petermr/openVirus issues and pull requests

#93 - Bump Newtonsoft.Json from 12.0.3 to 13.0.2 in /textIndexing/DOAJSplitter/DOAJSplitter

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#92 - Double Backslash problem in Windows - Jupyter Notebook

Issue - State: open - Opened by ShweataNHegde almost 4 years ago - 2 comments

#91 - Data tables created from `ami search` doesn't direct to right Wikipedia links to terms, most of the times.

Issue - State: open - Opened by ShweataNHegde almost 4 years ago

#90 - install1.py

Pull Request - State: closed - Opened by remote007 about 4 years ago

#89 - Updated

Pull Request - State: closed - Opened by remote007 about 4 years ago - 1 comment

#88 - For getpapers:- "Dockerfile: cannot find the file specified."

Issue - State: open - Opened by Priya-Jk-15 about 4 years ago - 25 comments

#87 - Problem running getpapers on Docker

Issue - State: open - Opened by ShweataNHegde about 4 years ago - 6 comments

#86 - no results in ami search

Issue - State: open - Opened by saifisana about 4 years ago

#85 - ami search: reads the customised dictionary improperly

Issue - State: open - Opened by vaishaliarora277 about 4 years ago

#84 - create ami commands for datatables and cooccurrence

Issue - State: open - Opened by petermr about 4 years ago

#83 - Unable to install getpapers

Issue - State: closed - Opened by ShweataNHegde about 4 years ago - 2 comments

#82 - Urdu fonts are missing

Issue - State: open - Opened by Pruthivrajan about 4 years ago - 1 comment

#81 - amidict syntax : input file is taken as <dictionary title>

Issue - State: closed - Opened by Priya-Jk-15 about 4 years ago - 13 comments

#80 - ami search: some files empty for customized dictionary

Issue - State: open - Opened by AmbrineH about 4 years ago - 14 comments

#79 - 'exit status 1 : not recognised as operable program or batch file' : nvm installation

Issue - State: closed - Opened by vaishaliarora277 about 4 years ago - 1 comment

#78 - _cooccurence folder formed by ami-search contains empty subfolders

Issue - State: closed - Opened by Priya-Jk-15 about 4 years ago - 4 comments

#77 - SPARQL2ami : needed amidict syntax for dictionary creation

Issue - State: closed - Opened by vaishaliarora277 about 4 years ago - 4 comments

#76 - getpapers fetching papers timeout issue

Issue - State: open - Opened by ZeyangCharlesLi about 4 years ago - 1 comment

#75 - ami search

Issue - State: closed - Opened by Pruthivrajan about 4 years ago - 2 comments

#74 - Git Desktop: fatal: the remote end hung up unexpectedly

Issue - State: closed - Opened by AmbrineH over 4 years ago - 2 comments

#73 - ami search: 'OutOfMemoryError'

Issue - State: closed - Opened by vaishaliarora277 over 4 years ago - 18 comments

#72 - amidict ingest SPARQL search

Issue - State: open - Opened by petermr over 4 years ago

#71 - amidict merge

Issue - State: open - Opened by petermr over 4 years ago

#70 - small typo fix

Pull Request - State: open - Opened by egonw over 4 years ago

#69 - Switching docker to Windows container in Windows 10 pro

Issue - State: open - Opened by Priya-Jk-15 over 4 years ago

#68 - Problem installing ami3

Issue - State: closed - Opened by Pruthivrajan over 4 years ago - 1 comment

#67 - getpapers "download text-mined terms" not working?

Issue - State: open - Opened by EmanuelFaria over 4 years ago

#66 - Blogpost for GenR and FORCE11

Issue - State: open - Opened by mrchristian over 4 years ago - 1 comment

#65 - getpapers "exact phrase" queries not working.

