pharmpy/pharmpy issues and pull requests

#3643 - Bump numpy from 2.2.2 to 2.2.3

Pull Request - State: open - Opened by dependabot[bot] 3 days ago
Labels: dependencies

#3642 - Bump psutil from 6.1.1 to 7.0.0

Pull Request - State: open - Opened by dependabot[bot] 3 days ago
Labels: dependencies

#3641 - Bump the dask group with 2 updates

Pull Request - State: open - Opened by dependabot[bot] 3 days ago
Labels: dependencies

#3640 - fix: Add Windows support for Rscript executable in get_rpath function

Pull Request - State: closed - Opened by ezraluuu 4 days ago - 1 comment

#3639 - Bump pyright from 1.1.393 to 1.1.394

Pull Request - State: closed - Opened by dependabot[bot] 4 days ago
Labels: dependencies

#3638 - iivsearch failed with certain input RUVstructure: IIV_on_RUV+time_varying1

Issue - State: open - Opened by yahanhsutw 5 days ago

#3637 - Bump cryptography from 44.0.0 to 44.0.1

Pull Request - State: closed - Opened by dependabot[bot] 5 days ago
Labels: dependencies

#3636 - ABS(*) should not contain INST absorption

Issue - State: open - Opened by rikardn 6 days ago

#3635 - Change COVARIATE mfl example in AMD documentation

Issue - State: closed - Opened by rikardn 6 days ago - 1 comment
Labels: docs

#3634 - Remove * from cov func in MFL

Issue - State: open - Opened by rikardn 6 days ago

#3633 - Change search space type hint in COVSearch

Issue - State: open - Opened by stellabelin 6 days ago - 1 comment

#3632 - Change initial estimate of covariate init

Issue - State: open - Opened by stellabelin 6 days ago

#3631 - Change value of IPREDADJ

Issue - State: closed - Opened by stellabelin 6 days ago - 1 comment

#3630 - Bump narwhals from 1.25.2 to 1.26.0

Pull Request - State: closed - Opened by dependabot[bot] 6 days ago
Labels: dependencies

#3629 - Bump lxml from 5.3.0 to 5.3.1

Pull Request - State: closed - Opened by dependabot[bot] 6 days ago
Labels: dependencies

#3628 - Bump virtualenv from 20.29.1 to 20.29.2

Pull Request - State: closed - Opened by dependabot[bot] 6 days ago
Labels: dependencies

#3627 - Bump pip from 25.0 to 25.0.1

Pull Request - State: closed - Opened by dependabot[bot] 7 days ago
Labels: dependencies

#3626 - Do not raise if all models fail in modelsearch (or any tool)

Issue - State: open - Opened by rikardn 10 days ago
Labels: bug

#3625 - Bump narwhals from 1.25.1 to 1.25.2

Pull Request - State: closed - Opened by dependabot[bot] 10 days ago
Labels: dependencies

#3624 - Bump narwhals from 1.25.0 to 1.25.1

Pull Request - State: closed - Opened by dependabot[bot] 11 days ago
Labels: dependencies

#3623 - Inconsistent representation of IOV when creating vs reading NONMEM model

Issue - State: open - Opened by stellabelin 12 days ago
Labels: bug

#3622 - SIR as extra uncertainty tool

Issue - State: open - Opened by OmarAshkar 12 days ago - 1 comment

#3621 - Bump beautifulsoup4 from 4.13.1 to 4.13.3

Pull Request - State: closed - Opened by dependabot[bot] 12 days ago
Labels: dependencies

#3620 - Warn when base model fails in AMD

Issue - State: closed - Opened by stellabelin 13 days ago

#3619 - Update summary tables for TMDD structsearch

Issue - State: open - Opened by stellabelin 13 days ago

#3618 - run_amd (TMDD) is completing only model search and a BUG report is generated before structural search

Issue - State: closed - Opened by Orwa-bit 13 days ago - 1 comment

#3617 - Bump narwhals from 1.24.2 to 1.25.0

Pull Request - State: closed - Opened by dependabot[bot] 13 days ago
Labels: dependencies

#3616 - Bump beautifulsoup4 from 4.13.0 to 4.13.1

Pull Request - State: closed - Opened by dependabot[bot] 13 days ago
Labels: dependencies

#3615 - Bump fsspec from 2024.12.0 to 2025.2.0

Pull Request - State: closed - Opened by dependabot[bot] 14 days ago
Labels: dependencies

#3614 - Bump beautifulsoup4 from 4.12.3 to 4.13.0

Pull Request - State: closed - Opened by dependabot[bot] 14 days ago - 2 comments
Labels: dependencies

#3613 - Bump ipython from 8.31.0 to 8.32.0

Pull Request - State: closed - Opened by dependabot[bot] 14 days ago
Labels: dependencies

#3612 - Bump narwhals from 1.24.1 to 1.24.2

Pull Request - State: closed - Opened by dependabot[bot] 14 days ago
Labels: dependencies

#3611 - Bump babel from 2.16.0 to 2.17.0

Pull Request - State: closed - Opened by dependabot[bot] 14 days ago
Labels: dependencies

#3610 - Bump certifi from 2024.12.14 to 2025.1.31

Pull Request - State: closed - Opened by dependabot[bot] 14 days ago
Labels: dependencies

#3609 - Bump pytz from 2024.2 to 2025.1

Pull Request - State: closed - Opened by dependabot[bot] 14 days ago
Labels: dependencies

#3608 - Failed ruvsearch for drug-metabolite

Issue - State: open - Opened by yahanhsutw 15 days ago

#3607 - run_structsearch failed updating parameter estimates

Issue - State: open - Opened by yahanhsutw 15 days ago

#3606 - Bump pyzmq from 26.2.0 to 26.2.1

Pull Request - State: closed - Opened by dependabot[bot] 17 days ago
Labels: dependencies

#3605 - Bump black from 24.10.0 to 25.1.0

Pull Request - State: closed - Opened by dependabot[bot] 18 days ago - 2 comments
Labels: dependencies

#3604 - Bump pyright from 1.1.392.post0 to 1.1.393

Pull Request - State: closed - Opened by dependabot[bot] 18 days ago - 2 comments
Labels: dependencies

#3603 - Bump mistune from 3.1.0 to 3.1.1

Pull Request - State: closed - Opened by dependabot[bot] 19 days ago
Labels: dependencies

#3602 - Bump nbconvert from 7.16.5 to 7.16.6

Pull Request - State: closed - Opened by dependabot[bot] 19 days ago
Labels: dependencies

#3601 - Bump narwhals from 1.24.0 to 1.24.1

Pull Request - State: closed - Opened by dependabot[bot] 19 days ago
Labels: dependencies

#3600 - Bump pytest-asyncio from 0.25.2 to 0.25.3

Pull Request - State: closed - Opened by dependabot[bot] 19 days ago
Labels: dependencies

#3599 - Spacing yields parsing issues

Issue - State: open - Opened by AMCasablancas 20 days ago - 1 comment

#3598 - issue with the argument mechanistic_covariates

Issue - State: open - Opened by rosemarychen99 20 days ago

#3597 - Bump narwhals from 1.23.0 to 1.24.0

Pull Request - State: closed - Opened by dependabot[bot] 20 days ago
Labels: dependencies

#3596 - Bump isort from 5.13.2 to 6.0.0

Pull Request - State: closed - Opened by dependabot[bot] 20 days ago
Labels: dependencies

#3595 - Bump attrs from 24.3.0 to 25.1.0

Pull Request - State: closed - Opened by dependabot[bot] 21 days ago
Labels: dependencies

#3594 - Bump referencing from 0.36.1 to 0.36.2

Pull Request - State: closed - Opened by dependabot[bot] 21 days ago
Labels: dependencies

#3593 - Bump pip from 24.3.1 to 25.0

Pull Request - State: closed - Opened by dependabot[bot] 21 days ago
Labels: dependencies

#3592 - Bump executing from 2.1.0 to 2.2.0

Pull Request - State: closed - Opened by dependabot[bot] 25 days ago
Labels: dependencies

#3591 - structsearch for drug-metabolite failed with PERIPHERALS(1) model

Issue - State: open - Opened by yahanhsutw 26 days ago - 1 comment

#3590 - run_amd() for drug-metabolite failed during structsearch

Issue - State: open - Opened by yahanhsutw 26 days ago

#3589 - Bump tox from 4.23.2 to 4.24.1

Pull Request - State: closed - Opened by dependabot[bot] 26 days ago
Labels: dependencies

#3588 - Bump twine from 6.0.1 to 6.1.0

Pull Request - State: closed - Opened by dependabot[bot] 26 days ago
Labels: dependencies

#3587 - Bump cachetools from 5.5.0 to 5.5.1

Pull Request - State: closed - Opened by dependabot[bot] 26 days ago
Labels: dependencies

#3586 - Bump pyproject-api from 1.8.0 to 1.9.0

Pull Request - State: closed - Opened by dependabot[bot] 26 days ago
Labels: dependencies

#3585 - Bump tzdata from 2024.2 to 2025.1

Pull Request - State: closed - Opened by dependabot[bot] 26 days ago
Labels: dependencies

#3584 - Bump filelock from 3.16.1 to 3.17.0

Pull Request - State: closed - Opened by dependabot[bot] 26 days ago
Labels: dependencies

#3583 - Fix $SIZES update issue

Pull Request - State: closed - Opened by pengmanhht 27 days ago

#3582 - Bump prompt-toolkit from 3.0.48 to 3.0.50

Pull Request - State: closed - Opened by dependabot[bot] 27 days ago
Labels: dependencies

#3581 - Bump importlib-metadata from 8.5.0 to 8.6.1

Pull Request - State: closed - Opened by dependabot[bot] 27 days ago
Labels: dependencies

#3580 - Bump narwhals from 1.22.0 to 1.23.0

Pull Request - State: closed - Opened by dependabot[bot] 27 days ago
Labels: dependencies

#3579 - Bump numpy from 2.2.1 to 2.2.2

Pull Request - State: closed - Opened by dependabot[bot] 28 days ago
Labels: dependencies

#3578 - Bump virtualenv from 20.29.0 to 20.29.1

Pull Request - State: closed - Opened by dependabot[bot] 28 days ago
Labels: dependencies

#3577 - Bump the dask group with 2 updates

Pull Request - State: closed - Opened by dependabot[bot] 28 days ago
Labels: dependencies

#3576 - Do not force positive semi-definiteness when using Model.create

Issue - State: open - Opened by stellabelin about 1 month ago

#3575 - Do not force positive semi-definitiveness when parsing a model

Issue - State: open - Opened by stellabelin about 1 month ago

#3574 - Raise specific exception when parameters are invalid

Issue - State: open - Opened by stellabelin about 1 month ago

#3573 - Add option to enforce positive semi-definitiveness in set_initial_estimates

Issue - State: open - Opened by stellabelin about 1 month ago

#3572 - Fix move_ests_close_to_bound option in set_initial_estimates

Issue - State: closed - Opened by stellabelin about 1 month ago - 1 comment