peptideforest/peptideForest issues and pull requests

#46 - Add exmaple files

Pull Request - State: closed - Opened by fu 3 months ago

#45 - Update pytest requirement from <8.1.0,>=6.2.5 to >=6.2.5,<8.2.0

Pull Request - State: open - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#44 - update requirements, black

Pull Request - State: closed - Opened by tristan-ranff 11 months ago

#43 - Update pytest requirement from <7.5.0,>=6.2.5 to >=6.2.5,<8.1.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#42 - Update pandas requirement from <2.2.0,>=1.3.5 to >=1.3.5,<2.3.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#41 - Update scikit-learn requirement from <1.4,>=1.2 to >=1.2,<1.5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#40 - Update xgboost requirement from <1.7.0,>=1.5.0 to >=1.5.0,<2.1.0

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#39 - Sampling Targets

Pull Request - State: closed - Opened by tim-hudelmaier about 1 year ago

#38 - Update numpy requirement from <1.26.0,>=1.21.5 to >=1.21.5,<1.27.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#37 - Update pandas requirement from <2.1.0,>=1.3.5 to >=1.3.5,<2.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#36 - Update tqdm requirement from <4.66.0,>=4.62.3 to >=4.62.3,<4.67.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#35 - Add xgboost and fine-tuning capabilities

Pull Request - State: closed - Opened by tim-hudelmaier over 1 year ago

#34 - Update scikit-learn requirement from ~=1.2.0 to >=1.2,<1.4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#33 - constant and ordered feature cols

Pull Request - State: closed - Opened by tim-hudelmaier over 1 year ago

#32 - Update pytest requirement from <7.4.0,>=6.2.5 to >=6.2.5,<7.5.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#31 - Update numpy requirement from <1.25.0,>=1.21.5 to >=1.21.5,<1.26.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#30 - chore: remove redundant filling of delta empty delta columns, already…

Pull Request - State: closed - Opened by tim-hudelmaier over 1 year ago - 1 comment

#29 - workaround for change in pandas 2.0.0

Pull Request - State: closed - Opened by tristan-ranff almost 2 years ago

#28 - Update pytest requirement from <7.3.0,>=6.2.5 to >=6.2.5,<7.4.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#27 - Update loguru requirement from <0.7.0,>=0.5.3 to >=0.5.3,<0.8.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#26 - Update pandas requirement from <1.6.0,>=1.3.5 to >=1.3.5,<2.1.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#25 - Update uparma requirement from ~=0.9.14 to >=0.9.14,<1.1.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#24 - Add `raw_data_location` to check_mass_sanity groupby

Pull Request - State: closed - Opened by MKoesters almost 2 years ago

#23 - black

Pull Request - State: closed - Opened by tristan-ranff almost 2 years ago

#22 - Fix/pyiohat rename

Pull Request - State: closed - Opened by tristan-ranff almost 2 years ago

#21 - Update tqdm requirement from <4.65.0,>=4.62.3 to >=4.62.3,<4.66.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#20 - update dev

Pull Request - State: closed - Opened by tristan-ranff about 2 years ago

#19 - add cd and update ci

Pull Request - State: closed - Opened by tristan-ranff about 2 years ago

#18 - include 3.11 in ci

Pull Request - State: closed - Opened by tristan-ranff about 2 years ago

#17 - remove legacy files

Pull Request - State: closed - Opened by tristan-ranff about 2 years ago

#16 - Update loguru requirement from ~=0.5.3 to >=0.5.3,<0.7.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#15 - Update numpy requirement from ~=1.21.5 to >=1.21.5,<1.25.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#14 - Update pandas requirement from ~=1.3.5 to >=1.3.5,<1.6.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#13 - Update pytest requirement from ~=6.2.5 to >=6.2.5,<7.3.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#12 - Update tqdm requirement from ~=4.62.3 to >=4.62.3,<4.65.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#11 - update_package_config

Pull Request - State: closed - Opened by tristan-ranff about 2 years ago

#10 - Create dependabot.yml

Pull Request - State: closed - Opened by tristan-ranff about 2 years ago

#9 - Update requirements.txt

Pull Request - State: closed - Opened by tristan-ranff about 2 years ago

#8 - removed deprecated indexing by set

Pull Request - State: closed - Opened by tristan-ranff over 2 years ago

#7 - change column names to snake_case

Pull Request - State: closed - Opened by MKoesters almost 3 years ago

#6 - improved setup and cleaned up analysis scripts

Pull Request - State: closed - Opened by tristan-ranff almost 3 years ago

#5 - Working ursgal2 compatible version of peptide forest

Pull Request - State: closed - Opened by tristan-ranff about 3 years ago

#4 - mass sanity check

Pull Request - State: closed - Opened by tristan-ranff over 3 years ago

#3 - Allow any enzyme

Pull Request - State: closed - Opened by StSchulze over 4 years ago

#2 - Local interpretation

Pull Request - State: closed - Opened by fu almost 5 years ago

#1 - set file locations based on current file

Pull Request - State: closed - Opened by StSchulze almost 5 years ago

GitHub / peptideforest/peptideForest issues and pull requests