Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / pharmpy/pharmpy issues and pull requests

#2385 - Bump pydata-sphinx-theme from 0.14.3 to 0.14.4

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2384 - Bump cryptography from 41.0.5 to 41.0.7

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2383 - Change old import paths in RxODE verification

Pull Request - State: closed - Opened by JohanWBorg 12 months ago - 1 comment

#2382 - Bump idna from 3.4 to 3.6

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2381 - Bump ipython from 8.17.2 to 8.18.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2380 - Bump pexpect from 4.8.0 to 4.9.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2379 - Pre-defined strategies for order in AMD

Pull Request - State: closed - Opened by JohanWBorg 12 months ago - 3 comments

#2378 - Detailed documentation for tmdd models

Pull Request - State: closed - Opened by antoniaih 12 months ago - 3 comments

#2377 - Bump jupyterlab-pygments from 0.2.2 to 0.3.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2376 - More detailed documentation for TMDD models

Issue - State: closed - Opened by antoniaih 12 months ago - 1 comment
Labels: docs

#2375 - update strictness documentation

Pull Request - State: closed - Opened by antoniaih 12 months ago - 1 comment

#2374 - TMDD for multiple DVs

Pull Request - State: closed - Opened by antoniaih 12 months ago - 2 comments

#2372 - Add type check to __eq__ for mfl attributes

Pull Request - State: closed - Opened by JohanWBorg 12 months ago - 1 comment

#2371 - Bump pyright from 1.1.336 to 1.1.337

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2370 - Correct modelsearch bad_statements filtration

Pull Request - State: closed - Opened by JohanWBorg 12 months ago

#2369 - Rework covsearch for structural/mechanistic and exploratory covariates

Pull Request - State: closed - Opened by JohanWBorg 12 months ago - 2 comments

#2368 - Add references to the various BICs

Issue - State: open - Opened by rikardn 12 months ago
Labels: docs

#2367 - Bump exceptiongroup from 1.1.3 to 1.2.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2366 - Bump virtualenv from 20.24.6 to 20.24.7

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2365 - Bump ipykernel from 6.26.0 to 6.27.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2364 - Bump pygments from 2.17.1 to 2.17.2

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2363 - Bump pytest-xdist from 2.5.0 to 3.5.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 3 comments
Labels: dependencies

#2362 - Bump wcwidth from 0.2.10 to 0.2.12

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2361 - Add model to is_strictness_fulfilled in covsearch

Pull Request - State: closed - Opened by antoniaih 12 months ago - 1 comment

#2356 - Add strictness for different parameter types

Pull Request - State: closed - Opened by antoniaih 12 months ago - 1 comment

#2339 - Implement ModelEntry in structsearch

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#2329 - Remove support for Python 3.9

Issue - State: closed - Opened by rikardn about 1 year ago - 1 comment
Labels: dependencies

#2328 - Fix initial estimates tmdd

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#2323 - Raise error when all models fail strictness

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 5 comments

#2321 - Fix modelsearch in structsearch for TMMD in AMD

Pull Request - State: closed - Opened by antoniaih about 1 year ago

#2320 - Fix volume parameter in TMDD models

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 2 comments

#2319 - Update strictness documentation

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#2318 - platformdirs can not be bumped until a new virtualenv is out

Issue - State: closed - Opened by rikardn about 1 year ago
Labels: dependencies

#2307 - Correct windows path for fix_eta file and updates to RxODE

Pull Request - State: open - Opened by JohanWBorg about 1 year ago - 1 comment

#2306 - Input MFL objects to subfunctions in AMD

Issue - State: closed - Opened by stellabelin about 1 year ago - 1 comment

#2305 - Only allow MFLs as search space for COVSearch

Issue - State: closed - Opened by stellabelin about 1 year ago - 1 comment

#2304 - 'SimulationStep' object has no attribute 'evaluation' error

Issue - State: open - Opened by OmarAshkar about 1 year ago - 1 comment

#2303 - File path for windows in nlmixr/rxode

Pull Request - State: closed - Opened by JohanWBorg about 1 year ago - 2 comments

#2302 - Update documentation for filter_dataset

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 2 comments

#2301 - Add default order for AMD for pkpd + fix bug

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#2300 - Bump black from 23.10.1 to 23.11.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2299 - New requirements.txt for pip and tox (and deps)

Pull Request - State: closed - Opened by rikardn about 1 year ago

#2298 - Add warnings when all models fail the strictness criteria

Issue - State: closed - Opened by antoniaih about 1 year ago

#2297 - Split strictness criteria based on parameter type

Issue - State: closed - Opened by antoniaih about 1 year ago - 1 comment
Labels: enhancement

#2296 - Fixed to MMAPP models

Pull Request - State: closed - Opened by antoniaih about 1 year ago

#2295 - Update is strictness fulfilled

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#2294 - Default allometric variable based on "body weight" instead of using "WT"

