Ecosyste.ms: Issues

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GitHub / pharmpy/pharmpy issues and pull requests

#2487 - Bump pyright from 1.1.338 to 1.1.340

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 2 comments
Labels: dependencies

#2486 - Move retries integration tests to unit tests

Pull Request - State: closed - Opened by JohanWBorg 11 months ago - 2 comments

#2485 - Add total drug and total target to TMDD

Pull Request - State: closed - Opened by antoniaih 11 months ago - 1 comment

#2484 - ModelEntry in modelfit

Pull Request - State: closed - Opened by JohanWBorg 11 months ago - 2 comments

#2483 - Support Total drug and total target for TMDD models

Issue - State: closed - Opened by rikardn 11 months ago - 1 comment
Labels: enhancement

#2481 - Bump prompt-toolkit from 3.0.41 to 3.0.42

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#2480 - Bump distlib from 0.3.7 to 0.3.8

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#2479 - Bump babel from 2.13.1 to 2.14.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#2478 - Bump black from 23.11.0 to 23.12.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#2477 - Use final estimates in retries tool / base model in modelsearch

Pull Request - State: closed - Opened by JohanWBorg 11 months ago

#2476 - Create new function for V and Cl parameters

Pull Request - State: closed - Opened by antoniaih 11 months ago - 2 comments

#2475 - R version in configuration file ignore

Issue - State: open - Opened by JohanWBorg 11 months ago

#2474 - Bump numexpr from 2.8.7 to 2.8.8

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#2473 - Bump fsspec from 2023.12.1 to 2023.12.2

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#2472 - Bump isort from 5.13.0 to 5.13.1

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#2471 - Covariance calculation only for top N models

Issue - State: open - Opened by sardnar 11 months ago - 3 comments
Labels: enhancement

#2470 - Add variable for rate/dur in nlmixr/rxode conversion

Pull Request - State: closed - Opened by JohanWBorg 11 months ago

#2469 - Update structsearch documentation

Pull Request - State: closed - Opened by antoniaih 11 months ago - 1 comment

#2468 - Change description for structural/exploratory covariates

Pull Request - State: closed - Opened by JohanWBorg 11 months ago - 2 comments

#2467 - Bump isort from 5.12.0 to 5.13.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#2466 - Bump typing-extensions from 4.8.0 to 4.9.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#2465 - Bump pandas from 2.1.3 to 2.1.4

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#2464 - Bump pathspec from 0.11.2 to 0.12.1

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#2463 - Wrong model transformation when add_peripheral_compartment to "MIX-FO-MM"

Issue - State: closed - Opened by keqiss 12 months ago - 2 comments

#2462 - Remove overuse of Pharmpy in user guide titles

Pull Request - State: closed - Opened by JohanWBorg 12 months ago - 2 comments

#2461 - Make large Pharmpy logo on starting page non-clickable

Issue - State: closed - Opened by JohanWBorg 12 months ago
Labels: docs

#2459 - Update figures

Issue - State: closed - Opened by stellabelin 12 months ago
Labels: docs

#2458 - Update documentation retries

Issue - State: open - Opened by antoniaih 12 months ago
Labels: docs

#2457 - Update documentation estmethod

Issue - State: open - Opened by antoniaih 12 months ago
Labels: docs

#2456 - Update documentation Ruvsearch

Issue - State: open - Opened by antoniaih 12 months ago
Labels: docs

#2455 - Update documentation Covsearch

Issue - State: open - Opened by antoniaih 12 months ago - 1 comment
Labels: docs

#2454 - Update documentation Iovsearch

Issue - State: open - Opened by antoniaih 12 months ago
Labels: docs

#2453 - Update documentation Iivsearch

Issue - State: open - Opened by antoniaih 12 months ago
Labels: docs

#2452 - Update documentation structsearch

Issue - State: closed - Opened by antoniaih 12 months ago
Labels: docs

#2451 - Update documentation Modelsearch

Issue - State: open - Opened by antoniaih 12 months ago
Labels: docs

#2450 - Update documentation for AMD

Issue - State: open - Opened by antoniaih 12 months ago
Labels: docs

#2449 - Remove ML tables in documentation from different subtools

Issue - State: closed - Opened by stellabelin 12 months ago - 1 comment
Labels: docs

#2448 - Link to arguments in description

Issue - State: closed - Opened by stellabelin 12 months ago - 1 comment
Labels: docs

