Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / paninski-lab/yass issues and pull requests

#348 - Installation issue - solution

Issue - State: closed - Opened by rtraghavan over 2 years ago - 1 comment

#347 - run `yass` without probe

Issue - State: closed - Opened by marcoistasy over 3 years ago - 3 comments

#346 - Follow Up about cortical data

Issue - State: open - Opened by mishek-thapa over 3 years ago

#345 - cortical data

Issue - State: closed - Opened by mishek-thapa over 3 years ago - 2 comments

#344 - Problem while running the train function

Issue - State: closed - Opened by botwithabeard over 3 years ago - 2 comments

#343 - Installing on WSL Ubuntu1804

Issue - State: closed - Opened by logansdmi over 3 years ago - 2 comments

#342 - Issue with master version

Issue - State: closed - Opened by alejoe91 over 3 years ago - 5 comments

#341 - Install yass on ubuntu 20.4

Issue - State: closed - Opened by samuelgarcia almost 4 years ago - 8 comments

#340 - yass and tensorflow version.

Issue - State: closed - Opened by samuelgarcia almost 4 years ago - 8 comments

#339 - Nocython38

Pull Request - State: closed - Opened by wueric about 4 years ago - 1 comment

#338 - trying to build diptest and cuda extension with a single setup.py call

Pull Request - State: closed - Opened by edublancas about 4 years ago - 11 comments

#337 - demo notebook?

Issue - State: closed - Opened by slinderman about 4 years ago - 1 comment

#336 - Yass AMI cannot be found in EC2 on AWS

Issue - State: closed - Opened by alinaheukamp over 4 years ago - 2 comments

#334 - yass.phy.run@run takes an absurd amount of memory

Issue - State: closed - Opened by DradeAW over 4 years ago - 11 comments

#333 - ValueError: could not broadcast input array in postprocess.run@post_process

Issue - State: closed - Opened by DradeAW over 4 years ago - 6 comments

#332 - Size mismatch for out.weight in loading state_dict for Detect

Issue - State: closed - Opened by DradeAW over 4 years ago - 7 comments

#331 - installation fails on fresh ubuntu 20.04

Issue - State: closed - Opened by grg2rsr over 4 years ago - 4 comments

#330 - Clustering doesn't finish on some datasets

Issue - State: closed - Opened by wueric over 4 years ago - 2 comments

#328 - "low-pass" and "high-pass" filtering definitions need to be switched

Issue - State: closed - Opened by jkbhagatio over 4 years ago - 1 comment

#327 - Installation Improvements

Pull Request - State: open - Opened by calvinytong almost 5 years ago

#326 - Need description of YASS output for phy2 GUI package.

Issue - State: closed - Opened by catubc almost 5 years ago

#325 - Need better description of YASS output files

Issue - State: open - Opened by catubc almost 5 years ago

#324 - Some Install Feedback

Issue - State: open - Opened by jkbhagatio almost 5 years ago - 1 comment

#323 - Weird spike detection at deconv cutoffs

Issue - State: closed - Opened by DradeAW almost 5 years ago - 5 comments

#322 - Assertion Error when opening with phy 2

Issue - State: closed - Opened by DradeAW almost 5 years ago - 2 comments

#321 - Size mismatch for out.weight in pre_final_deconv

Issue - State: closed - Opened by DradeAW almost 5 years ago - 9 comments

#320 - Crash during ptp_split

Issue - State: closed - Opened by DradeAW almost 5 years ago - 4 comments

#319 - detection crashes when no spike detected

Issue - State: closed - Opened by jinhyunglee almost 5 years ago - 1 comment

#318 - crash during final deconv

Issue - State: closed - Opened by wueric almost 5 years ago - 5 comments

#317 - Including pytorch as part of the installation process

Issue - State: closed - Opened by edublancas almost 5 years ago - 1 comment

#316 - Fixing yass version

Issue - State: closed - Opened by edublancas almost 5 years ago - 1 comment

#315 - check deconv difference

Pull Request - State: closed - Opened by kevinli1324 almost 5 years ago

#314 - Template soft assignment fix

Pull Request - State: closed - Opened by kevinli1324 about 5 years ago

#313 - add cuda files

Pull Request - State: open - Opened by kevinli1324 about 5 years ago - 5 comments

#312 - Template soft assignment fix

Pull Request - State: closed - Opened by kevinli1324 about 5 years ago

#311 - standardization and batch size shrink

Pull Request - State: closed - Opened by kevinli1324 about 5 years ago

#309 - Int32 spike time limits

Issue - State: closed - Opened by catubc about 5 years ago

#308 - fixed spatial covariance calc

Pull Request - State: closed - Opened by kevinli1324 about 5 years ago

#306 - Added two functions to handle template edges by zero padding.