Issue - State: open - Opened by EmanuelFaria over 4 years ago - 2 comments

#64 - getpapers FATAL ERROR when downloading 30k articles or more

Issue - State: open - Opened by EmanuelFaria over 4 years ago - 9 comments

#63 - Problem in creating dictionary using `ami-dictionary`

Issue - State: open - Opened by kareenasingh over 4 years ago - 1 comment

#62 - Running `amidict` or `ami-dictionary` in Windows 10

Issue - State: open - Opened by Priya-Jk-15 over 4 years ago - 21 comments

#61 - `ami3` `picocli` parsing error creates `ClassCastException`

Issue - State: open - Opened by petermr over 4 years ago - 5 comments

#60 - Copying 'ContentMine folder' onto desktop for 'AMI' installation in Windows 10

Issue - State: closed - Opened by Priya-Jk-15 over 4 years ago - 5 comments

#59 - problem installing nvm-setup for getpapers

Issue - State: closed - Opened by kareenasingh over 4 years ago - 6 comments

#58 - Problem running Medrxiv in windows 10

Issue - State: open - Opened by Priya-Jk-15 over 4 years ago - 6 comments

#57 - "Make"-like facility in `AMI`

Issue - State: open - Opened by petermr over 4 years ago

#56 - NPE in `AMI.execute` without subcommand

Issue - State: open - Opened by petermr over 4 years ago - 4 comments

#55 - getpapers error: "the syntax of the command is incorrect"

Issue - State: open - Opened by kareenasingh over 4 years ago - 8 comments

#54 - Installing getpapers ami for use on OCKProject

Issue - State: open - Opened by mrchristian over 4 years ago - 4 comments

#53 - Problem installing `Node.js` for `getpapers`

Issue - State: open - Opened by petermr over 4 years ago - 11 comments

#52 - amidict --dictionary argument has no effect

Issue - State: open - Opened by richardofsussex over 4 years ago

#51 - Testing medrxiv python/ferret downloader

Issue - State: open - Opened by petermr over 4 years ago - 21 comments

#50 - Empty XML 'count' and 'documents' files output by AMISearch

Issue - State: open - Opened by richardofsussex over 4 years ago - 1 comment

#49 - Medicinal chemistry extraction

Issue - State: open - Opened by cdsouthan over 4 years ago - 1 comment

#48 - Uber-dictionary created

Pull Request - State: closed - Opened by richardofsussex over 4 years ago

#47 - BiorxivDownload fails to create correct hit lists (URGENT)

Issue - State: open - Opened by petermr over 4 years ago

#46 - AMIPDFTool fails to parse commandline / options

Issue - State: open - Opened by petermr over 4 years ago

#45 - AMICleanTest.testCleanForestPlotsSmall fails on unzipping

Issue - State: open - Opened by petermr over 4 years ago

#44 - getpapers error when outputting mined terms summary

Issue - State: open - Opened by richardofsussex over 4 years ago

#43 - NullPointerException in AMIGetpapersTool

Issue - State: closed - Opened by richardofsussex over 4 years ago - 1 comment

#42 - `ami-download` and `AMIDownloadTool.runCommands(args) behave differently

Issue - State: open - Opened by petermr over 4 years ago - 1 comment

#41 - `ami download` and `ami-download` behave differently

Issue - State: open - Opened by petermr over 4 years ago

#40 - Data visualisation

Issue - State: open - Opened by TS404 over 4 years ago - 16 comments

#39 - Documenting Testing Expanding AMIDownload

Issue - State: open - Opened by petermr over 4 years ago - 5 comments

#38 - Create LICENSE

Pull Request - State: closed - Opened by TS404 over 4 years ago

#37 - Maven install error on windows

Issue - State: open - Opened by TS404 over 4 years ago - 1 comment

#36 - Added results from EThOS sample.

