Ecosyste.ms: Issues

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GitHub / pharmpy/pharmpy issues and pull requests

#1316 - Node Compartment(CENTRAL, dose=Bolus(AMT)) is not in the graph

Issue - State: open - Opened by joaoabr about 2 years ago - 3 comments

#1313 - Update AMD GUI

Issue - State: closed - Opened by stellabelin about 2 years ago - 2 comments

#1308 - Fixes #1293, #1302, and #1303

Pull Request - State: closed - Opened by stellabelin about 2 years ago - 1 comment

#1279 - Add kwargs to tool wrappers

Pull Request - State: closed - Opened by stellabelin about 2 years ago

#1274 - Clean up pheno example model

Issue - State: closed - Opened by stellabelin about 2 years ago - 1 comment

#1247 - Remove some places where database attribute on model is still set

Pull Request - State: closed - Opened by stellabelin about 2 years ago - 1 comment

#1242 - Update tool summaries, names, and descriptions in AMD

Pull Request - State: closed - Opened by stellabelin about 2 years ago

#1233 - Handle when final OFV is from very early iteration

Issue - State: open - Opened by stellabelin about 2 years ago - 1 comment

#1208 - Revise the Model class

Issue - State: closed - Opened by rikardn about 2 years ago - 1 comment

#1204 - results of run amd

Issue - State: open - Opened by joaoabr about 2 years ago - 3 comments

#1190 - default $TABLE

Issue - State: open - Opened by joaoabr about 2 years ago

#1185 - Add function get_rvs_with_same_dist

Pull Request - State: closed - Opened by stellabelin about 2 years ago - 1 comment

#1181 - Make get_rv_parameters more general

Pull Request - State: closed - Opened by stellabelin about 2 years ago - 1 comment

#1178 - Test with Covariate tool

Issue - State: open - Opened by SimonBuatois about 2 years ago - 9 comments

#1170 - Fix nonmem install error integration tests

Pull Request - State: closed - Opened by stellabelin about 2 years ago - 1 comment

#1167 - Better handling of input and final model in tools

Pull Request - State: closed - Opened by stellabelin about 2 years ago - 9 comments

#1163 - Error message during run_modelsearch

Issue - State: open - Opened by schaedeli over 2 years ago - 10 comments

#1139 - Length of values (288) does not match length of index (296)

Issue - State: open - Opened by joaoabr about 2 years ago - 27 comments
Labels: bug

#1116 - Rewrite of rank_models

Pull Request - State: closed - Opened by stellabelin about 2 years ago - 2 comments

#1113 - Cannot upgrade tornado and jupyter-client

Issue - State: closed - Opened by rikardn about 2 years ago - 10 comments
Labels: bug, dependencies

#1100 - Revise the Rate fix

Issue - State: closed - Opened by ZheHuang96 about 2 years ago - 1 comment

#996 - retries with shuffled initial estimates

Issue - State: open - Opened by joaoabr over 2 years ago
Labels: enhancement

#995 - add_covariance_step with additional options

Issue - State: open - Opened by joaoabr over 2 years ago - 1 comment
Labels: enhancement, wontfix, stalled

#968 - Fix issue with fortran compiler on GHA

Issue - State: closed - Opened by stellabelin over 2 years ago - 2 comments
Labels: dx

#964 - Add level in log for critical errors

Issue - State: closed - Opened by stellabelin over 2 years ago - 3 comments

#950 - Specify which row have invalid date

Issue - State: closed - Opened by stellabelin over 2 years ago - 1 comment

#851 - Design log object on tool level

Issue - State: closed - Opened by stellabelin over 2 years ago - 1 comment
Labels: enhancement

#784 - Rename tool input/base models for tools

Issue - State: closed - Opened by rikardn over 2 years ago - 1 comment
Labels: enhancement

#783 - Add modeling.read_tool_models

Issue - State: closed - Opened by rikardn over 2 years ago - 1 comment
Labels: enhancement

#743 - Make `Model` serializable/deserializable

Issue - State: closed - Opened by pharmpy-dev-123 over 2 years ago - 1 comment
Labels: dx

#741 - Improve UX when NONMEM license missing or expired

Issue - State: open - Opened by pharmpy-dev-123 over 2 years ago
Labels: ux

#732 - estmethod crashes

Issue - State: open - Opened by rikardn over 2 years ago - 1 comment
Labels: bug, stalled

#725 - calculate_bic error: "Could not find CL in Parameters"

Issue - State: closed - Opened by rosemarychen99 over 2 years ago - 1 comment

#715 - Make pyreadr into optional dependency

Issue - State: closed - Opened by rikardn over 2 years ago - 1 comment
Labels: bug

#702 - Contribution

Issue - State: closed - Opened by Mutaz94 over 2 years ago - 6 comments

#677 - Feature tool metadata

Pull Request - State: closed - Opened by stellabelin over 2 years ago - 1 comment

#631 - Errors from higher levels of the system should potentially not give a full stack trace

Issue - State: closed - Opened by rikardn over 2 years ago - 1 comment
Labels: enhancement

#612 - Sort result summaries by name/number

Issue - State: closed - Opened by stellabelin over 2 years ago - 1 comment

#611 - Change to BIC instead of dBIC

Issue - State: closed - Opened by stellabelin over 2 years ago - 1 comment

#604 - Option to force path for tool paths

Issue - State: closed - Opened by stellabelin over 2 years ago - 1 comment

#597 - No pyreader wheel for M1 Mac (via pypi)

Issue - State: closed - Opened by rikardn over 2 years ago - 1 comment
Labels: dependencies

