pharmpy/pharmpy issues and pull requests

#1724 - Bump docutils from 0.19.0 to 0.20

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#1723 - Bump altair from 4.2.2 to 5.0.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1722 - Model code changed using fit

Issue - State: closed - Opened by kevin199011 over 1 year ago - 2 comments

#1721 - Bump ipykernel from 6.22.0 to 6.23.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1720 - Bump nbconvert from 7.3.1 to 7.4.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1719 - Bump tflite-runtime from 2.5.0.post1 to 2.12.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#1718 - Support for ALAG in nlmixr/rxode

Pull Request - State: closed - Opened by JohanWBorg over 1 year ago

#1717 - Bump fsspec from 2023.4.0 to 2023.5.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1716 - Bump certifi from 2022.12.7 to 2023.5.7

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1715 - Conversion tool update

Pull Request - State: closed - Opened by JohanWBorg over 1 year ago - 1 comment

#1714 - Allow specification of admids

Issue - State: open - Opened by rikardn over 1 year ago
Labels: enhancement

#1713 - Autogenerate CMT column when needed for NONMEM

Issue - State: closed - Opened by rikardn over 1 year ago - 2 comments
Labels: enhancement

#1712 - Create IV+Oral start model

Issue - State: closed - Opened by rikardn over 1 year ago - 1 comment
Labels: enhancement

#1711 - Bump ipython from 8.13.1 to 8.13.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1710 - Bump requests from 2.29.0 to 2.30.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1709 - Develop structsearch for metabolite models

Issue - State: closed - Opened by rikardn over 1 year ago - 1 comment
Labels: enhancement

#1708 - Rescaled logit for iiv etas

Issue - State: closed - Opened by rikardn over 1 year ago - 1 comment

#1707 - Update add_metabolite function

Issue - State: closed - Opened by rikardn over 1 year ago - 1 comment
Labels: enhancement

#1706 - Bump urllib3 from 1.26.15 to 2.0.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#1705 - Bioavailability fixes and updates to conversion tool

Pull Request - State: closed - Opened by JohanWBorg over 1 year ago - 1 comment

#1704 - Bump ipython from 8.12.0 to 8.13.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1703 - Bump distributed from 2023.4.0 to 2023.4.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#1702 - Bump sphinx from 6.2.1 to 7.0.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1701 - Bump dask from 2023.4.0 to 2023.4.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#1700 - Bump urllib3 from 1.26.15 to 2.0.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#1699 - Standard deviation for model is set to 0

Issue - State: open - Opened by stellabelin over 1 year ago - 3 comments
Labels: bug

#1698 - Bump platformdirs from 3.4.0 to 3.5.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1697 - Bump rich from 13.3.4 to 13.3.5

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1696 - urllib3 2.0.0 cannot be used together with requests

Issue - State: closed - Opened by rikardn over 1 year ago
Labels: dependencies

#1695 - Bump platformdirs from 3.3.0 to 3.4.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1694 - Bump requests from 2.28.2 to 2.29.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1693 - Bump urllib3 from 1.26.15 to 2.0.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#1692 - residual power model should perhaps have IPRED only once

Issue - State: open - Opened by rikardn over 1 year ago

#1691 - print_model_diff is confusing

Issue - State: open - Opened by rikardn over 1 year ago

#1690 - Running iivsearch with files on network drive fails NONMEM runs

Issue - State: open - Opened by rikardn over 1 year ago

#1689 - Number of warnings in model table does not match summary_errors

Issue - State: open - Opened by rikardn over 1 year ago
Labels: bug

#1688 - ruvsearch stops if best proxy-model fails on nlme-side

Issue - State: open - Opened by rikardn over 1 year ago

#1687 - Bump platformdirs from 3.2.0 to 3.3.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1686 - Bump nbclient from 0.7.3 to 0.7.4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1685 - Bump sphinx from 6.1.3 to 6.2.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1684 - Bump pandas from 1.5.3 to 2.0.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#1683 - Having $TABLE property

Issue - State: open - Opened by OmarAshkar over 1 year ago - 3 comments
Labels: enhancement

#1682 - Correction of ODE parsing and $DES assignment statements

Pull Request - State: closed - Opened by JohanWBorg over 1 year ago - 2 comments

#1681 - Bump sphinx from 6.1.3 to 6.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#1680 - Bump numpy from 1.24.2 to 1.24.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1679 - Bump tornado from 6.3 to 6.3.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1678 - Bump importlib-metadata from 6.5.0 to 6.6.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1677 - Wait for workflow action not working

Issue - State: open - Opened by stellabelin over 1 year ago
Labels: dx

#1676 - Handle mixed case symbols in NONMEM models

Issue - State: open - Opened by rikardn over 1 year ago

#1675 - Bump importlib-metadata from 6.4.1 to 6.5.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1674 - Bump pygments from 2.15.0 to 2.15.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1673 - Bump tornado from 6.1 to 6.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1672 - RxODE converter

