Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / pharmpy/pharmpy issues and pull requests

#2039 - Bump rpds-py from 0.10.2 to 0.10.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2038 - Bump widgetsnbextension from 4.0.8 to 4.0.9

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2037 - Bump jupyterlab-widgets from 3.0.8 to 3.0.9

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2036 - Bump sphinx from 7.2.5 to 7.2.6

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2035 - Bump ipywidgets from 8.1.0 to 8.1.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#2034 - Proportional effect

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#2033 - Automatically reset model to proportional if needed in RUVsearch

Pull Request - State: closed - Opened by JohanWBorg about 1 year ago - 2 comments

#2032 - ModelFeatures class and rework of modelsearch for rerunning

Pull Request - State: closed - Opened by JohanWBorg about 1 year ago - 2 comments

#2031 - Add iiv proportional

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#2030 - Bump numexpr from 2.8.5 to 2.8.6

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2029 - Bump debugpy from 1.7.0 to 1.8.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2028 - Support IIV and IOV in MFL

Issue - State: open - Opened by rikardn about 1 year ago
Labels: enhancement

#2027 - Fix bug in remove_iiv

Pull Request - State: closed - Opened by antoniaih about 1 year ago

#2026 - Remove modelfit_results from Model

Issue - State: closed - Opened by rikardn about 1 year ago
Labels: dx

#2025 - Move parent model information from model object to model database

Issue - State: closed - Opened by rikardn about 1 year ago - 1 comment
Labels: dx

#2024 - Bump debugpy from 1.6.7.post1 to 1.7.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2023 - Bug in remove_iiv

Issue - State: closed - Opened by antoniaih about 1 year ago - 2 comments
Labels: bug

#2022 - load_dataset uses tmp path

Issue - State: open - Opened by antoniaih about 1 year ago
Labels: bug

#2021 - Adapt iivsearch fullblock for pd models

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#2020 - Add explanatory comments to update_estimation function

Pull Request - State: closed - Opened by vrognas about 1 year ago - 1 comment

#2019 - Bump dask from 2023.7.0 to 2023.9.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#2018 - Bump distributed from 2023.7.0 to 2023.9.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 3 comments
Labels: dependencies

#2017 - Add indirect effect models

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#2016 - Bump pytz from 2023.3 to 2023.3.post1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2015 - Bump asttokens from 2.2.1 to 2.4.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2014 - Bump ipykernel from 6.25.1 to 6.25.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2013 - Bump rpds-py from 0.10.0 to 0.10.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2012 - Bump ipython from 8.14.0 to 8.15.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2011 - Bump asttokens from 2.2.1 to 2.3.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#2010 - Bump dask from 2023.7.0 to 2023.9.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies

#2009 - Bump soupsieve from 2.4.1 to 2.5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2008 - Bump fsspec from 2023.6.0 to 2023.9.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2007 - Revamp README: Enhance Overview, Add Sections, and Improve Formatting

Pull Request - State: closed - Opened by vrognas about 1 year ago - 2 comments

#2006 - Refactor naming in EstimationStep class

Pull Request - State: closed - Opened by vrognas about 1 year ago - 2 comments

#2005 - load_example_modelfit_results crash

Issue - State: closed - Opened by rikardn about 1 year ago - 1 comment
Labels: bug

#2004 - Support `$DESIGN` as an uncertainty method

Issue - State: closed - Opened by vrognas about 1 year ago - 1 comment
Labels: enhancement

#2003 - Add cov argument to _create_description in algorithms (fixes #1898)

Pull Request - State: closed - Opened by vrognas about 1 year ago - 2 comments

#2002 - Bump altair from 4.2.2 to 5.1.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#2001 - Bump pandas from 2.0.3 to 2.1.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies

#2000 - Bump sphinx from 7.2.4 to 7.2.5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1999 - Start model for iv+oral models

Pull Request - State: closed - Opened by JohanWBorg about 1 year ago - 2 comments

#1998 - set_transit_compartments(model, 0) causes crash in some cases.

Issue - State: open - Opened by davsjob about 1 year ago
Labels: bug

#1997 - Bump nbconvert from 7.7.4 to 7.8.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1996 - Bump jupyter-client from 8.3.0 to 8.3.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1995 - Modify AMD for PKPD models

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 2 comments

#1994 - Setting MM elimination with no dataset connected crashes

Issue - State: closed - Opened by rikardn about 1 year ago
Labels: bug

#1993 - Bump rpds-py from 0.9.2 to 0.10.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1992 - Bump altair from 4.2.2 to 5.1.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#1991 - Exclude PK start model from Structsearch results

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#1990 - Bump sphinx from 7.2.3 to 7.2.4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#1989 - Ignore PD data when performing a fit on the input model

Issue - State: open - Opened by antoniaih about 1 year ago
Labels: enhancement

#1988 - A warning from GHA integration tests

Issue - State: open - Opened by rikardn about 1 year ago
Labels: dx

#1987 - Change Slope to SLOPE in mfl tests for covsearch

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#1986 - Modify nonmem parsing for multiple DVs

Pull Request - State: closed - Opened by antoniaih about 1 year ago

#1985 - Bump sphinx from 7.2.2 to 7.2.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1984 - Correct nlmixr execute_model() to follow same format as respective NONMEM function

Pull Request - State: closed - Opened by JohanWBorg about 1 year ago - 1 comment

#1983 - Add initial ests for emax and ec50 as user input

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#1982 - Change Slope to SLOPE and E_max to E_MAX

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 2 comments

#1981 - Remove `LALR(1)` project from `projects.rst`

Pull Request - State: closed - Opened by king-of-poppk about 1 year ago - 2 comments

#1980 - Fix bug in get_pk_parameters

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#1979 - Add @PK and @PD to mfl

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#1978 - Change S to slope

Pull Request - State: closed - Opened by antoniaih about 1 year ago

#1977 - Bump sphinxcontrib-serializinghtml from 1.1.8 to 1.1.9

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1976 - Bump dask from 2023.7.0 to 2023.8.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies

#1975 - Bump sphinx-automodapi from 0.15.0 to 0.16.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1974 - Bump scipy from 1.11.1 to 1.11.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1973 - Bump click from 8.1.6 to 8.1.7

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1972 - Bump sphinx from 7.1.2 to 7.2.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1971 - Handle multiple DVs in nonmem models

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#1970 - Ignore negative times in initial estimate

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#1969 - Bump nbconvert from 7.7.3 to 7.7.4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1968 - Run nightly integration tests

Issue - State: closed - Opened by rikardn about 1 year ago - 1 comment
Labels: dx

#1967 - structsearch integration tests fail on Mac and Windows

Issue - State: open - Opened by rikardn about 1 year ago
Labels: bug, dx

#1966 - Update help_functions.py

Pull Request - State: closed - Opened by davsjob about 1 year ago - 2 comments

#1965 - oral create_basic_pk_model crashes for negative times in dataset

Issue - State: closed - Opened by antoniaih about 1 year ago
Labels: bug

#1964 - Change datainfo in Model.create()

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#1963 - Problem when reading a PKPD model

Issue - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#1962 - Bump sphinxcontrib-htmlhelp from 2.0.3 to 2.0.4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1961 - Bump sphinxcontrib-serializinghtml from 1.1.7 to 1.1.8

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1960 - Bump sphinxcontrib-applehelp from 1.0.6 to 1.0.7

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1959 - Bump sphinxcontrib-devhelp from 1.0.4 to 1.0.5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1958 - Bump sphinxcontrib-qthelp from 1.0.5 to 1.0.6

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1957 - Add dv option to RUVSearch

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#1956 - PK start model is always ranked 1 in structsearch

Issue - State: closed - Opened by antoniaih about 1 year ago - 2 comments

#1955 - Error in create_basic_pk_model when adding a PD model

Issue - State: closed - Opened by antoniaih about 1 year ago - 1 comment
Labels: bug

#1954 - Ignore fixed parameters in IOVSearch

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 2 comments

#1953 - Unfix E_0 in structsearch

Pull Request - State: closed - Opened by antoniaih about 1 year ago

#1952 - Bump tornado from 6.3.2 to 6.3.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1951 - Improve RUVSearch to handle multuple DVIDs

Issue - State: closed - Opened by antoniaih about 1 year ago - 1 comment
Labels: enhancement

#1950 - Add Placebo effects

Issue - State: open - Opened by antoniaih about 1 year ago
Labels: enhancement

#1949 - Add proportional PD models

Issue - State: closed - Opened by antoniaih about 1 year ago - 1 comment
Labels: enhancement

#1948 - run_amd tool: modelsearch ranking does not work

Issue - State: closed - Opened by schaedeli about 1 year ago - 2 comments

#1946 - support BLQ column in transform_blq and run_amd

Issue - State: closed - Opened by emiliesg about 1 year ago - 2 comments

#1945 - Bump pyzmq from 25.1.0 to 25.1.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1944 - Drug metabolite model support + structsearch

Pull Request - State: closed - Opened by JohanWBorg about 1 year ago - 3 comments

#1942 - Bump sphinxcontrib-htmlhelp from 2.0.2 to 2.0.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1941 - Bump sphinxcontrib-devhelp from 1.0.3 to 1.0.4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1940 - Bump sphinxcontrib-applehelp from 1.0.5 to 1.0.6

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies