pdxgx/neoepiscope issues and pull requests

#18 - Support substitutions longer than 1

Issue - State: open - Opened by ThijsMaas almost 4 years ago

#17 - Updated unit tests and transcript class for germline/somatic/rna overlapping options

Pull Request - State: closed - Opened by ericjiyun03 almost 4 years ago

#16 - Eric's latest code updates for RNA editing

Pull Request - State: closed - Opened by ericjiyun03 almost 4 years ago - 1 comment

#15 - Error when running Neoepiscope

Issue - State: closed - Opened by leldershaw over 4 years ago - 2 comments

#14 - Possible to upgrade to latest numpy?

Issue - State: closed - Opened by jwhite007 almost 5 years ago - 3 comments

#13 - "-g" in prep? exists in README.md, but not usage message

Issue - State: closed - Opened by jfass almost 5 years ago - 2 comments

#12 - running for a long time; output stopped in the middle of a warning

Issue - State: open - Opened by jfass almost 5 years ago - 12 comments

#11 - incomplete warning message

Issue - State: closed - Opened by jfass almost 5 years ago - 1 comment

#10 - Fix loading of info transcripts for custom reference builds

Pull Request - State: closed - Opened by ThijsMaas about 5 years ago

#9 - transcript_to_gene_info.pickle is not loaded

Issue - State: closed - Opened by ThijsMaas about 5 years ago - 1 comment

#8 - Fixed uninitialized call of variable field if VAF is None

Pull Request - State: closed - Opened by jafors over 5 years ago - 1 comment

#7 - fail to include germline variant information

Issue - State: open - Opened by alex84425 over 5 years ago - 13 comments

#6 - Prioritizing neoepitopes

Issue - State: open - Opened by tarini92 almost 6 years ago - 2 comments

#5 - No neoepitopes found.

Issue - State: closed - Opened by tarini92 almost 6 years ago - 7 comments

#4 - Integrating HapCUT2

Issue - State: closed - Opened by tarini92 almost 6 years ago - 2 comments

Ecosyste.ms: Issues

GitHub / pdxgx/neoepiscope issues and pull requests