Ecosyste.ms: Issues

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GitHub / pbreheny/visreg issues and pull requests

#128 - visreg does not work for random forests with subset

Issue - State: open - Opened by pbreheny about 2 months ago

#127 - visreg is not ploting random effects with a mixed model

Issue - State: open - Opened by guilherme-pantanal 7 months ago - 2 comments

#126 - glmmTMB: plots should always be on response scale

Issue - State: open - Opened by pbreheny 7 months ago

#124 - Specifying the range of a plot

Issue - State: open - Opened by barryrowlingson 8 months ago - 3 comments

#122 - Partial residual plots and beta regression

Issue - State: closed - Opened by luroy 9 months ago - 2 comments

#120 - Doesn't seem to work with randomForestSRC

Issue - State: open - Opened by pbreheny 10 months ago

#119 - Convert to Roxygen

Issue - State: closed - Opened by pbreheny 10 months ago

#118 - Spacing of fit point should account for xtrans

Issue - State: closed - Opened by pbreheny 10 months ago

#117 - Remove visreg(fit) from documentation

Issue - State: open - Opened by pbreheny 10 months ago

#116 - Don't use aes_string() anymore

Issue - State: open - Opened by pbreheny 10 months ago

#115 - use merTools::predictionInterval

Issue - State: open - Opened by pbreheny 10 months ago

#114 - Adding points to visreg2d plot

Issue - State: closed - Opened by MarcoVuerich over 1 year ago - 1 comment

#113 - Bug in visregFactorPanel when partial = FALSE

Issue - State: open - Opened by raymondben over 1 year ago

#112 - visreg fails to run depending on where regression data comes from

Issue - State: closed - Opened by travis-leith over 1 year ago - 1 comment

#111 - Lack of confidence band in multinomial models

Issue - State: open - Opened by MarcRieraDominguez over 1 year ago

#109 - Color customization in the `plot.visreg2d` function

Issue - State: closed - Opened by AlexisZr over 1 year ago - 1 comment

#106 - nlme fails if there is an implicit conversion to factor

Issue - State: open - Opened by pbreheny almost 2 years ago
Labels: bug

#105 - shape-coded dots

Issue - State: closed - Opened by felixpleiva about 2 years ago - 2 comments

#104 - visreg ignores strip.names if gg=TRUE in an overlay=TRUE plot

Issue - State: closed - Opened by tbates about 2 years ago - 1 comment

#103 - zero inflated models

Issue - State: open - Opened by ndusit over 2 years ago

#102 - error in parse

Issue - State: closed - Opened by nath2801 almost 3 years ago - 2 comments

#101 - Wrong position of observations

Issue - State: closed - Opened by Marc-Girondot almost 3 years ago - 2 comments

#98 - Error with mgcv fitted gam

Issue - State: open - Opened by nilescbn over 3 years ago - 6 comments

#97 - visreg error with lme input: unused argument (formula = formula(fit))

Issue - State: closed - Opened by elslabbert over 3 years ago - 2 comments

#96 - visreg: plotting random effects from an lme model

Issue - State: open - Opened by pbreheny over 3 years ago
Labels: compatibility

#95 - visreg and quantreg

Issue - State: open - Opened by pbreheny over 3 years ago
Labels: compatibility

#94 - Incorporate plotly

Issue - State: open - Opened by pbreheny over 3 years ago
Labels: new feature

#93 - Refactor visreg2d

Issue - State: open - Opened by pbreheny over 3 years ago
Labels: refactor

#92 - Overhaul website

Issue - State: closed - Opened by pbreheny over 3 years ago - 1 comment
Labels: documentation

#91 - Issue with gamm4 not fixed by FAQ

Issue - State: closed - Opened by utooley almost 4 years ago - 3 comments
Labels: question

#90 - visreg+betareg

Issue - State: open - Opened by VitoMuggeo almost 4 years ago - 2 comments
Labels: enhancement

#89 - Introduce a vcov= argument to allow using sandwich covariance and calculate robust standard errors

Issue - State: open - Opened by kuiperjh almost 4 years ago - 4 comments
Labels: enhancement

#88 - visreg for gls regressions?

Issue - State: closed - Opened by bblonder almost 4 years ago - 3 comments

#87 - parseFormula.R does not correctly handle scaled interaction terms

Issue - State: open - Opened by Albert-Tate about 4 years ago
Labels: bug

#86 - Overlaying mixed effects model results from different models / dataframes

Issue - State: closed - Opened by mcgregorian1 over 4 years ago - 7 comments

#85 - strip.names not working correctly with ggplot

Issue - State: closed - Opened by manuSrep over 4 years ago - 1 comment

#84 - with plot.type = "Plot3D"?

Issue - State: closed - Opened by HaoLi111 almost 5 years ago - 3 comments

#83 - support for rms objects

Issue - State: closed - Opened by dylanbeaudette almost 5 years ago - 5 comments

#82 - Clean up code

Issue - State: closed - Opened by pbreheny almost 5 years ago

#81 - Arguments `xtrans` and `xlim` are incompatible

Issue - State: closed - Opened by dschlaep almost 5 years ago - 1 comment

#80 - Transformed predictors with lme4 mixed models

Issue - State: closed - Opened by GillesSanMartin almost 5 years ago - 2 comments

#79 - Specifying point shape and color

Issue - State: closed - Opened by zdiazmar about 5 years ago - 5 comments

#78 - Conditioning reported for contrast plot

Issue - State: closed - Opened by jwbenning about 5 years ago - 2 comments

#77 - Incompatible with MuMIn for mixed models

Issue - State: closed - Opened by pbreheny about 5 years ago

#76 - visreg fails with coxph when update() required

Issue - State: closed - Opened by pbreheny about 5 years ago

#75 - Back Transform Squareroot transformed data

Issue - State: closed - Opened by hjwood about 5 years ago - 1 comment

#74 - Data extraction by setupF() fails in certain case for lm() fits

Issue - State: closed - Opened by courtiol about 5 years ago - 6 comments

#73 - visreg2d for multinom?

Issue - State: open - Opened by kwhkim about 5 years ago
Labels: enhancement

#72 - Log transformed response in lmer not located

Issue - State: closed - Opened by aande763 over 5 years ago - 3 comments

#71 - Documentation about y-axis partial residuals for simple multiple regression

Issue - State: closed - Opened by utooley over 5 years ago - 1 comment
Labels: question

#70 - visreg3d() for 3D isosurface with library plot3d and plot3drgl ?

Issue - State: open - Opened by HaoLi111 over 5 years ago
Labels: new feature

#69 - setting factor to centre on 0 for contrast plots

Issue - State: closed - Opened by Maschette over 5 years ago - 1 comment

#68 - Option to pass data/variables

Issue - State: closed - Opened by pbreheny almost 6 years ago - 1 comment

#67 - Error plotting glmmTMB model with weights argument

Issue - State: closed - Opened by erinsauer almost 6 years ago - 15 comments

#65 - Why do I get a warning when specifying re.form?

Issue - State: closed - Opened by pbreheny almost 6 years ago - 1 comment

#64 - predict.coxph cannot find data if an update is necessary

Issue - State: closed - Opened by pbreheny about 6 years ago

#63 - Incorrect/unnecessary warning about interactions

Issue - State: open - Opened by pbreheny about 6 years ago
Labels: bug

#62 - Allow 'by' argument to be a vector

Issue - State: open - Opened by pbreheny about 6 years ago
Labels: new feature

#61 - support for models fit without formula objects

Issue - State: open - Opened by brooksambrose over 6 years ago - 1 comment
Labels: new feature

#60 - Errors when plot size and margins reduced

Issue - State: closed - Opened by Derek-Jones over 6 years ago - 5 comments

#59 - xlab="Stuff\n" vs. xlab="\nStuff"