#587 - Add covariance option in estmethod tool

Issue - State: closed - Opened by stellabelin over 2 years ago - 2 comments
Labels: enhancement

#553 - transit compartments not removed with first_order_absorption()

Issue - State: open - Opened by emiliesg over 3 years ago - 2 comments

#552 - Output after fit()

Issue - State: closed - Opened by joaoabr over 3 years ago - 4 comments

#548 - add_individual_parameter

Issue - State: open - Opened by SimonBuatois about 3 years ago - 1 comment
Labels: stalled

#547 - plot_individual_predictions

Issue - State: open - Opened by joaoabr almost 3 years ago

#546 - plot_individual_predictions

Issue - State: closed - Opened by joaoabr almost 3 years ago - 1 comment

#544 - Support non-derivative statements in $DES

Issue - State: closed - Opened by rikardn almost 3 years ago - 4 comments
Labels: enhancement

#455 - modelfit_results$parameter_estimates

Issue - State: closed - Opened by SCarter79 almost 3 years ago - 3 comments

#434 - read_results

Issue - State: open - Opened by joaoabr almost 3 years ago - 1 comment

#432 - sample_parameters_uniformly

Issue - State: open - Opened by joaoabr almost 3 years ago

#431 - function names

Issue - State: open - Opened by joaoabr almost 3 years ago - 1 comment

#422 - Clearer error messages when running tools

Issue - State: closed - Opened by stellabelin almost 3 years ago - 1 comment

#413 - Clarify path in documentation for write_model

Issue - State: open - Opened by joaoabr almost 3 years ago

#405 - set_dtbs_error_model

Issue - State: open - Opened by SimonBuatois about 3 years ago - 4 comments

#404 - remove_iov

Issue - State: open - Opened by SimonBuatois about 3 years ago - 1 comment
Labels: waiting for information, stalled

#403 - add_iov

Issue - State: open - Opened by SimonBuatois about 3 years ago - 1 comment
Labels: bug, waiting for information, stalled

#401 - remove_lag_time

Issue - State: open - Opened by SimonBuatois about 3 years ago
Labels: bug

#386 - Sporadic timeout of connection on cluster

Issue - State: closed - Opened by stellabelin about 3 years ago - 4 comments

#383 - Allow manual initial value for MAT in set_first_order_absorption

Issue - State: open - Opened by SimonBuatois about 3 years ago - 1 comment
Labels: enhancement

#380 - Documentation R package

Issue - State: open - Opened by SimonBuatois about 3 years ago - 1 comment

#370 - Change CMT column when changing the compartmental structure

Issue - State: closed - Opened by stellabelin about 3 years ago - 1 comment

#351 - Error creating a joint distribution in warfarin model

Issue - State: closed - Opened by stellabelin about 3 years ago - 1 comment
Labels: bug

#339 - Add model-diff functions

Issue - State: closed - Opened by stellabelin about 3 years ago - 1 comment
Labels: duplicate, enhancement

#333 - Example provided in the help for the fit function cannot be run

Issue - State: open - Opened by SylvieRetout about 3 years ago - 1 comment
Labels: bug

#297 - Simplify installation of tflite

Issue - State: open - Opened by rikardn about 3 years ago - 7 comments
Labels: dependencies

#287 - Error when adding a peripheral compartment with NL elimination

Issue - State: open - Opened by SimonBuatois about 3 years ago - 1 comment

#271 - Columns that are dropped in $INPUT are not removed from model$dataset

Issue - State: closed - Opened by SimonBuatois over 3 years ago - 1 comment

#233 - A(2) not converted into A_CENTRAL

Issue - State: closed - Opened by rikardn over 3 years ago - 1 comment
Labels: bug

#227 - Json file (boostrap) Warning message

Issue - State: open - Opened by SylvieRetout over 3 years ago

#214 - Clarify R usage in User Guide

Issue - State: closed - Opened by stellabelin over 3 years ago - 1 comment
Labels: docs

#184 - FREM plots not produced

Issue - State: open - Opened by joaoabr over 3 years ago - 1 comment
Labels: ux

#146 - Review Pharmpy/pharmr branding

Issue - State: closed - Opened by stellabelin over 3 years ago - 2 comments

#134 - Check Github Actions on: workflow_run

Issue - State: closed - Opened by stellabelin over 3 years ago
Labels: dx

#133 - Cannot run test_cli.py stand alone

Issue - State: closed - Opened by rikardn over 3 years ago
Labels: dx

#85 - Error when changing back and forth the absorption model

Issue - State: open - Opened by SimonBuatois almost 4 years ago - 3 comments
Labels: bug

#69 - Support NONMEM 7.5 symbolic THETAs

Issue - State: open - Opened by rikardn almost 4 years ago - 5 comments

#63 - Crash when updating statements after adding an eta

Issue - State: closed - Opened by stellabelin almost 4 years ago - 3 comments
Labels: bug

#57 - Handling of models with piecewise error functions

Issue - State: closed - Opened by stellabelin almost 4 years ago - 4 comments

#53 - reading in psn_qa_results error

Issue - State: open - Opened by SCarter79 almost 4 years ago
Labels: bug

#45 - Support MU-referencing for NONMEM models

Issue - State: closed - Opened by rikardn almost 4 years ago - 1 comment
Labels: enhancement

#36 - Support assignments in $DES

Issue - State: closed - Opened by rikardn about 4 years ago - 1 comment

#30 - Use symengine to speedup statements

Issue - State: closed - Opened by rikardn about 4 years ago - 3 comments
Labels: enhancement, perf