Pull Request - State: closed - Opened by JohanWBorg over 1 year ago - 2 comments

#1671 - Describe `results` option in AMD tool input documentation

Issue - State: open - Opened by stellabelin over 1 year ago
Labels: docs

#1670 - Bump psutil from 5.9.4 to 5.9.5

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1669 - Bump zict from 2.2.0 to 3.0.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1668 - Bump soupsieve from 2.4 to 2.4.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1667 - Bump importlib-metadata from 6.3.0 to 6.4.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1666 - Bump attrs from 22.2.0 to 23.1.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1665 - Bump dask from 2023.3.2 to 2023.4.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#1664 - Bump distributed from 2023.3.2.1 to 2023.4.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#1663 - RxODE conversion

Pull Request - State: closed - Opened by JohanWBorg over 1 year ago - 1 comment

#1662 - Update to nlmixr conversion tool

Pull Request - State: closed - Opened by JohanWBorg over 1 year ago - 1 comment

#1661 - Bump jupyter-client from 7.3.4 to 8.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#1660 - Bump packaging from 23.0 to 23.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1659 - Bump rich from 13.3.3 to 13.3.4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1658 - Bump partd from 1.3.0 to 1.4.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1657 - Problems reading in old results.json using pandas 2.0.0

Issue - State: closed - Opened by rikardn over 1 year ago - 1 comment
Labels: dependencies

#1656 - Bump importlib-metadata from 6.1.0 to 6.3.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1655 - Bump nbconvert from 7.3.0 to 7.3.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1654 - Bump pygments from 2.14.0 to 2.15.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1652 - Bump fsspec from 2023.3.0 to 2023.4.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1644 - Bump pandas from 1.5.3 to 2.0.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#1642 - Support Python 3.12

Issue - State: open - Opened by rikardn over 1 year ago
Labels: dependencies

#1639 - Proper handling of initial conditions for ODEs

Issue - State: closed - Opened by rikardn over 1 year ago - 1 comment
Labels: enhancement

#1622 - Bump jupyterlab-widgets from 3.0.5 to 3.0.6

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago

#1614 - Implement model creator GUI

Issue - State: closed - Opened by rikardn over 1 year ago - 1 comment
Labels: enhancement

#1613 - Support generating RxODE models

Issue - State: closed - Opened by rikardn over 1 year ago - 1 comment
Labels: enhancement

#1612 - Create report for amd tool

Issue - State: open - Opened by rikardn over 1 year ago - 5 comments
Labels: enhancement

#1611 - Scope for rerunning?

Issue - State: closed - Opened by rikardn over 1 year ago
Labels: enhancement

#1610 - Make it possible to rerun ruvsearch

Issue - State: closed - Opened by rikardn over 1 year ago
Labels: enhancement

#1609 - Make it possible to rerun iivsearch

Issue - State: closed - Opened by rikardn over 1 year ago - 1 comment
Labels: enhancement

#1608 - Add support for TMDD models to amd

Issue - State: closed - Opened by rikardn over 1 year ago - 1 comment
Labels: enhancement

#1605 - update_source for ZO inputs

Issue - State: closed - Opened by rikardn over 1 year ago - 1 comment
Labels: enhancement

#1603 - Handle inputs in CompartmentalSystem

Issue - State: closed - Opened by rikardn over 1 year ago
Labels: enhancement

#1602 - Support bioavailability in covsearch

Issue - State: closed - Opened by rikardn over 1 year ago - 2 comments
Labels: enhancement

#1601 - Add transformation function to add assignment for bioavailability

Issue - State: closed - Opened by rikardn over 1 year ago - 2 comments
Labels: enhancement

#1600 - Parsing of NONMEM models with multiple dosing

Issue - State: closed - Opened by rikardn over 1 year ago - 2 comments
Labels: enhancement

#1599 - Add support for PKPD models to amd

Issue - State: closed - Opened by rikardn over 1 year ago
Labels: enhancement

#1598 - Add support for PKPD models to modelsearch

Issue - State: closed - Opened by rikardn over 1 year ago - 1 comment
Labels: enhancement

#1597 - Scope for PKPD models

Issue - State: closed - Opened by rikardn over 1 year ago
Labels: enhancement

#1596 - Support multiple dosing in amd-tool

Issue - State: closed - Opened by rikardn over 1 year ago - 2 comments
Labels: enhancement

#1595 - Support models with multiple dosing by current transformations

Issue - State: closed - Opened by rikardn over 1 year ago - 3 comments
Labels: enhancement

#1594 - Support multiple doses per Compartment

Issue - State: closed - Opened by rikardn over 1 year ago - 2 comments
Labels: enhancement

#1593 - Support drug-metabolite models in amd

Issue - State: closed - Opened by rikardn over 1 year ago - 1 comment
Labels: enhancement

#1592 - Support multiple dv models in ruvsearch

Issue - State: closed - Opened by rikardn over 1 year ago - 2 comments
Labels: enhancement

#1591 - New MFL for drug-metabolite models

Issue - State: closed - Opened by rikardn over 1 year ago - 1 comment
Labels: enhancement

#1590 - Support iivsearch for new parameters in drug-metabolite models

Issue - State: closed - Opened by rikardn over 1 year ago
Labels: enhancement

#1589 - Support residual error models for multiple dvs

Issue - State: closed - Opened by rikardn over 1 year ago - 1 comment
Labels: enhancement

#1588 - Support multiple distributions for drug-metabolite model

Issue - State: closed - Opened by rikardn over 1 year ago - 1 comment
Labels: enhancement

GitHub / pharmpy/pharmpy issues and pull requests