Issue - State: closed - Opened by Derek-Jones over 6 years ago - 10 comments

#58 - plot.type="persp", plot=FALSE: image plotted

Issue - State: closed - Opened by Derek-Jones over 6 years ago - 8 comments

#57 - partial residuals based on deviance residuals

Issue - State: closed - Opened by robjhyndman over 6 years ago - 1 comment

#56 - color points by group

Issue - State: closed - Opened by DemaLM over 6 years ago - 5 comments

#54 - Error when lme4 model contains offset

Issue - State: closed - Opened by pbreheny over 6 years ago

#53 - Override ggplot options

Issue - State: closed - Opened by jvcasillas over 6 years ago - 1 comment

#52 - end of input error with extra () when using poly

Issue - State: closed - Opened by jebyrnes over 6 years ago - 3 comments
Labels: bug

#51 - Partial residuals on wrong scale with Tweedie distribution in mgcv

Issue - State: open - Opened by lukembrowne over 6 years ago - 4 comments
Labels: enhancement

#50 - [conditional plots] Plot fitted line on top of residuals

Issue - State: closed - Opened by vspinu over 6 years ago - 3 comments

#49 - Document differences with `effects`, `termplot`, `car::xyzPlots` etc

Issue - State: open - Opened by vspinu over 6 years ago
Labels: documentation

#48 - Option to plot on transformed scale

Issue - State: closed - Opened by vspinu over 6 years ago - 7 comments

#47 - Why `y~y` plot is there?

Issue - State: closed - Opened by vspinu over 6 years ago - 4 comments

#46 - gg=TRUE does not work without variable specification

Issue - State: closed - Opened by jebyrnes over 6 years ago - 5 comments

#45 - 2.5% confidence limit for the X2 distribution

Issue - State: closed - Opened by xphab almost 7 years ago - 2 comments

#44 - Obscure error message for intercept-only models

Issue - State: closed - Opened by pbreheny almost 7 years ago - 1 comment

#43 - Change the transparency of the confidence band

Issue - State: closed - Opened by ManuelSpinola almost 7 years ago - 3 comments

#42 - Multiple visreg2d plots

Issue - State: closed - Opened by pbreheny almost 7 years ago - 1 comment

#41 - Stratified Cox models

Issue - State: closed - Opened by pbreheny almost 7 years ago

#40 - MCMCglmm

Issue - State: closed - Opened by ghost almost 7 years ago - 1 comment

#39 - overlay doesn't work for gg output

Issue - State: closed - Opened by pbreheny almost 7 years ago

#38 - Changing y limits on y-axis when gg=T

Issue - State: closed - Opened by makresh about 7 years ago - 2 comments

#37 - Add gg option to visreg2d?

Issue - State: closed - Opened by grasshoppermouse over 7 years ago - 3 comments
Labels: enhancement

#36 - Confidence interval tends to zero in quasi-parabolic contrast plots

Issue - State: closed - Opened by DanielReedOcean over 7 years ago - 2 comments

#35 - betareg

Issue - State: closed - Opened by denisroy1 over 7 years ago - 5 comments

#34 - custom font size

Issue - State: closed - Opened by pertor over 7 years ago - 1 comment

#33 - added handling of custom reference for the X variable in the contrast plot

Pull Request - State: closed - Opened by jealie over 7 years ago

#32 - Allow a custom X reference for the contrast plot

Issue - State: closed - Opened by jealie over 7 years ago - 1 comment

#31 - xtrans argument

Issue - State: closed - Opened by ecologist1234 over 7 years ago - 1 comment

#30 - Specifying ggplot options

Issue - State: closed - Opened by pbreheny over 7 years ago - 2 comments

#29 - Plotting a model that uses a smoother with knots specified by a variable

Issue - State: closed - Opened by DanielReedOcean almost 8 years ago - 1 comment

#28 - working paper: "effects" package and partial residuals

Issue - State: closed - Opened by rdiaz02 almost 8 years ago - 1 comment

#27 - definition of partial residuals for GLMs

Issue - State: closed - Opened by rdiaz02 almost 8 years ago - 3 comments

#26 - Overlay plot on other visreg

Issue - State: closed - Opened by sluijs almost 8 years ago - 1 comment
Labels: enhancement

#25 - When used with gamm4, error in eval: object not found (v. 2.3-0)

Issue - State: closed - Opened by klabarb about 8 years ago - 4 comments

#24 - Interaction plots introduce extrapolation

Issue - State: open - Opened by pbreheny about 8 years ago - 1 comment
Labels: enhancement