pblischak/HyDe issues and pull requests

#43 - Curious About Gene Flow Direction in Hybrid Detection Results of HyDe

Issue - State: open - Opened by Jhe1004 5 months ago - 1 comment

#42 - Question about Gamma

Issue - State: open - Opened by Wennie-s 12 months ago

#41 - Interpretation of bootstrap results

Issue - State: open - Opened by pmomadeira about 1 year ago - 1 comment

#40 - how to determine the hybrid species in the result of exhaustive search

Issue - State: open - Opened by bettermaan over 1 year ago - 1 comment

#39 - the significant results means tested species is a hybrid or just have gene flow?

Issue - State: open - Opened by CrawlingSponge over 1 year ago - 4 comments

#38 - Question about the

Issue - State: open - Opened by Orz-CQ over 1 year ago - 9 comments

#37 - why my results gamma were nan and the AAAA AAAB ......were 0.0？

Issue - State: open - Opened by yuanjigui over 1 year ago - 3 comments

#36 - Why my gamma were nan ？

Issue - State: closed - Opened by yuanjigui over 1 year ago - 1 comment

#35 - WHY

Issue - State: closed - Opened by yuanjigui over 1 year ago - 4 comments

#34 - please，what function these ？Does it affect the results？

Issue - State: closed - Opened by yuanjigui over 1 year ago - 3 comments

#33 - run_hyde.py -i data.txt -m map.txt -o out -n 16 -t 4 -s 50000

Issue - State: closed - Opened by yuanjigui over 1 year ago - 1 comment

#32 - fixed indexing typo (#23)

Pull Request - State: closed - Opened by pblischak over 1 year ago

#31 - Revisit package requirements and build instructions

Issue - State: open - Opened by pblischak over 1 year ago
Labels: enhancement

#30 - Unable to understand the result

Issue - State: closed - Opened by tanwei123456 over 1 year ago - 3 comments

#29 - Installation of HyDe : problem in make test

Issue - State: open - Opened by snehasjoshi over 1 year ago - 2 comments

#28 - fileSegmentation fault (core dumping)

Issue - State: open - Opened by gyq-123 almost 2 years ago - 1 comment

#27 - Different order of map.txt generate different results

Issue - State: closed - Opened by zhangzhiyangcs about 2 years ago - 3 comments

#26 - Segmentation fault -- empty lines error

Issue - State: open - Opened by cblair81 about 2 years ago - 1 comment
Labels: bug

#25 - Does HyDe could identify Degenerte Nucleotide Codes?

Issue - State: closed - Opened by zhangzhiyangcs over 2 years ago - 2 comments

#24 - Segmentation fault (unknown reason)

Issue - State: closed - Opened by bmichanderson almost 3 years ago - 2 comments

#23 - Possible typo?

Issue - State: closed - Opened by bmichanderson almost 3 years ago - 2 comments

#22 - Can SNP data of only mutation sites be used as input data

Issue - State: open - Opened by syauwjl about 3 years ago - 1 comment

#21 - segmentation fault

Issue - State: closed - Opened by rakeuler over 3 years ago - 6 comments

#20 - "number of sites specified is not equal to number of sites in data file"

Issue - State: closed - Opened by rakeuler over 3 years ago - 1 comment

#19 - confused results of gamma

Issue - State: open - Opened by sandyplus over 3 years ago - 1 comment

#18 - Input need to filter minor allele frequence SNP?

Issue - State: open - Opened by sandyplus over 3 years ago - 1 comment

#17 - Gamma values > 1.0 and negative Z scores

Issue - State: open - Opened by burbrink over 3 years ago - 2 comments

#16 - About the introgression detect using hyde

Issue - State: closed - Opened by Jhe1004 over 3 years ago - 3 comments

#15 - How should I convert VCF to Phylip format?

Issue - State: closed - Opened by silvewheat about 4 years ago - 4 comments

#14 - HyDe is installed while make test does not worked

Issue - State: open - Opened by Yung-Chien about 4 years ago - 3 comments

#13 - Phased data

Issue - State: open - Opened by kyleaoconnell22 over 4 years ago - 5 comments

#12 - issue running setup.py install

Issue - State: closed - Opened by angelajmcd about 5 years ago - 3 comments

#11 - Graphical User Interface Beta Testers

Issue - State: open - Opened by pblischak about 5 years ago - 1 comment
Labels: enhancement

#10 - docstring of run_hyde.py

Issue - State: closed - Opened by hannesbecher about 5 years ago - 2 comments

#9 - KeyError regarding outgroup

Issue - State: closed - Opened by ClaudiaPaetzold over 5 years ago - 4 comments

#8 - OverflowError: value too large to convert to int

Issue - State: open - Opened by ethering over 5 years ago - 2 comments

#7 - Installation error - seaborn missing

Issue - State: closed - Opened by ethering over 5 years ago - 3 comments

#6 - HyDe is installed but the test does not work

Issue - State: closed - Opened by arturomarin almost 6 years ago - 7 comments

#5 - Segmentation fault

Issue - State: closed - Opened by RSchley about 6 years ago - 4 comments

#4 - Exception KeyError

Issue - State: closed - Opened by stsmall over 6 years ago - 3 comments

#3 - Not all triples evaluated

Issue - State: closed - Opened by SheaML about 7 years ago - 2 comments

#2 - file path handling

Issue - State: closed - Opened by pblischak about 7 years ago - 1 comment

#1 - Installation error

Issue - State: closed - Opened by SheaML about 7 years ago - 4 comments

GitHub / pblischak/HyDe issues and pull requests