pbs-assess/gfplot issues and pull requests

#76 - rgeos package is obsolete and not supported for new versions of R

Issue - State: open - Opened by cgrandin 7 months ago - 1 comment

#75 - glmmTMB has changed where the family information is stored in the model structure

Issue - State: closed - Opened by ecophilina over 1 year ago

#74 - Add Schnute growth fun

Pull Request - State: open - Opened by quang-huynh over 1 year ago

#73 - Change to plot_ages() causes error

Issue - State: closed - Opened by cgrandin over 3 years ago - 3 comments

#72 - fit_survey_sets() not working after changes made to sdmTMB package

Issue - State: closed - Opened by cgrandin over 3 years ago

#71 - Add minimum convex polygon for COSEWIC

Issue - State: open - Opened by seananderson over 3 years ago

#70 - Switch to GitHub Actions CI

Issue - State: open - Opened by seananderson over 3 years ago

#69 - Remove old make_prediction_grid()

Issue - State: open - Opened by seananderson over 3 years ago

#68 - Let plot_survey_sets() work with just raw data

Issue - State: open - Opened by seananderson over 3 years ago

#67 - Pass link fn to fit_mat_ogive; closes #66

Pull Request - State: closed - Opened by quang-huynh almost 4 years ago

#66 - Pass link function to binomial GLM

Issue - State: closed - Opened by quang-huynh almost 4 years ago - 1 comment

#65 - Remove all functions now in gfdata

Issue - State: open - Opened by seananderson about 4 years ago

#64 - Remove all spatial modelling functions to avoid depending on INLA + sdmTMB

Issue - State: open - Opened by seananderson about 4 years ago

#63 - Building gfplot under R version 4.0.0.

Issue - State: closed - Opened by NormOlsen over 4 years ago - 5 comments

#61 - Add sampling start and end date-time for sensor data

Issue - State: closed - Opened by ecophilina over 5 years ago - 1 comment

#60 - installation error

Issue - State: closed - Opened by mkapur almost 6 years ago - 5 comments

#59 - Make as many of the IPHC functions as possible internal rather than exported

Issue - State: closed - Opened by seananderson almost 6 years ago - 2 comments

#58 - get_catch SQL error

Issue - State: closed - Opened by seananderson almost 6 years ago - 6 comments

#57 - Integrate sensor data retrieval into package

Issue - State: closed - Opened by seananderson almost 6 years ago - 1 comment

#56 - Export some functions that seem to be useful in other packages

Issue - State: open - Opened by seananderson almost 6 years ago

#55 - Hide some functions from the end user that should probably be internal

Issue - State: closed - Opened by seananderson almost 6 years ago

#54 - Add unit testing for all major functions

Issue - State: open - Opened by seananderson almost 6 years ago

#53 - Double check effective skate numbers for 1995

Issue - State: closed - Opened by andrew-edwards about 6 years ago - 3 comments

#50 - Sean to fetch new branch (but not quite yet)

Issue - State: closed - Opened by andrew-edwards about 6 years ago - 2 comments

#47 - Delete spp-of-interest.csv in gfplot since there's now a large one in gfsynopsis?

Issue - State: closed - Opened by andrew-edwards about 6 years ago - 2 comments
Labels: future

#46 - Andy to do before merging iphc-funcs branch into master

Issue - State: closed - Opened by andrew-edwards about 6 years ago

#44 - Un-hardwire num_sets in format_iphc_longest().

Issue - State: closed - Opened by andrew-edwards about 6 years ago - 1 comment

#43 - Think we can fix Travis?

Issue - State: closed - Opened by andrew-edwards about 6 years ago - 2 comments

#42 - Add .dll files to .Rbuildignore?

