 - Bump tinycss2 from 1.2.1 to 1.3.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2937 - Bump virtualenv from 20.25.3 to 20.26.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2936 - Adaptive scope reduction and max eval option for covsearch
Pull Request -
State: closed - Opened by JohanWBorg 5 months ago
- 2 comments
#2935 - Rework mBIC in tools
Issue -
State: open - Opened by stellabelin 5 months ago
- 1 comment
#2934 - Add test coverage for model.py
Pull Request -
State: closed - Opened by antoniaih 5 months ago
#2933 - Add section in documentation about how to proceed after getting started
Issue -
State: open - Opened by stellabelin 5 months ago
Labels: docs
#2932 - Substitute fixed parameter symbols when calculating new UCP parameters
Pull Request -
State: closed - Opened by JohanWBorg 5 months ago
#2931 - TMDD via run_amd not generating a final basic PK model
Issue -
State: open - Opened by Orwa-bit 5 months ago
- 1 comment
#2930 - TMDD via run
Issue -
State: closed - Opened by Orwa-bit 5 months ago
#2929 - PKPD iiv_search and ruv_search
Issue -
State: open - Opened by Orwa-bit 5 months ago
- 2 comments
#2928 - Bump traitlets from 5.14.2 to 5.14.3
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2927 - Bump distributed from 2024.4.1 to 2024.4.2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies
#2926 - Bump pluggy from 1.4.0 to 1.5.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2925 - Bump sphinx from 7.3.6 to 7.3.7
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2924 - Bump dask from 2024.4.1 to 2024.4.2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2923 - Bump pyzmq from 26.0.0 to 26.0.2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#2922 - It's hard to get started.
Issue -
State: open - Opened by leahww 5 months ago
- 4 comments
#2921 - Fix parsing of statements
Pull Request -
State: closed - Opened by antoniaih 5 months ago