perslab/CELLEX issues and pull requests

#39 - Why all genes showing NaN for the esmu score in one of the cell types on my end?

Issue - State: open - Opened by nh-codem 16 days ago

#38 - np.float needs to be changed float due to deprecation in Numpy

Issue - State: closed - Opened by JordanWean 6 months ago - 3 comments

#37 - [BUG]: eso.compute error.

Issue - State: closed - Opened by myylee 7 months ago - 3 comments

#36 - [FEATURE REQUEST]: Work with large datasets

Issue - State: closed - Opened by brianlamx over 1 year ago - 1 comment

#35 - Update requirements.txt

Pull Request - State: closed - Opened by pvtodorov over 1 year ago

#34 - [BUG]: Operands could not be broadcast together with shapes (15831,12) (15831,15830,13)

Issue - State: closed - Opened by LIZW2019 almost 2 years ago - 3 comments

#33 - [BUG]:Error running eso.compute

Issue - State: closed - Opened by andrewjkwok about 2 years ago - 2 comments

#32 - Load input data as sparse matrix

Issue - State: closed - Opened by DaianeH over 2 years ago - 2 comments
Labels: question

#31 - [BUG]: Error saving summary data

Issue - State: closed - Opened by dah77 over 2 years ago - 3 comments
Labels: bug

#30 - Metadata_class use

Issue - State: closed - Opened by andreanuzzo over 3 years ago - 6 comments

#28 - [BUG]: MissingOutputException in line 200 of /home/wbone/CELLECT/cellect-ldsc.snakefile:

Issue - State: closed - Opened by wpbone06 almost 4 years ago

#27 - eso.results[“esmu”] data.frame lacks index column name

Issue - State: closed - Opened by JonThom over 4 years ago - 1 comment
Labels: bug

#26 - gene mapping function: from symbol to ensembl

Issue - State: closed - Opened by pascaltimshel over 4 years ago - 3 comments
Labels: enhancement, high priority

#25 - IndexError: tuple index out of range

Issue - State: closed - Opened by rrydbirk over 4 years ago - 1 comment

#24 - parse_input does not detect invalid metadata value types

Issue - State: open - Opened by rrydbirk over 4 years ago - 5 comments
Labels: check&catch

#23 - Warn if negative gene expression values

Issue - State: open - Opened by pascaltimshel over 4 years ago
Labels: medium priority, check&catch

#22 - Additional methods for gene filtering

Issue - State: open - Opened by pascaltimshel over 4 years ago

#21 - Make tutorial for how to import data from H5ad/loom(/Seurat)

Issue - State: open - Opened by pascaltimshel over 4 years ago

#20 - Improve mapping documentation

Issue - State: closed - Opened by tstannius over 4 years ago - 3 comments
Labels: documentation, medium priority

#19 - Update parameter name in CELLEX wiki

Issue - State: closed - Opened by JonThom over 4 years ago - 1 comment
Labels: documentation

#18 - Syntax Error in det.py file

Issue - State: closed - Opened by vidalmarroyo over 4 years ago - 12 comments

#17 - .txt.gz files for "mapping"-functions are not found

Issue - State: closed - Opened by bengnielsen over 4 years ago - 1 comment
Labels: bug

#16 - Reading in data with pandas in a server setting is slow. How can I speed this up?

Issue - State: closed - Opened by DaianeH over 4 years ago - 4 comments
Labels: documentation

#14 - Memory usage needs to be optimized

Issue - State: open - Opened by liubovpashkova almost 5 years ago - 2 comments
Labels: enhancement, high priority

#13 - New demo tutorial

Pull Request - State: closed - Opened by liubovpashkova almost 5 years ago - 1 comment

#12 - Can not generate n_es_gene plot

Issue - State: open - Opened by liubovpashkova almost 5 years ago
Labels: low priority

#11 - New functionality: implement geneset enrichment test

Issue - State: open - Opened by pascaltimshel almost 5 years ago
Labels: enhancement

#10 - Error in READ.ME

Issue - State: closed - Opened by liubovpashkova about 5 years ago - 1 comment

#9 - mapping crashes due to FileNotFoundError

Issue - State: closed - Opened by tstannius about 5 years ago - 1 comment
Labels: bug

#8 - CELLEX crashes if duplicated cell_ids

Issue - State: closed - Opened by pascaltimshel about 5 years ago - 2 comments
Labels: bug, high priority

#7 - quick start tutorial: AttributeError: 'ESObject' object has no attribute 'save'

Issue - State: closed - Opened by JonThom about 5 years ago - 3 comments
Labels: bug

#6 - Updates, fixes

Pull Request - State: closed - Opened by pvtodorov about 5 years ago - 2 comments

#5 - quick start tutorial: bug when importing cellex module

Issue - State: closed - Opened by JonThom about 5 years ago - 2 comments
Labels: documentation

#4 - List requirements.txt in README