Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / pharmpy/pharmpy issues and pull requests

#3120 - Bump dask from 2024.6.0 to 2024.6.1

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#3119 - Bump distributed from 2024.6.0 to 2024.6.1

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 2 comments
Labels: dependencies

#3118 - Bump pyright from 1.1.367 to 1.1.368

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#3117 - Bump psutil from 5.9.8 to 6.0.0

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#3116 - error for run_modelsearch

Issue - State: closed - Opened by rosemarychen99 3 months ago - 2 comments

#3115 - set_dataset() cannot use relative dataset path

Issue - State: closed - Opened by rosemarychen99 3 months ago - 5 comments
Labels: bug

#3114 - Bump urllib3 from 2.2.1 to 2.2.2

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3113 - run_amd bug

Issue - State: closed - Opened by rosemarychen99 4 months ago - 2 comments

#3112 - Clearer documentation of config-setup

Issue - State: open - Opened by stellabelin 4 months ago
Labels: docs

#3111 - Not possible to have iiv-on-ruv on two DVs at the same time

Issue - State: open - Opened by antoniaih 4 months ago
Labels: bug

#3110 - Bump dask from 2024.5.2 to 2024.6.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3109 - Bump distributed from 2024.5.2 to 2024.6.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#3108 - Bump flake8 from 7.0.0 to 7.1.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3107 - Bump pycodestyle from 2.11.1 to 2.12.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#3106 - Bump numpy from 1.26.4 to 2.0.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#3105 - Bump fastjsonschema from 2.19.1 to 2.20.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3104 - Check if nmfe is available as part of the input validation

Issue - State: open - Opened by rikardn 4 months ago - 1 comment
Labels: enhancement

#3103 - FileNotFoundError: No path to NONMEM configured in pharmpy.conf and nmfe not in PATH

Issue - State: open - Opened by Razan2512 4 months ago - 8 comments
Labels: bug

#3102 - Wrong error model when using power after IIV on RUV

Issue - State: open - Opened by antoniaih 4 months ago
Labels: bug

#3100 - Add PD MFLs to eq

Pull Request - State: closed - Opened by antoniaih 4 months ago

#3098 - Raise proper error for NONMEM license file issues

Issue - State: open - Opened by stellabelin 4 months ago - 1 comment

#3097 - Bump filelock from 3.14.0 to 3.15.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3096 - Bump pyright from 1.1.366 to 1.1.367

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3095 - Example code produces error on Windows with conda

Issue - State: closed - Opened by falkenhagen 4 months ago - 6 comments

#3094 - How to allocate specified number of cpus while running in SLURM?

Issue - State: open - Opened by eraimundez 4 months ago - 3 comments
Labels: enhancement

#3093 - Bump more-itertools from 10.2.0 to 10.3.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3092 - Bump prompt-toolkit from 3.0.46 to 3.0.47

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3091 - Bump pkginfo from 1.11.0 to 1.11.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3090 - Bump packaging from 24.0 to 24.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3089 - Bump typing-extensions from 4.12.1 to 4.12.2

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3088 - Bump tornado from 6.4 to 6.4.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3087 - iivsearch: wrong output model

Issue - State: open - Opened by rosemarychen99 4 months ago - 1 comment

#3086 - Bump tox from 4.15.0 to 4.15.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3085 - Bump pyright from 1.1.365 to 1.1.366

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3084 - Bump pytest from 8.2.1 to 8.2.2

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3083 - Bump nodeenv from 1.9.0 to 1.9.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3082 - Bump prompt-toolkit from 3.0.45 to 3.0.46

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3081 - Bump zipp from 3.19.1 to 3.19.2

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3080 - Bump cryptography from 42.0.7 to 42.0.8

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3079 - Bump fsspec from 2024.5.0 to 2024.6.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3078 - error during run_amd

Issue - State: open - Opened by rosemarychen99 4 months ago - 1 comment

#3077 - Bump ipython from 8.24.0 to 8.25.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3076 - Bump pkginfo from 1.10.0 to 1.11.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3075 - Bump typing-extensions from 4.12.0 to 4.12.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3074 - Bump dask from 2024.5.1 to 2024.5.2

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3073 - Bump certifi from 2024.2.2 to 2024.6.2

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3072 - Bump zipp from 3.19.0 to 3.19.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3071 - Bump distributed from 2024.5.1 to 2024.5.2