Pull Request - State: closed - Opened by JohanWBorg about 1 year ago - 2 comments

#2293 - Avoid removing allometry scaling in covsearch

Pull Request - State: closed - Opened by JohanWBorg about 1 year ago - 4 comments

#2292 - Revert "Bump pytest-xdist from 2.5.0 to 3.3.1"

Pull Request - State: closed - Opened by rikardn about 1 year ago

#2291 - Bump nbclient from 0.8.0 to 0.9.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2288 - Remove default inits for parameters in AMD tool

Issue - State: closed - Opened by rikardn about 1 year ago

#2287 - Change initial estimates of KM and set upper bound

Issue - State: closed - Opened by rikardn about 1 year ago
Labels: bug

#2286 - Set multiple testing corrected BIC as default in all AMD tools

Issue - State: open - Opened by rikardn about 1 year ago
Labels: enhancement

#2284 - Fix crashing modelsearch due to wrongfully connected modelfit_results object

Pull Request - State: closed - Opened by JohanWBorg about 1 year ago - 1 comment

#2283 - Bump jupyter-client from 8.5.0 to 8.6.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2282 - Bump comm from 0.1.4 to 0.2.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2281 - Bump nbconvert from 7.10.0 to 7.11.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2280 - Revert "Avoid removing allometry scaling in AMD"

Pull Request - State: closed - Opened by stellabelin about 1 year ago - 1 comment

#2279 - Use Literal in typehints for enum-like strings

Issue - State: closed - Opened by rikardn about 1 year ago - 1 comment

#2278 - Bump rpds-py from 0.10.6 to 0.12.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2277 - Remove wrongful if statement

Pull Request - State: closed - Opened by JohanWBorg about 1 year ago - 1 comment

#2276 - Bump pytest-xdist from 2.5.0 to 3.3.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#2275 - Make fixes to TMDD models

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 2 comments

#2274 - Avoid removing allometry scaling in AMD

Pull Request - State: closed - Opened by JohanWBorg about 1 year ago

#2273 - Implement tool specific least number of transformations

Pull Request - State: closed - Opened by JohanWBorg about 1 year ago - 2 comments

#2272 - Add docstring for is_strictness_fulfilled

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#2271 - Model selection in TMDD structsearch

Issue - State: open - Opened by antoniaih about 1 year ago

#2270 - Change parsing to piping of models in AMD

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#2269 - AMD json encoding error when creating results

Issue - State: closed - Opened by JohanWBorg about 1 year ago - 4 comments
Labels: bug

#2268 - Add base_model to res_models

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 2 comments

#2267 - Allometric scaling removed in covsearch

Issue - State: closed - Opened by JohanWBorg about 1 year ago - 1 comment
Labels: bug

#2266 - Bump charset-normalizer from 3.3.1 to 3.3.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2265 - Bump pytest-xdist from 2.5.0 to 3.3.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2264 - Update TMDD models

Pull Request - State: closed - Opened by antoniaih about 1 year ago - 1 comment

#2263 - pytest-xdist >= 3.0.2 breaks doctests

Issue - State: closed - Opened by rikardn about 1 year ago - 2 comments
Labels: dependencies

#2262 - Bump pytest-xdist from 2.5.0 to 3.3.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2261 - Bump pytest from 7.4.2 to 7.4.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2260 - Bump ipython from 8.17.1 to 8.17.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2259 - Bump markdown from 3.5 to 3.5.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2258 - Add results equivalent of load_model_for_test

Issue - State: open - Opened by stellabelin about 1 year ago
Labels: dx

#2257 - Allow to add output directory/path to fit()

Issue - State: closed - Opened by marianklose about 1 year ago - 7 comments

#2256 - Bump nbconvert from 7.9.2 to 7.10.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2255 - Bump ipython from 8.16.1 to 8.17.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2254 - Bump jsonschema from 4.19.1 to 4.19.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2253 - Bump wcwidth from 0.2.8 to 0.2.9

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2252 - Bump pydata-sphinx-theme from 0.14.2 to 0.14.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2251 - Bump jupyter-core from 5.4.0 to 5.5.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2250 - Bump traitlets from 5.12.0 to 5.13.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2249 - Add strictness to drug-metabolite

Pull Request - State: closed - Opened by antoniaih about 1 year ago

#2248 - Bump distributed from 2023.10.0 to 2023.10.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies

#2247 - Bump dask from 2023.10.0 to 2023.10.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#2246 - Bump networkx from 3.2 to 3.2.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2245 - Bump executing from 2.0.0 to 2.0.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#2244 - Use warnings instead of print for rxode/nlmixr warnings

Pull Request - State: closed - Opened by JohanWBorg about 1 year ago - 1 comment