paul-buerkner/brms issues and pull requests

#1669 - post-hoc test for multinomial logistic regression brm model (categorical responce)

Issue - State: closed - Opened by LeoJha 6 days ago - 1 comment

#1668 - misleading wording in multivariate model vignette?

Issue - State: open - Opened by soskuthy 8 days ago
Labels: documentation

#1667 - Error in x$terms

Issue - State: closed - Opened by JCruk 9 days ago - 3 comments

#1666 - Error in fcor() for nonlinear model

Issue - State: open - Opened by abstrathe 18 days ago
Labels: bug

#1665 - More documentation for loo(reloo_args)

Issue - State: open - Opened by ASKurz 21 days ago
Labels: documentation

#1664 - Code for threaded categorical outcome models does not work

Issue - State: closed - Opened by chrishanretty about 1 month ago - 4 comments
Labels: bug

#1663 - Fix creating stanfit from csv when rstan not loaded

Pull Request - State: closed - Opened by andrjohns about 1 month ago - 1 comment

#1662 - Use draws from pathfinder posterior as inits

Issue - State: open - Opened by StaffanBetner about 1 month ago - 1 comment
Labels: feature

#1661 - remove importMethodsFrom rstan summary

Pull Request - State: closed - Opened by venpopov about 1 month ago - 1 comment

#1660 - Potential breaking change for brms 3.0: no special treatment for mu

Issue - State: open - Opened by venpopov about 1 month ago
Labels: feature

#1659 - feature request: mixtures over groups / participants

Issue - State: open - Opened by pmusfeld about 1 month ago
Labels: feature

#1658 - brms::log_lik creating zombies if cmdstanr is loaded

Issue - State: closed - Opened by avehtari about 2 months ago - 13 comments
Labels: bug

#1657 - feature request: alternative approach for censored data

Issue - State: open - Opened by hansvancalster about 2 months ago - 1 comment
Labels: feature

#1656 - car example uses deprecated formula

Issue - State: open - Opened by avehtari about 2 months ago
Labels: documentation

#1655 - R2D2 does not account for scale of the data

Issue - State: open - Opened by n-kall about 2 months ago - 3 comments
Labels: feature, documentation

#1654 - Possible bug in brms/emmeans integration

Issue - State: open - Opened by wlandau about 2 months ago - 6 comments

#1653 - Implement the brmsframe layer

Pull Request - State: closed - Opened by paul-buerkner about 2 months ago

#1652 - Incomplete info in documentation regarding the combinations for `<group>=NA` and `re_formula=NULL`

Issue - State: open - Opened by mattansb about 2 months ago - 3 comments
Labels: documentation

#1651 - Random effects on thresholds in cumulative models are added to the model twice

Issue - State: closed - Opened by singmann 2 months ago - 3 comments
Labels: bug

#1650 - Error thrown with variational algorithms

Issue - State: closed - Opened by marcus-waldman 2 months ago - 6 comments
Labels: bug

#1649 - autoselect type for pp_check with group argument

Issue - State: open - Opened by venpopov 3 months ago - 1 comment
Labels: feature

#1648 - Error: Internal renaming led to duplicated names

Issue - State: open - Opened by bhara033 3 months ago - 7 comments

#1647 - Dynamic Panel Ordered Probit Model

Issue - State: open - Opened by DjakissO 3 months ago

#1646 - Prototype for set_inits()

Pull Request - State: open - Opened by venpopov 3 months ago - 8 comments
Labels: feature

#1645 - thoughts about a set_inits() or gen_inits() function?

Issue - State: open - Opened by venpopov 3 months ago - 3 comments
Labels: feature

#1644 - Bug when y ~ 0 + Intercept & family = 'poisson' & sample_prior = 'yes'

Issue - State: open - Opened by bfordAIMS 3 months ago
Labels: bug

#1643 - add loo_epred

Pull Request - State: closed - Opened by avehtari 3 months ago - 9 comments
Labels: feature

#1642 - Use of weights with cox() family

Issue - State: open - Opened by cccnrc 3 months ago
Labels: bug

#1641 - Add loo_epred

Issue - State: closed - Opened by avehtari 3 months ago - 2 comments
Labels: feature

#1640 - Savage-Dickey density ratios aren't computed with QR decomposition

Issue - State: closed - Opened by josh-fiechter 3 months ago - 1 comment

#1639 - Fix p limits for some q* distribution functions; fix qgen_extreme_value

Pull Request - State: closed - Opened by venpopov 3 months ago - 1 comment

#1638 - The centred intercept `Intercept` is exported

Issue - State: closed - Opened by stefanocoretta 3 months ago - 4 comments

#1637 - "Error: 'p' must contain probabilities in (0,1)" in qstudent_t(1, df = 3), qskew_normal and a few others

Issue - State: closed - Opened by venpopov 3 months ago - 2 comments
Labels: feature

#1636 - Got unrecoverable error when trying to fit a model with only intercept

Issue - State: closed - Opened by chenshuai416 3 months ago - 4 comments

#1635 - Use certain internal brms functions in non-linear formulas

Issue - State: open - Opened by dbarneche 3 months ago - 11 comments
Labels: feature

#1634 - cannot use tan_half link in custom family

Issue - State: open - Opened by venpopov 3 months ago - 1 comment
Labels: bug

#1633 - use von_mises_lpdf directly instead of von_mises2_lpdf after next stan update

Issue - State: open - Opened by venpopov 3 months ago

#1632 - change default prior for von_mises mu tan_half link

Pull Request - State: closed - Opened by venpopov 3 months ago - 2 comments

#1631 - default prior for mu in von_mises with tan_half link

Issue - State: closed - Opened by venpopov 3 months ago - 1 comment

#1630 - brms/emmeans integration with nuisance variables

Issue - State: closed - Opened by wlandau 4 months ago - 2 comments

#1629 - Document equivalence of re_formula = NA and re_formula = ~0 in predict methods

Issue - State: open - Opened by wpetry 4 months ago
Labels: documentation

#1628 - non-linear functions are forced to be in the global scope

Issue - State: closed - Opened by wds15 4 months ago - 3 comments

#1627 - posterior_predict for truncated 'skew_normal' returns NA

Issue - State: closed - Opened by avehtari 4 months ago - 1 comment

#1626 - Extra intercept when fitting nonlinear cumulative logit model with brm and bf

Issue - State: closed - Opened by ksuresh17 4 months ago - 1 comment

#1625 - A more informative message when brmsfit contains only warmup samples

Issue - State: closed - Opened by venpopov 4 months ago - 1 comment

#1624 - update doc and loo recommendations

Pull Request - State: closed - Opened by avehtari 4 months ago - 2 comments

#1623 - Allow read_csv_as_stanfit to work when inv_metric is not recorded

Pull Request - State: closed - Opened by venpopov 4 months ago - 2 comments

#1622 - Interval censoring fails due to differing dimensions of resp_cens arguments

Issue - State: closed - Opened by StaffanBetner 4 months ago - 2 comments
Labels: bug

#1621 - Syntax Error still not fixed with latest BRMS from GitHub

Issue - State: closed - Opened by rogerzzz123 4 months ago - 1 comment

#1620 - Unexpected results of `emtrends()` with meausurement error model

Issue - State: closed - Opened by kthayashi 4 months ago - 2 comments

#1619 - Read csv as stanfit v2 (alternative version)

Pull Request - State: closed - Opened by venpopov 4 months ago - 3 comments

#1618 - Abstract function for reading cmdstanr csv output into a fit object for brms and export it

Pull Request - State: closed - Opened by venpopov 4 months ago - 1 comment

#1617 - abstract function for reading cmdstanr csv output into a fit object for brms and export it

Issue - State: closed - Opened by venpopov 4 months ago - 4 comments

#1616 - gam contrainted to pass through fixed value - add argument paraPen?

Issue - State: closed - Opened by beckyfisher 4 months ago - 1 comment

#1615 - make restructure an S3 method

Pull Request - State: closed - Opened by venpopov 4 months ago - 1 comment

#1614 - A better default prior for shape parameter of negative binomial

Issue - State: closed - Opened by avehtari 4 months ago - 9 comments
Labels: feature, priors

#1613 - Within-chain parallelization in Ubuntu (WSL) not working.

Issue - State: closed - Opened by qymera0 4 months ago - 2 comments

#1612 - Syntax error when adding a Gaussian Process term with cmdstanr

Issue - State: closed - Opened by FredericBlum 4 months ago - 4 comments

#1611 - make restructure() also into a generic method?

Issue - State: closed - Opened by venpopov 4 months ago - 3 comments

#1610 - Expose keep_mu option to users to make mu explicit in code and summary

Pull Request - State: closed - Opened by venpopov 4 months ago - 4 comments
Labels: feature

#1609 - moment_matching p_loo is wrong

Issue - State: closed - Opened by avehtari 4 months ago - 2 comments
Labels: bug

#1608 - When working with mi(), brms can add three way interactions to the Stan model when only 2-way interactions are specified in the formula

Issue - State: closed - Opened by gbiele 4 months ago - 5 comments
Labels: bug

#1607 - support joint log score in kfold

Issue - State: closed - Opened by avehtari 4 months ago - 8 comments
Labels: feature

#1606 - Update readme and messages to take into account latest loo release

Issue - State: closed - Opened by avehtari 4 months ago - 5 comments
Labels: documentation

#1605 - kfold doc errors

Issue - State: closed - Opened by avehtari 4 months ago - 6 comments
Labels: documentation

#1604 - Proposal: transform get_prior, make_stancode and make_standata into S3 methods

Pull Request - State: closed - Opened by venpopov 4 months ago - 10 comments
Labels: feature

#1601 - Error when trying to get predictions for model with monotonic effect when "drop_unused_levels=FALSE" is specified

Issue - State: closed - Opened by ksuresh17 5 months ago - 1 comment
Labels: bug

#1599 - Add an option to enforce the same parameter on monotonic effects

Issue - State: closed - Opened by ksuresh17 5 months ago - 4 comments

#1598 - Drop rows with missing values in the by variable.

