Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / peterk87/xlavir issues and pull requests
#21 - Fix for nf-core/viralrecon Medaka VCF sample extraction
Pull Request -
State: closed - Opened by peterk87 over 2 years ago
- 1 comment
#20 - Fix low/no coverage sample Medaka VCF parsing
Pull Request -
State: closed - Opened by peterk87 over 2 years ago
- 1 comment
#19 - Highlight variant sites with no coverage vs matching ref allele
Issue -
State: open - Opened by peterk87 over 2 years ago
#18 - Colour highlighting of different gene features in variant matrix
Issue -
State: open - Opened by peterk87 over 2 years ago
#17 - Add support for Medaka annotated VCFs
Pull Request -
State: closed - Opened by peterk87 over 2 years ago
- 1 comment
#16 - Fix consensus issue
Pull Request -
State: closed - Opened by peterk87 over 2 years ago
- 1 comment
#15 - Fixes for creating reports for large non-SARS-CoV-2 viruses
Pull Request -
State: closed - Opened by peterk87 over 2 years ago
- 1 comment
#14 - nf-core/viralrecon samtools flagstat total reads is not actual total reads
Issue -
State: closed - Opened by peterk87 almost 3 years ago
#13 - Fix #12 iVar ref allele depth
Pull Request -
State: closed - Opened by peterk87 almost 3 years ago
- 1 comment
#12 - iVar VCF indel ref allele depth not like with other variant callers
Issue -
State: closed - Opened by peterk87 almost 3 years ago
Labels: bug
#11 - Add ARTIC Nanopolish VCF support
Pull Request -
State: closed - Opened by peterk87 almost 3 years ago
- 1 comment
#10 - Fix Mosdepth single position reported as 0-based
Pull Request -
State: closed - Opened by peterk87 almost 3 years ago
- 1 comment
#9 - Support for nf-core/viralrecon v2.0
Pull Request -
State: closed - Opened by peterk87 about 3 years ago
- 1 comment
#8 - Minor QoL improvements
Pull Request -
State: closed - Opened by peterk87 about 3 years ago
- 1 comment
#7 - Add Variant Summary sheet
Pull Request -
State: closed - Opened by peterk87 about 3 years ago
- 1 comment
#6 - Add option to add Ct values to QC stats table from a Ct values table
Pull Request -
State: closed - Opened by peterk87 about 3 years ago
- 1 comment
#5 - Fix series var naming
Pull Request -
State: closed - Opened by peterk87 about 3 years ago
- 1 comment
#4 - Check SnpSift column dtype is str
Pull Request -
State: closed - Opened by peterk87 about 3 years ago
- 1 comment
#3 - Fix snpeff parsing
Pull Request -
State: closed - Opened by peterk87 over 3 years ago
- 1 comment
#2 - Patch to fix division by zero error due to variants with DP values of 0
Pull Request -
State: closed - Opened by peterk87 over 3 years ago
- 1 comment
#1 - Release v0.2.0
Pull Request -
State: closed - Opened by peterk87 over 3 years ago
- 1 comment