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 2 comments
Labels: dependencies

#3069 - Indexing argument in modeling functions

Issue - State: open - Opened by JohanWBorg 4 months ago

#3068 - change index of appended estimation step function

Pull Request - State: closed - Opened by JohanWBorg 4 months ago

#3067 - Empty results as input to tools is broken

Issue - State: open - Opened by stellabelin 4 months ago
Labels: bug

#3066 - Bump requests from 2.32.2 to 2.32.3

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3065 - Bump sympy from 1.12 to 1.12.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3064 - Bump pyright from 1.1.364 to 1.1.365

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3063 - Add estimation option MCETA=1000 when linearizing model

Pull Request - State: closed - Opened by JohanWBorg 4 months ago

#3062 - Bump jupyterlab-widgets from 3.0.10 to 3.0.11

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#3061 - Bump prompt-toolkit from 3.0.44 to 3.0.45

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#3060 - Bump nodeenv from 1.8.0 to 1.9.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#3059 - Bump pydata-sphinx-theme from 0.15.2 to 0.15.3

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#3058 - Bump ipywidgets from 8.1.2 to 8.1.3

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 2 comments
Labels: dependencies

#3057 - Bump widgetsnbextension from 4.0.10 to 4.0.11

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#3056 - Add posterior_eta_type to EstimationStep

Pull Request - State: open - Opened by JohanWBorg 4 months ago

#3055 - Bump prompt-toolkit from 3.0.43 to 3.0.44

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3054 - Add function to rename symbols in model

Issue - State: open - Opened by stellabelin 4 months ago
Labels: enhancement

#3053 - Update mBIC implementation

Pull Request - State: closed - Opened by stellabelin 4 months ago

#3052 - Allow to add IOV without IIV

Pull Request - State: open - Opened by antoniaih 4 months ago

#3051 - Bump zipp from 3.18.2 to 3.19.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3050 - Bump scipy from 1.13.0 to 1.13.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3049 - Bump jupyter-client from 8.6.1 to 8.6.2

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3048 - Bump typing-extensions from 4.11.0 to 4.12.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3047 - Fix issue with create_report crashing for nlmixr models

Pull Request - State: open - Opened by JohanWBorg 4 months ago

#3046 - Bump pyright from 1.1.363 to 1.1.364

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3045 - Creation of a dummy eta when removing all IIV etas

Issue - State: closed - Opened by antoniaih 4 months ago - 3 comments
Labels: bug

#3044 - Store input/final model within each tool

Pull Request - State: closed - Opened by JohanWBorg 4 months ago

#3043 - Support linearization within IIVsearch

Pull Request - State: closed - Opened by JohanWBorg 4 months ago - 1 comment

#3042 - Bump requests from 2.32.1 to 2.32.2

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3040 - results.csv for pd.Series is bad

Issue - State: open - Opened by rikardn 4 months ago
Labels: bug

#3037 - Update nlmixr fitting

Pull Request - State: closed - Opened by JohanWBorg 4 months ago

#3036 - Bump requests from 2.31.0 to 2.32.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3035 - covsearch: wrong final model is output in the result file

Issue - State: closed - Opened by rosemarychen99 4 months ago - 1 comment

#3034 - Avoid get_model_features in backwards search

Pull Request - State: closed - Opened by JohanWBorg 4 months ago

#3033 - iivsearch json result summary tool missing information

Issue - State: closed - Opened by rosemarychen99 4 months ago - 4 comments

#3032 - Bump pytest from 8.2.0 to 8.2.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3031 - Bump distributed from 2024.5.0 to 2024.5.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#3030 - Bump dask from 2024.5.0 to 2024.5.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3029 - Bump pytest-asyncio from 0.23.6 to 0.23.7

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#3027 - Use new model database when running nlmixr

Pull Request - State: closed - Opened by JohanWBorg 5 months ago

#3026 - Bump twine from 5.0.0 to 5.1.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#3025 - Bump zipp from 3.18.1 to 3.18.2

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#3024 - Restructure linearize tool

Pull Request - State: closed - Opened by JohanWBorg 5 months ago - 1 comment

#3023 - Bump fsspec from 2024.3.1 to 2024.5.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#3022 - Bump pyright from 1.1.362 to 1.1.363

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#3021 - Bump platformdirs from 4.2.1 to 4.2.2

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies