Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / pblumenkamp/Curare issues and pull requests

#71 - Update to 0.6.0

Pull Request - State: closed - Opened by pblumenkamp 11 months ago

#70 - add EdgeR module

Pull Request - State: closed - Opened by pblumenkamp 11 months ago

#69 - Wizard

Pull Request - State: closed - Opened by pblumenkamp 12 months ago

#68 - Update development to current master

Pull Request - State: closed - Opened by pblumenkamp 12 months ago

#67 - file structure and html adjustments

Pull Request - State: closed - Opened by PfisterMaxJLU over 1 year ago

#66 - minimap2 augmented with flagstat stats

Pull Request - State: closed - Opened by PfisterMaxJLU over 1 year ago

#65 - added minimap2 mapper

Pull Request - State: closed - Opened by PfisterMaxJLU over 1 year ago

#64 - add bwa-mem2

Pull Request - State: closed - Opened by sjaenick over 1 year ago

#63 - Update README and conda envs

Pull Request - State: closed - Opened by sjaenick over 1 year ago

#62 - Update development to current master

Pull Request - State: closed - Opened by pblumenkamp over 2 years ago

#60 - typo fix: s/catergory/category/

Pull Request - State: closed - Opened by sjaenick over 2 years ago

#59 - fix typo in README

Pull Request - State: closed - Opened by sjaenick almost 3 years ago

#58 - Development - Update to 0.3.1

Pull Request - State: closed - Opened by pblumenkamp over 3 years ago

#57 - Kallisto

Issue - State: open - Opened by pblumenkamp over 3 years ago - 1 comment

#56 - Support 3rd gen and long reads

Issue - State: closed - Opened by pblumenkamp over 3 years ago - 1 comment

#55 - WIP: initial github action file; added simplest test

Pull Request - State: closed - Opened by r-mllr over 4 years ago
Labels: enhancement, conda

#54 - parallelization of featureCounts with option to omit features

Pull Request - State: closed - Opened by r-mllr over 4 years ago - 1 comment

#49 - Segemehl module - [merged]

Issue - State: closed - Opened by pblumenkamp over 4 years ago

#48 - Conda integration - [merged]

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 1 comment
Labels: gitlab merge request

#47 - Wizard

Pull Request - State: closed - Opened by pblumenkamp over 4 years ago

#44 - Development

Pull Request - State: closed - Opened by pblumenkamp over 4 years ago

#39 - Add Bowtie2 to MultiQC

Issue - State: open - Opened by pblumenkamp over 4 years ago
Labels: feature

#38 - Rename Repository

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 3 comments

#37 - FASTP

Issue - State: closed - Opened by pblumenkamp over 4 years ago
Labels: feature, module

#36 - URMAP

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 1 comment
Labels: feature, module

#35 - tests/resources/run.sh falscher Zugriff auf Array [REPLACEMENT ISSUE]

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 2 comments

#34 - Typo: Ressources [REPLACEMENT ISSUE]

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 2 comments

#33 - DESeq2 summary table

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 7 comments
Labels: feature, r

#32 - YAML loader is deprecated [REPLACEMENT ISSUE]

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 1 comment

#30 - Sample name must not end with '_unmapped.bam' [REPLACEMENT ISSUE]

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 2 comments

#29 - STAR

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 1 comment
Labels: feature, module

#28 - bwa

Issue - State: open - Opened by pblumenkamp over 4 years ago - 4 comments
Labels: feature, module

#27 - Restart only necessary rules after config changes

Issue - State: closed - Opened by pblumenkamp over 4 years ago
Labels: feature, module

#26 - [DESeq2] Empty first page in correlation heat map [REPLACEMENT ISSUE]

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 3 comments

#25 - [DESeq2] Changing colors in featCount assignment plot [REPLACEMENT ISSUE]

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 4 comments

#24 - Sammlung aller Bowtie2 stats

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 3 comments
Labels: feature

#22 - Werden die ungemappten reads weggeschmissen? [REPLACEMENT ISSUE]

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 2 comments

#21 - Check if all user files exist

Issue - State: closed - Opened by pblumenkamp over 4 years ago

#20 - bowtie2-build multiple chromosomes + index name

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 2 comments

#19 - unzip module [REPLACEMENT ISSUE]

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 3 comments

#18 - version control

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 1 comment
Labels: feature

#17 - clean up ReadXplorer files

Issue - State: closed - Opened by pblumenkamp over 4 years ago
Labels: bug

#16 - ReadXplorer db path

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 1 comment
Labels: bug

#15 - Bowtie2 settings

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 1 comment
Labels: feature

#14 - Default value for optional settings

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 1 comment
Labels: feature

#13 - DESeq2

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 2 comments
Labels: module

#12 - module attachements

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 2 comments
Labels: feature

#11 - Bug or Feature: Screaming Files [REPLACEMENT ISSUE]

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 14 comments

#9 - CI/CD

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 2 comments
Labels: feature

#8 - DESeq2 normalized count table

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 2 comments
Labels: feature, r

#7 - R-dump

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 2 comments
Labels: feature, r

#6 - Conda install package

Issue - State: closed - Opened by pblumenkamp over 4 years ago
Labels: conda, feature

#5 - Requirements

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 13 comments
Labels: conda, feature

#3 - FastQC/MultiQC

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 3 comments
Labels: feature, module

#2 - config file

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 2 comments
Labels: feature

#1 - add ReadXplorer rule [REPLACEMENT ISSUE]

Issue - State: closed - Opened by pblumenkamp over 4 years ago - 6 comments