Issue - State: closed - Opened by andrew-edwards about 6 years ago - 2 comments

#36 - If the skate-level results don't match those in YYR assessment then fix

Issue - State: closed - Opened by andrew-edwards about 6 years ago - 1 comment

#34 - One of the examples is not working (for me)

Issue - State: closed - Opened by andrew-edwards over 6 years ago - 4 comments

#33 - Axis labels plot_age_precision()

Issue - State: closed - Opened by robynforrest over 6 years ago - 2 comments

#32 - Surveys displayed in plot_ages()

Issue - State: closed - Opened by robynforrest over 6 years ago - 4 comments

#30 - All data extraction fails

Issue - State: closed - Opened by cgrandin over 6 years ago - 2 comments

#29 - Had to comment out ip check to make cache_pbs_data() work (utils.R)

Issue - State: closed - Opened by cgrandin over 6 years ago - 4 comments

#28 - Describe SQL queries in the working paper

Issue - State: closed - Opened by seananderson almost 7 years ago - 2 comments

#27 - Move synoptic map labels to the bottom left

Issue - State: closed - Opened by seananderson almost 7 years ago - 1 comment

#26 - Plot spatial PHMA + IPHC surveys for last year?

Issue - State: closed - Opened by seananderson almost 7 years ago - 1 comment

#25 - Try synoptic maps with consistent colour scheme

Issue - State: closed - Opened by seananderson almost 7 years ago

#24 - Add all years to age bubble plots (or every 2?)

Issue - State: closed - Opened by seananderson almost 7 years ago - 2 comments

#23 - Add extra grey block for catches 2007 and backwards (for H + L)

Issue - State: closed - Opened by seananderson almost 7 years ago - 1 comment

#22 - Plot trawl CPUE 1997-2011

Issue - State: closed - Opened by seananderson almost 7 years ago - 1 comment

#21 - Try random effects maturity model

Issue - State: closed - Opened by seananderson almost 7 years ago - 5 comments

#20 - usability codes in get survey biol

Issue - State: closed - Opened by elisekeppel almost 7 years ago

#19 - Add descriptive content at the top of each page

Issue - State: closed - Opened by seananderson almost 7 years ago

#18 - Assign maturity to samples

Issue - State: closed - Opened by seananderson almost 7 years ago

#17 - Include CPUE trend for recent years?

Issue - State: closed - Opened by seananderson almost 7 years ago - 3 comments

#16 - Plot ageing precision

Issue - State: closed - Opened by seananderson almost 7 years ago - 2 comments

#15 - Weight age proportions (bubbles) by strata density

Issue - State: closed - Opened by seananderson almost 7 years ago - 14 comments

#14 - Consider hook + line survey length/age frequencies if more data for it

Issue - State: closed - Opened by seananderson almost 7 years ago - 2 comments

#13 - Finish cleaning up functions into package

Issue - State: closed - Opened by seananderson almost 7 years ago - 1 comment
Labels: later

#12 - Substitute basic LaTeX template for CSAS template

Issue - State: closed - Opened by seananderson almost 7 years ago
Labels: later

#11 - Deal with the survey reliability issue

Issue - State: closed - Opened by seananderson almost 7 years ago

#10 - Add males, commercial unsorted, and 3 more surveys data to age + length bubble plots

Issue - State: closed - Opened by seananderson almost 7 years ago

#9 - Decide on robust regression vs. removing outliers for length-age, length-weight plots

Issue - State: closed - Opened by seananderson almost 7 years ago - 1 comment
Labels: later

#8 - Add commercial unsorted samples to length-age and length-weight plots/models

Issue - State: closed - Opened by seananderson almost 7 years ago - 1 comment

#7 - Try side-by-side histograms instead of Joy plots

Issue - State: closed - Opened by seananderson almost 7 years ago - 2 comments

#6 - Add hook and line (spatial) commercial CPUE plot

Issue - State: closed - Opened by seananderson almost 7 years ago - 1 comment

#5 - Modularize individual panel plots as much as possible

Issue - State: closed - Opened by seananderson almost 7 years ago
Labels: later

GitHub / pbs-assess/gfplot issues and pull requests