Issue - State: closed - Opened by rubenarslan 5 months ago - 2 comments
Labels: bug

#1596 - custom families and `mu` parameter

Issue - State: closed - Opened by venpopov 5 months ago - 4 comments
Labels: feature

#1595 - Make shinystan optional

Issue - State: closed - Opened by alyst 5 months ago - 2 comments

#1594 - Support for handling censored data in PPC plots via imputation

Issue - State: open - Opened by avehtari 5 months ago - 2 comments
Labels: feature, post-processing

#1591 - Implement new fit algorithms: Laplace & Pathfinder

Issue - State: closed - Opened by wpetry 5 months ago - 6 comments
Labels: feature

#1590 - (potentially) Incorrect output of pvon_mises()

Issue - State: closed - Opened by venpopov 5 months ago - 3 comments
Labels: documentation

#1589 - "meanfield" variational method doesn't complete successfully

Issue - State: closed - Opened by colinorourke 5 months ago - 2 comments

#1588 - incorrect output of rmulti_normal()

Issue - State: closed - Opened by venpopov 5 months ago - 2 comments
Labels: bug

#1587 - Incorrect indexing when using custom likelihood with threading

Issue - State: closed - Opened by frankhezemans 5 months ago - 2 comments
Labels: documentation

#1586 - Implement generalized decomposition R2 priors

Issue - State: open - Opened by jear2412 6 months ago
Labels: feature, priors

#1585 - Interface for defining which prior log densities are stored for priorsense

Issue - State: open - Opened by avehtari 6 months ago - 1 comment
Labels: feature

#1584 - syntax error with CmdStan 2.34.0 backend

Issue - State: closed - Opened by dipetkov 6 months ago - 6 comments

#1583 - Stan syntax error when trying to compile an MMRM

Issue - State: closed - Opened by wlandau 6 months ago - 2 comments

#1582 - Issue with Variable Truncation Bounds Matching Distribution Bounds

Issue - State: open - Opened by StaffanBetner 6 months ago - 1 comment
Labels: feature

#1581 - Setting bounds for imputed values in brms

Issue - State: closed - Opened by gbiele 6 months ago - 2 comments

#1580 - Issue post-processing model with with Cox family type

Issue - State: closed - Opened by colinorourke 6 months ago - 8 comments
Labels: bug

#1579 - Allow CV in all posterior predictive checks

Issue - State: open - Opened by paul-buerkner 6 months ago - 2 comments
Labels: feature

#1578 - Add more pp_check types in aps_types

Pull Request - State: closed - Opened by avehtari 6 months ago - 1 comment

#1577 - Allow passing exposed stan functions to the inner most function to avoid global environment issue.

Issue - State: closed - Opened by Sandhu-SS 7 months ago - 5 comments
Labels: feature

#1576 - Add option for pseudovariance in R2D2 prior

Issue - State: open - Opened by avehtari 7 months ago - 2 comments
Labels: feature

#1575 - `.extract_model_data()`: Warn that arguments `wrhs` and `orhs` are ignored

Pull Request - State: closed - Opened by fweber144 7 months ago - 2 comments

#1574 - poisson model with rates not working with threading

Issue - State: closed - Opened by wds15 7 months ago - 3 comments
Labels: bug

#1573 - QR decomposition fails for cumulative logit models

Issue - State: closed - Opened by josh-fiechter 7 months ago - 3 comments
Labels: bug

#1572 - Error when getting reference model with k-fold cross validation for cv_varsel

Issue - State: closed - Opened by adietzel 7 months ago - 5 comments

#1571 - Add deprecation info to as.mcmc doc

Pull Request - State: closed - Opened by avehtari 7 months ago - 1 comment

#1570 - Syntax for gaussian process need to be updated

Issue - State: closed - Opened by StaffanBetner 7 months ago - 3 comments
Labels: bug

#1569 - error in kfold help page regarding future

Issue - State: closed - Opened by yanivabir 7 months ago - 1 comment
Labels: documentation

#1568 - pkgdown website needs an update?

Issue - State: closed - Opened by hansvancalster 8 months ago - 2 comments
Labels: documentation

#1567 - Implement zero inflated multinomial distribution

Issue - State: open - Opened by ABWerks 8 months ago - 1 comment
Labels: feature, family

#1566 - Export psis function

Pull Request - State: closed - Opened by sims1253 8 months ago - 4 comments

#1565 - Placement of stancode submitted via stanvars in the "if (!prior_only) { ...}" section

Issue - State: closed - Opened by gbiele 8 months ago - 2 comments

#1564 - updating model from variational Bayes to NUTS sampling

Issue - State: closed - Opened by drjhw 8 months ago - 2 comments
Labels: bug

GitHub / paul-buerkner/brms issues and pull requests