Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / percyfal/pytest-ngsfixtures issues and pull requests

#65 - Replace variables called 'async' with Python 3.7 friendly 'async_'

Pull Request - State: open - Opened by kpj over 5 years ago

#64 - Ensure p argument is a LocalPath

Issue - State: open - Opened by percyfal about 6 years ago

#63 - Add generic function to setup fixture data

Issue - State: closed - Opened by percyfal over 6 years ago

#62 - Use request in addition to pytest.mark to ease parametrization

Issue - State: closed - Opened by percyfal over 6 years ago - 2 comments

#61 - Correct layout for multi-run sample

Issue - State: closed - Opened by percyfal over 6 years ago

#60 - Add travis staging script

Issue - State: open - Opened by percyfal over 6 years ago

#59 - Update busybox images for tests

Issue - State: closed - Opened by percyfal over 6 years ago

#58 - Fix failing test

Issue - State: closed - Opened by percyfal over 6 years ago - 1 comment

#57 - Implement sample layout configuration

Issue - State: closed - Opened by percyfal over 6 years ago - 1 comment

#56 - Simplify runfmt_alias function

Issue - State: closed - Opened by percyfal over 6 years ago - 1 comment
Labels: invalid

#55 - Add small and medium to downloadable data sets

Issue - State: closed - Opened by percyfal over 6 years ago
Labels: invalid

#54 - Separate most of data from code

Issue - State: closed - Opened by percyfal over 6 years ago

#53 - Specific RNA-Seq data set needed

Issue - State: closed - Opened by percyfal over 6 years ago - 1 comment
Labels: invalid, pytest-data

#51 - Allow modification of path variable in shell wrapper

Issue - State: closed - Opened by percyfal almost 7 years ago

#50 - Install docker-py from conda

Issue - State: closed - Opened by percyfal almost 7 years ago

#49 - Add wrapper and examples for nextflow

Issue - State: open - Opened by percyfal almost 7 years ago

#48 - Add helper modules for workflow managers and schedulers

Issue - State: closed - Opened by percyfal almost 7 years ago - 1 comment

#47 - Enable only setting up sampleinfo in setup_sample_layout

Issue - State: closed - Opened by percyfal almost 7 years ago

#46 - Add tutorial and examples on setting up a workflow test

Issue - State: closed - Opened by percyfal almost 7 years ago

#45 - Layout function sets up wrong name on read 2 if alias required

Issue - State: closed - Opened by percyfal almost 7 years ago

#44 - Census should not be increased for second read in read pair

Issue - State: closed - Opened by percyfal almost 7 years ago

#43 - Add function to return runfmt and alias pair

Issue - State: closed - Opened by percyfal almost 7 years ago

#42 - alias is set two times, both in ReadFixtureFile and FixtureFile

Issue - State: closed - Opened by percyfal almost 7 years ago

#41 - Make sure ngs_layout and ngs_runfmt are lists

Issue - State: closed - Opened by percyfal almost 7 years ago

#40 - Update layout configurations for project labels

Issue - State: closed - Opened by percyfal almost 7 years ago

#39 - sampleinfo fastq output does not correspond with alias info

Issue - State: closed - Opened by percyfal almost 7 years ago

#38 - Add samplefmt configurations and aliases

Issue - State: closed - Opened by percyfal almost 7 years ago - 1 comment
Labels: invalid

#36 - All versions placeholder overwritten in target creation loop

Issue - State: closed - Opened by percyfal almost 7 years ago

#35 - Setup travis builds

Issue - State: closed - Opened by percyfal almost 7 years ago

#34 - Setting up reference layout throws an error

Issue - State: closed - Opened by percyfal almost 7 years ago
Labels: py3.5

#32 - Update option defaults

Issue - State: closed - Opened by percyfal almost 7 years ago

#31 - Expose fewer predefined fixtures via plugin

Issue - State: closed - Opened by percyfal almost 7 years ago

#30 - Move application output to separate package

Issue - State: closed - Opened by percyfal almost 7 years ago

#29 - Clarify fixture function naming convention

Issue - State: closed - Opened by percyfal almost 7 years ago

#28 - Add application configuration key

Issue - State: closed - Opened by percyfal almost 7 years ago
Labels: invalid

#27 - Create separate module for repo-related functions

Issue - State: closed - Opened by percyfal almost 7 years ago

#26 - Create separate module for os-related functions

Issue - State: closed - Opened by percyfal almost 7 years ago

#25 - Make sure bumpversion really updates versions

Issue - State: closed - Opened by percyfal almost 7 years ago - 1 comment

#24 - Make bulk of fixture factory inner functions visible

Issue - State: closed - Opened by percyfal almost 7 years ago

#22 - Add pool fixtures

Issue - State: closed - Opened by percyfal almost 7 years ago

#21 - Allow copy option for fixtures

Issue - State: closed - Opened by percyfal almost 7 years ago

#19 - Add data from different sequencing platforms and applications

Issue - State: closed - Opened by percyfal about 7 years ago
Labels: invalid

#18 - mapdamage2 rule output missing

Issue - State: closed - Opened by percyfal about 7 years ago

#17 - Download script fails

Issue - State: closed - Opened by percyfal about 7 years ago - 1 comment

#16 - Add output for samtools idxstats

Issue - State: closed - Opened by percyfal about 7 years ago - 1 comment

#15 - Add .g.vcf.fofn fixture

Issue - State: closed - Opened by percyfal over 7 years ago
Labels: invalid

#14 - Add qualimap output for -os flag

Issue - State: closed - Opened by percyfal over 7 years ago
Labels: invalid

#13 - Add 1000 genomes reference

Issue - State: open - Opened by percyfal over 7 years ago

#12 - Separate qualimap pe and se output

Issue - State: closed - Opened by percyfal over 7 years ago

#11 - Add support for mapdamage2

Issue - State: closed - Opened by percyfal over 7 years ago

#10 - Provide mapping from file types to fixture files

Issue - State: closed - Opened by percyfal over 7 years ago - 2 comments
Labels: invalid

#9 - Handle applications with different se/pe output correctly

Issue - State: closed - Opened by percyfal over 7 years ago
Labels: invalid

#8 - Add vcf output from several callers for medium-sized sample set

Issue - State: closed - Opened by percyfal over 7 years ago

#6 - Add version updates to history

Issue - State: closed - Opened by percyfal over 7 years ago

#5 - Don't download yuge by default; defer to script

Issue - State: closed - Opened by percyfal over 7 years ago

#3 - Feature/exclude yuge

Pull Request - State: closed - Opened by percyfal over 7 years ago

#2 - Update documentation for 0.2.0 features

Issue - State: closed - Opened by percyfal over 7 years ago - 1 comment