percyfal/pytest-ngsfixtures issues and pull requests

#65 - Replace variables called 'async' with Python 3.7 friendly 'async_'

Pull Request - State: open - Opened by kpj over 5 years ago

#64 - Ensure p argument is a LocalPath

Issue - State: open - Opened by percyfal about 6 years ago

#63 - Add generic function to setup fixture data

Issue - State: closed - Opened by percyfal over 6 years ago

#62 - Use request in addition to pytest.mark to ease parametrization

Issue - State: closed - Opened by percyfal over 6 years ago - 2 comments

#61 - Correct layout for multi-run sample

Issue - State: closed - Opened by percyfal over 6 years ago

#60 - Add travis staging script

Issue - State: open - Opened by percyfal over 6 years ago

#59 - Update busybox images for tests

Issue - State: closed - Opened by percyfal over 6 years ago

#58 - Fix failing test

Issue - State: closed - Opened by percyfal over 6 years ago - 1 comment

#57 - Implement sample layout configuration

Issue - State: closed - Opened by percyfal over 6 years ago - 1 comment

#56 - Simplify runfmt_alias function

Issue - State: closed - Opened by percyfal over 6 years ago - 1 comment
Labels: invalid

#55 - Add small and medium to downloadable data sets

Issue - State: closed - Opened by percyfal over 6 years ago
Labels: invalid

#54 - Separate most of data from code

Issue - State: closed - Opened by percyfal almost 7 years ago

#53 - Specific RNA-Seq data set needed

Issue - State: closed - Opened by percyfal almost 7 years ago - 1 comment
Labels: invalid, pytest-data

#52 - Make docker imports conditional or make docker-py a requirement

Issue - State: closed - Opened by percyfal almost 7 years ago

#51 - Allow modification of path variable in shell wrapper

Issue - State: closed - Opened by percyfal almost 7 years ago

#50 - Install docker-py from conda

Issue - State: closed - Opened by percyfal almost 7 years ago

#49 - Add wrapper and examples for nextflow

Issue - State: open - Opened by percyfal almost 7 years ago

#48 - Add helper modules for workflow managers and schedulers

Issue - State: closed - Opened by percyfal almost 7 years ago - 1 comment

#47 - Enable only setting up sampleinfo in setup_sample_layout

Issue - State: closed - Opened by percyfal almost 7 years ago

#46 - Add tutorial and examples on setting up a workflow test

Issue - State: closed - Opened by percyfal almost 7 years ago

#45 - Layout function sets up wrong name on read 2 if alias required

Issue - State: closed - Opened by percyfal almost 7 years ago

#44 - Census should not be increased for second read in read pair

Issue - State: closed - Opened by percyfal almost 7 years ago

#43 - Add function to return runfmt and alias pair

Issue - State: closed - Opened by percyfal almost 7 years ago

#42 - alias is set two times, both in ReadFixtureFile and FixtureFile

Issue - State: closed - Opened by percyfal almost 7 years ago

#41 - Make sure ngs_layout and ngs_runfmt are lists

Issue - State: closed - Opened by percyfal almost 7 years ago

#40 - Update layout configurations for project labels

Issue - State: closed - Opened by percyfal almost 7 years ago

#39 - sampleinfo fastq output does not correspond with alias info

Issue - State: closed - Opened by percyfal almost 7 years ago