#2447 - Create General tab for tools

Issue - State: closed - Opened by stellabelin 12 months ago
Labels: docs

#2446 - Revise CLI functionality

Issue - State: open - Opened by rikardn 12 months ago

#2445 - Use code formatter to sort __all__ lists

Issue - State: open - Opened by rikardn 12 months ago
Labels: docs

#2444 - Categorize API documentation for modeling functions

Issue - State: open - Opened by rikardn 12 months ago
Labels: docs

#2443 - Revise getting started documentation

Issue - State: open - Opened by rikardn 12 months ago
Labels: docs

#2442 - Improve citation/references page

Issue - State: open - Opened by rikardn 12 months ago
Labels: docs

#2441 - Fewer bullets on landing page

Issue - State: open - Opened by rikardn 12 months ago
Labels: docs

#2440 - Proper capitalization of rxode on landing page

Issue - State: closed - Opened by rikardn 12 months ago
Labels: docs

#2439 - Support multiple DVs for plots

Issue - State: open - Opened by rikardn 12 months ago
Labels: enhancement

#2438 - More code examples in tool documentation

Issue - State: open - Opened by rikardn 12 months ago
Labels: docs

#2437 - Raise/warn if arguments to structsearch is invalid for that type

Issue - State: closed - Opened by stellabelin 12 months ago - 1 comment

#2436 - Support parsing of all models in scope

Issue - State: open - Opened by rikardn 12 months ago

#2435 - Support pretty printing of all models in scope

Issue - State: open - Opened by rikardn 12 months ago

#2434 - Do not rely on names for compartments

Issue - State: open - Opened by rikardn 12 months ago

#2433 - Change sign in QSS models

Pull Request - State: closed - Opened by antoniaih 12 months ago - 1 comment

#2430 - Add dv_types to structsearch for TMDD in AMD

Pull Request - State: closed - Opened by antoniaih 12 months ago

#2429 - Add dv_types to documentation. Add validation for dv_types

Pull Request - State: closed - Opened by antoniaih 12 months ago

#2428 - Allow for mechanistic covariates (in AMD) to be specific parameter-covariate combinations

Issue - State: closed - Opened by JohanWBorg 12 months ago - 2 comments
Labels: enhancement

#2427 - Use ModelEntry in ruvsearch tool (#2080, closes #2179)

Pull Request - State: closed - Opened by stellabelin 12 months ago - 1 comment

#2426 - Fix bugs with dataset filtering for TMDD in AMD

Pull Request - State: closed - Opened by antoniaih 12 months ago - 2 comments

#2425 - Bump pyright from 1.1.338 to 1.1.339

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#2424 - allow negative values in DV

Issue - State: closed - Opened by sardnar 12 months ago - 5 comments

#2423 - Ignore=@?

Issue - State: open - Opened by sardnar 12 months ago - 3 comments

#2422 - iivsearch crash for problematic model

Issue - State: closed - Opened by rikardn 12 months ago - 1 comment
Labels: bug

#2421 - Change init of KM (#2287)

Pull Request - State: closed - Opened by antoniaih 12 months ago - 3 comments

#2420 - Integrate parameter_sampling in retries tool

Pull Request - State: closed - Opened by JohanWBorg 12 months ago - 1 comment

#2419 - Bad error for bad strategy to iiv_search

Issue - State: closed - Opened by rikardn 12 months ago
Labels: bug

#2418 - Bump fsspec from 2023.12.0 to 2023.12.1

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2417 - Fix failing retries integration test

Pull Request - State: closed - Opened by JohanWBorg 12 months ago - 1 comment

#2416 - Change to new naming for optional covariates in integration test

Pull Request - State: closed - Opened by JohanWBorg 12 months ago - 2 comments

#2415 - Bump platformdirs from 4.0.0 to 4.1.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2414 - Bump nbconvert from 7.11.0 to 7.12.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2413 - Bump pytest-asyncio from 0.21.1 to 0.23.2

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2412 - Retries tool

Pull Request - State: closed - Opened by JohanWBorg 12 months ago - 2 comments

#2411 - Bump importlib-metadata from 6.8.0 to 7.0.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2410 - Bump distributed from 2023.11.0 to 2023.12.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#2409 - Bump pytest-asyncio from 0.21.1 to 0.23.1

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#2408 - Bump virtualenv from 20.24.7 to 20.25.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2407 - Bump dask from 2023.11.0 to 2023.12.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#2406 - Bump fsspec from 2023.10.0 to 2023.12.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2405 - Only validate optional covariate for COVARIATE attributes

Pull Request - State: closed - Opened by JohanWBorg 12 months ago - 1 comment

#2404 - Warnings in doctests

Issue - State: closed - Opened by rikardn 12 months ago - 1 comment
Labels: docs

#2403 - Correctly expand covariate mfl statements

Pull Request - State: closed - Opened by JohanWBorg 12 months ago

#2402 - Write comparison file when comparing verifying RxODE

Pull Request - State: closed - Opened by JohanWBorg 12 months ago - 3 comments

#2401 - Bump jsonschema-specifications from 2023.11.1 to 2023.11.2

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2400 - Add a way of showing plots in docstrings

Issue - State: closed - Opened by rikardn 12 months ago - 1 comment
Labels: docs

#2399 - errors when building documentation

Issue - State: closed - Opened by rikardn 12 months ago - 1 comment
Labels: docs

#2398 - Bump tornado from 6.3.3 to 6.4

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2397 - Bump referencing from 0.31.0 to 0.31.1

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2396 - Bump rpds-py from 0.13.1 to 0.13.2

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2395 - Bump pyright from 1.1.337 to 1.1.338

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2394 - Bump platformdirs from 3.11.0 to 4.0.0 (fixes #2318)

Pull Request - State: closed - Opened by rikardn 12 months ago - 1 comment

#2392 - Automatic initial estimate tool

Issue - State: open - Opened by sardnar 12 months ago - 1 comment
Labels: enhancement

#2391 - Bump altair from 5.1.2 to 5.2.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2390 - Bump tox from 4.11.3 to 4.11.4

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2389 - TIME symbol as T in $DES breaks tools search

Issue - State: open - Opened by sardnar 12 months ago - 4 comments

#2388 - Bump ipykernel from 6.27.0 to 6.27.1

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2387 - Bump ipython from 8.18.0 to 8.18.1

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#2386 - Bump traitlets from 5.13.0 to 5.14.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies