panoptes-organization/panoptes issues and pull requests

#180 - docs: use a WSGI server

Pull Request - State: closed - Opened by fgvieira 10 months ago - 1 comment

#179 - Filtering by job status

Issue - State: open - Opened by raffienficiaud 12 months ago

#178 - Swimlane for progression of similar jobs

Issue - State: open - Opened by raffienficiaud 12 months ago

#177 - Cannot delete single workflow

Issue - State: open - Opened by fgvieira 12 months ago - 1 comment

#176 - Duplicated job rows

Issue - State: open - Opened by fgvieira 12 months ago - 1 comment

#175 - Code 400 not recognized

Issue - State: open - Opened by fgvieira 12 months ago - 2 comments

#174 - Update README.md

Pull Request - State: closed - Opened by johnarevalo about 1 year ago

#173 - Job progress not recorded when using Snakemake version 7.32.0 and above

Issue - State: open - Opened by matinnuhamunada over 1 year ago - 3 comments

#172 - Deploy panoptes for production

Issue - State: closed - Opened by fgvieira over 1 year ago - 2 comments

#171 - Refactor panoptes to accept workflow ids from --wms-monitor-arg

Issue - State: open - Opened by fgypas over 1 year ago
Labels: enhancement

#170 - Release 0.2.3

Pull Request - State: closed - Opened by fgypas over 1 year ago
Labels: documentation

#169 - Release 0.2.3

Pull Request - State: closed - Opened by fgypas over 1 year ago

#168 - Update readme instructions

Pull Request - State: closed - Opened by fgypas over 1 year ago
Labels: documentation

#167 - GitHub action test example workflow

Pull Request - State: closed - Opened by fgypas over 1 year ago
Labels: enhancement

#166 - Add github actions tests

Issue - State: closed - Opened by fgypas over 1 year ago - 1 comment
Labels: CI/CD

#165 - Update README.md

Issue - State: closed - Opened by fgypas over 1 year ago
Labels: documentation

#164 - Remove unused meta.yaml

Pull Request - State: closed - Opened by fgypas over 1 year ago

#163 - Sync develop with master

Pull Request - State: closed - Opened by fgypas over 1 year ago

#162 - Update README.md replacing Travis by GH Actions

Pull Request - State: closed - Opened by kinow over 1 year ago - 3 comments

#161 - Delete anaconda organization and meta.yaml

Issue - State: closed - Opened by fgypas over 1 year ago
Labels: enhancement

#160 - Release 0.2.2

Pull Request - State: closed - Opened by fgypas over 1 year ago

#159 - Create python-publish.yml

Pull Request - State: closed - Opened by fgypas over 1 year ago

#158 - Release 0.2.1

Pull Request - State: closed - Opened by fgypas over 1 year ago

#157 - convert_unicode no longer supported by db driver

Pull Request - State: closed - Opened by ryneches over 1 year ago

#156 - `TypeError` raised at startup

Issue - State: closed - Opened by gipert over 1 year ago - 2 comments

#155 - Is this project still active?

Issue - State: closed - Opened by mhorlacher almost 2 years ago - 2 comments

#154 - Pipeline shows as running when snakemake --until flag is used

Issue - State: open - Opened by fgypas over 3 years ago
Labels: bug

#153 - Implement restart of pipelines for panoptes

Issue - State: open - Opened by fgypas over 3 years ago
Labels: enhancement

#152 - Add changes in snakemake according to the updated wms-monitor API specs

Issue - State: open - Opened by fgypas over 3 years ago - 3 comments

#151 - Implement updated API specs

Issue - State: open - Opened by fgypas over 3 years ago - 1 comment
Labels: enhancement

#150 - bump version to 0.2.0 (#145)

Pull Request - State: closed - Opened by fgypas over 3 years ago

#149 - "Problem with server" with snakemake

Issue - State: closed - Opened by kopardev almost 4 years ago - 4 comments
Labels: question

#148 - Add instructions to use panoptes via the snakemake API

Issue - State: open - Opened by fgypas almost 4 years ago
Labels: documentation, enhancement

#147 - Update README to include conda instructions via bioconda and conda-forge

Issue - State: closed - Opened by fgypas almost 4 years ago - 1 comment
Labels: documentation

#146 - Docker rate limit

Issue - State: closed - Opened by fgypas about 4 years ago - 1 comment
Labels: bug

#145 - Bump version 020

Pull Request - State: closed - Opened by agardelakos about 4 years ago - 3 comments

#144 - Release version 0.2.0

Pull Request - State: closed - Opened by fgypas about 4 years ago

#143 - Bump version 0.2.0

Pull Request - State: closed - Opened by fgypas about 4 years ago

#142 - Discussion: handled async tasks

Issue - State: open - Opened by vsoch about 4 years ago - 5 comments

#141 - Update msg parsing to not use eval

Pull Request - State: closed - Opened by vsoch about 4 years ago - 3 comments
Labels: enhancement

#140 - feature/10 Clean up DB button

Pull Request - State: closed - Opened by dafentoulis about 4 years ago - 3 comments
Labels: enhancement

#139 - Update index links, remove contribute button, update about info.

Pull Request - State: closed - Opened by fgypas about 4 years ago

#138 - Feature/137 update homepage and link

Pull Request - State: closed - Opened by fgypas about 4 years ago

#137 - Improve homepage info and links

Issue - State: closed - Opened by fgypas about 4 years ago - 1 comment
Labels: enhancement

#136 - Repo badges

Issue - State: open - Opened by fgypas about 4 years ago
Labels: enhancement

#135 - Reduce time on tests that run via github actions

Issue - State: open - Opened by fgypas about 4 years ago - 3 comments
Labels: enhancement

#134 - feature/95 table refactor,added pagination, sorting and actions

Pull Request - State: closed - Opened by dafentoulis about 4 years ago - 3 comments

#133 - Feature/95 table refactor

Pull Request - State: closed - Opened by dafentoulis about 4 years ago
Labels: javascript

#132 - Bug in test test_specific_work_flow_all_jobs_valid #131

Pull Request - State: closed - Opened by drekoumis about 4 years ago
Labels: bug, blocked

#131 - Bug in test test_specific_work_flow_all_jobs_valid

Issue - State: closed - Opened by fgypas about 4 years ago
Labels: bug

#130 - Instructions for server integration / workflow monitor standard?

Issue - State: closed - Opened by vsoch about 4 years ago - 10 comments
Labels: question

#129 - Feature/128 full crud operation

Pull Request - State: closed - Opened by drekoumis about 4 years ago
Labels: dependencies, python, database, docker

#128 - Full CRUD operation in DB

Issue - State: closed - Opened by dafentoulis about 4 years ago - 1 comment

#127 - Add SwaggerUI for the API

Issue - State: closed - Opened by fgypas about 4 years ago
Labels: enhancement, wontfix

#126 - Panoptes is running in all local IPs - not only the one set and displayed

Issue - State: open - Opened by agardelakos about 4 years ago - 1 comment

#125 - Add db integration tests

Issue - State: closed - Opened by agardelakos about 4 years ago
Labels: wontfix

#124 - Add API documentation in README.md. Update contributors. Fixes #117

Pull Request - State: closed - Opened by fgypas over 4 years ago
Labels: documentation

#123 - 121:update_readme_file

Pull Request - State: closed - Opened by deepak-uk over 4 years ago

#122 - Add instructions for singularity containers

Issue - State: open - Opened by fgypas over 4 years ago
Labels: documentation, enhancement, singularity

#121 - Incorrect python version requirement

Issue - State: closed - Opened by deepak-uk over 4 years ago - 5 comments

#120 - Feature/97 config file database path part1

Pull Request - State: closed - Opened by drekoumis over 4 years ago - 4 comments
Labels: database, experimental

#119 - feature/98 Search functionality

Pull Request - State: closed - Opened by dafentoulis over 4 years ago

#118 - Add API endpoints in panoptes --help

Issue - State: open - Opened by fgypas over 4 years ago - 2 comments
Labels: documentation, enhancement, blocked, python

#117 - Update documentation to mention all the API endpoints

Issue - State: closed - Opened by fgypas over 4 years ago - 1 comment
Labels: documentation

#116 - Automatically build and push new releases to docker hub

Issue - State: closed - Opened by fgypas over 4 years ago - 1 comment
Labels: enhancement, CI/CD, docker

#115 - Add tests for the delete endpoints

Issue - State: closed - Opened by fgypas over 4 years ago - 1 comment
Labels: python, database

#114 - Automatically build and push new releases to anaconda via CI

Issue - State: closed - Opened by fgypas over 4 years ago - 5 comments
Labels: enhancement, python, CI/CD

#113 - Automatically build and push new releases to pypi via CI

Issue - State: closed - Opened by fgypas over 4 years ago
Labels: enhancement, python, CI/CD

#112 - Feature/111 clean up whole database

Pull Request - State: closed - Opened by drekoumis over 4 years ago - 2 comments
Labels: python, database

#111 - Create API endpoint to clean up the whole database

Issue - State: closed - Opened by fgypas over 4 years ago - 1 comment
Labels: enhancement, python, database

#110 - add check if the wf is running. if running reject the deletion

Pull Request - State: closed - Opened by drekoumis over 4 years ago
Labels: python, database

#109 - Error when you run a workflow after deleting a workflow that does not exist from the database

Issue - State: closed - Opened by fgypas over 4 years ago - 1 comment
Labels: bug, python, database

#108 - Make colors consistent between workflows and jobs

Pull Request - State: closed - Opened by fgypas over 4 years ago
Labels: bug, enhancement, python

#107 - Feature/104/delete run wf

Pull Request - State: closed - Opened by drekoumis over 4 years ago

#106 - Fix the number of workflows reported on the front page

Pull Request - State: closed - Opened by fgypas over 4 years ago
Labels: bug, enhancement, python

#105 - Biohackathon 2020 accomplishments

Issue - State: closed - Opened by fgypas over 4 years ago
Labels: documentation

#104 - Make sure that when you call the API `/api/delete/<workflow-id>` the workflow is not Running

Issue - State: closed - Opened by fgypas over 4 years ago - 1 comment
Labels: enhancement, good first issue, help wanted, database, experimental

#103 - 90 delete workflow api

Pull Request - State: closed - Opened by drekoumis over 4 years ago

#102 - Investigate FastAPI and possibly switch from Flask to FastAPI

Issue - State: open - Opened by fgypas over 4 years ago - 2 comments
Labels: enhancement, wontfix, python, experimental

#101 - conda installation for mac and windows

Issue - State: closed - Opened by fgypas over 4 years ago - 1 comment
Labels: enhancement, wontfix, python

#100 - Investigate option to get a unique snakemake id for each workflow run

Issue - State: open - Opened by fgypas over 4 years ago - 1 comment
Labels: python, snakemake

#99 - When snakemake is manually cancelled the workflow remains as running

Issue - State: open - Opened by fgypas over 4 years ago - 3 comments
Labels: bug, enhancement, python, snakemake

#98 - Connect Search with functionality on the website

Issue - State: closed - Opened by fgypas over 4 years ago - 1 comment
Labels: python, javascript

#97 - Add config file to specify the database path

Issue - State: closed - Opened by fgypas over 4 years ago - 1 comment
Labels: wontfix, python, database

#96 - Update specific web components once new data appear on the server

Issue - State: open - Opened by fgypas over 4 years ago
Labels: enhancement, python, javascript

#95 - Table refactor

Issue - State: closed - Opened by fgypas over 4 years ago - 7 comments
Labels: enhancement, python, javascript

#94 - Add pagination in the workflows page

Issue - State: closed - Opened by fgypas over 4 years ago - 1 comment
Labels: duplicate, enhancement, python, javascript

#93 - Total number of workflows box in the front page does not show the total number of workflows

Issue - State: closed - Opened by fgypas over 4 years ago - 1 comment
Labels: bug, python, javascript

#92 - Support different database types

Issue - State: closed - Opened by fgypas over 4 years ago - 1 comment
Labels: enhancement, database

#91 - Hamburger button is not working

Issue - State: open - Opened by fgypas over 4 years ago - 1 comment
Labels: bug, javascript

#90 - Delete workflow API option

Issue - State: closed - Opened by fgypas over 4 years ago - 1 comment
Labels: enhancement, python

#89 - finished testing for all GET methods

Pull Request - State: closed - Opened by agardelakos over 4 years ago

#88 - Feature/conda package

Pull Request - State: closed - Opened by agardelakos over 4 years ago

#87 - release 0.1.1

Pull Request - State: closed - Opened by agardelakos over 4 years ago

#86 - Quick fix: Separate pypi installation from source code insatllation

Pull Request - State: closed - Opened by fgypas over 4 years ago
Labels: documentation

#85 - Develop

Pull Request - State: closed - Opened by agardelakos over 4 years ago

#84 - Feature/46 create pypi package

Pull Request - State: closed - Opened by agardelakos over 4 years ago

#83 - Bump dot-prop from 4.2.0 to 4.2.1 in /server/static

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 2 comments
Labels: dependencies

#82 - Bump node-sass from 4.12.0 to 4.13.1 in /server/static

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 2 comments
Labels: dependencies

#81 - Bump lodash from 4.17.14 to 4.17.20 in /server/static

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 2 comments
Labels: dependencies

GitHub / panoptes-organization/panoptes issues and pull requests