Pull Request - State: closed - Opened by anjackson over 4 years ago

#35 - Update instructions for getpapers

Pull Request - State: open - Opened by anjackson over 4 years ago

#34 - Get the DOAJ articles into Solr

Issue - State: open - Opened by deadlyvices over 4 years ago - 5 comments

#33 - A place to put paper metadata and extractions

Issue - State: closed - Opened by markmacgillivray over 4 years ago - 1 comment

#32 - Investigate DOAJ

Issue - State: open - Opened by petermr over 4 years ago - 13 comments

#31 - Setup Solr for handling ami output

Issue - State: open - Opened by deadlyvices over 4 years ago

#30 - Face Mask knowledge extraction

Issue - State: open - Opened by petermr over 4 years ago - 2 comments

#29 - Scraper for Royal Society Publishing

Issue - State: open - Opened by axiomsofchoice over 4 years ago - 6 comments
Labels: scrapers

#28 - Communication within project and further

Issue - State: open - Opened by petermr over 4 years ago - 3 comments

#27 - Managing enquiries and communal discussion.

Issue - State: open - Opened by petermr over 4 years ago

#26 - coordinate software maintenance in `openVirus` and `ami3`

Issue - State: open - Opened by petermr over 4 years ago - 3 comments
Labels: ami3

#25 - Grobid exe and input/output locations

Issue - State: open - Opened by petermr over 4 years ago - 2 comments

#24 - Incorrect CLASSPATH in installation documentation

Issue - State: open - Opened by axiomsofchoice over 4 years ago - 5 comments
Labels: documentation

#23 - petermr git large file

Issue - State: closed - Opened by petermr over 4 years ago - 6 comments

#22 - Add Docker packaging

Pull Request - State: closed - Opened by ml-evs over 4 years ago - 10 comments

#21 - dictionaries from navbox templates

Issue - State: open - Opened by TS404 over 4 years ago

#20 - Gather publications from Wikidata item info

Issue - State: open - Opened by TS404 over 4 years ago - 2 comments

#19 - check dictionaries and add to OpenNotebook

Issue - State: open - Opened by petermr over 4 years ago - 2 comments

#18 - Scraper for Semantic Scholar index

Issue - State: open - Opened by TS404 over 4 years ago - 1 comment
Labels: scrapers

#17 - dataframe/tibble to quickstatements

Issue - State: closed - Opened by TS404 over 4 years ago - 3 comments

#16 - Scraper for WHO covid index

Issue - State: open - Opened by TS404 over 4 years ago
Labels: scrapers

#15 - Need to write from [R] to wikidata via API

Issue - State: open - Opened by TS404 over 4 years ago - 7 comments

#14 - Add a LICENSE file

Issue - State: closed - Opened by Daniel-Mietchen over 4 years ago - 4 comments
Labels: documentation

#13 - Fix the typos in the tag line

Issue - State: closed - Opened by Daniel-Mietchen over 4 years ago

#12 - resource: Semantic Scholar AI2 CORD-19 dataset

Issue - State: open - Opened by bnewbold over 4 years ago

#11 - resource: fatcat.wiki

Issue - State: open - Opened by bnewbold over 4 years ago

#10 - creation of dictionaries from Wikipedia Categories

Issue - State: open - Opened by petermr over 4 years ago

#9 - creation of dictionaries from wikipedia pages

Issue - State: open - Opened by petermr over 4 years ago - 2 comments

#8 - document and refine adding sections with AMI

Issue - State: open - Opened by petermr over 4 years ago
Labels: documentation

#7 - multiple subfiles

Issue - State: open - Opened by petermr over 4 years ago

#6 - Add files via upload

Pull Request - State: closed - Opened by TS404 over 4 years ago

#5 - Scraper for biorxiv and medrxiv

Issue - State: open - Opened by petermr over 4 years ago - 1 comment
Labels: scrapers

#4 - Scraper for Redalyc

Issue - State: open - Opened by petermr over 4 years ago
Labels: scrapers

#3 - create dictionary for Viruses

Issue - State: open - Opened by petermr over 4 years ago

#2 - Fix empty <title> in AMI-Search dataTables

Issue - State: open - Opened by petermr over 4 years ago - 12 comments

#1 - List of Open Resources

Issue - State: open - Opened by petermr over 4 years ago - 6 comments

GitHub / petermr/openVirus issues and pull requests