Pull Request - State: closed - Opened by hooshmandshr about 5 years ago

#305 - Template soft assign

Pull Request - State: closed - Opened by kevinli1324 about 5 years ago

#304 - Post-deconv merge frequent crash

Issue - State: closed - Opened by catubc over 5 years ago

#303 - yass convert: IndexError: index 41 is out of bounds for axis 0 with size 10

Issue - State: closed - Opened by llobetv over 5 years ago - 1 comment

#302 - KeyError: 'height_list is not a file in the archive'

Issue - State: closed - Opened by llobetv over 5 years ago - 7 comments

#297 - deconvolve: IndexError: index 12 is out of bounds for axis 0 with size 12

Issue - State: closed - Opened by llobetv over 5 years ago - 2 comments

#296 - ValueError: Object arrays cannot be loaded when allow_pickle=False

Issue - State: closed - Opened by llobetv over 5 years ago - 1 comment

#294 - denoise: ValueError: cannot reshape array of size 0 into shape (0,newaxis)

Issue - State: closed - Opened by llobetv over 5 years ago - 3 comments

#293 - ImportError: cannot import name 'run' (from yass.deconvolve.run)

Issue - State: closed - Opened by jamesjun over 5 years ago - 5 comments

#292 - ERROR loading `import cudaSpline as deconv`. What CUDA version should I use?

Issue - State: closed - Opened by jamesjun over 5 years ago - 2 comments

#291 - Failed to buid, seg fault

Issue - State: closed - Opened by jamesjun over 5 years ago - 1 comment

#290 - stuck in the clustering process

Issue - State: closed - Opened by pplenck over 5 years ago - 1 comment

#288 - implement YASS on SpikeInterface

Issue - State: closed - Opened by alejoe91 over 5 years ago - 8 comments

#287 - High Resolution Double Peak Detection for Deconvolution

Pull Request - State: closed - Opened by hooshmandshr almost 6 years ago

#284 - Dev notch finder

Pull Request - State: closed - Opened by nd2506 almost 6 years ago

#277 - adaptive triaging changes

Pull Request - State: closed - Opened by nd2506 about 6 years ago

#275 - Nish gen data

Pull Request - State: closed - Opened by nd2506 about 6 years ago

#274 - fix for denoting

Pull Request - State: closed - Opened by jinhyunglee about 6 years ago

#271 - yass.templates module is mostly unused

Issue - State: closed - Opened by edublancas about 6 years ago - 1 comment

#257 - Conda installation instructions

Issue - State: closed - Opened by catubc over 6 years ago - 6 comments

#255 - Standardizing each chunk vs. all data

Issue - State: closed - Opened by catubc over 6 years ago

#250 - Competing parallelization flags

Issue - State: closed - Opened by catubc over 6 years ago - 1 comment

#248 - y_ae no longer used in Autoencoder

Issue - State: closed - Opened by edublancas over 6 years ago

#237 - Autodetect NN training length and compare with config spike length

Issue - State: closed - Opened by catubc over 6 years ago - 1 comment

#235 - Iterative clusteirng: mfm can get stuck

Issue - State: closed - Opened by catubc over 6 years ago

#234 - Don't discard clusters with < min_spikes automatically

Issue - State: closed - Opened by catubc over 6 years ago

#231 - Missing documentation in cluster.run

Issue - State: closed - Opened by edublancas almost 7 years ago

#228 - Standardization being done over every chunk

Issue - State: closed - Opened by catubc almost 7 years ago

#225 - setting up max gpu memory kills python notebook kernel

Issue - State: closed - Opened by nd2506 almost 7 years ago - 1 comment

#224 - Parallelize all spike_train searches

Issue - State: closed - Opened by catubc almost 7 years ago

#223 - Compute template max-channel using absolute values

Issue - State: closed - Opened by catubc almost 7 years ago

#221 - Do whitening with smaller batch of data

Issue - State: closed - Opened by catubc almost 7 years ago

#219 - max_gpu_memory parameter doesn't relate with GPU memory

Issue - State: closed - Opened by catubc almost 7 years ago

#218 - Allow end-user to gracefully exit multiprocessing modules

Issue - State: closed - Opened by catubc almost 7 years ago

#216 - Basic streaming implementation

Issue - State: closed - Opened by calvinytong almost 7 years ago - 2 comments
Labels: streaming

#209 - Make sure every field in config is still relevant

Issue - State: closed - Opened by edublancas almost 7 years ago

#205 - Dealing with memory issues

Issue - State: closed - Opened by edublancas almost 7 years ago - 1 comment

#193 - peter-preproc typos x 2

Issue - State: closed - Opened by catubc almost 7 years ago

#190 - Reorganize get_locations_features functions in detect step

Issue - State: closed - Opened by edublancas almost 7 years ago

#170 - Typo in cluster.run at triage return?

Issue - State: closed - Opened by catubc almost 7 years ago - 1 comment

#161 - Computing waveforms is slow

Issue - State: closed - Opened by edublancas almost 7 years ago
Labels: critical

#114 - bugs in tests/evaluation/retinal_evaluation.py

Issue - State: closed - Opened by jinhyunglee almost 7 years ago - 1 comment

#110 - Expand Standard Plotting Class

Issue - State: closed - Opened by hooshmandshr almost 7 years ago

#98 - Simulated data for examples

Issue - State: closed - Opened by edublancas about 7 years ago

#78 - Add documentation in process functions

Issue - State: closed - Opened by edublancas about 7 years ago

#55 - Fix templates dimension

Issue - State: closed - Opened by edublancas about 7 years ago

#53 - option to clean tmp/ folder when using python API

Issue - State: closed - Opened by edublancas about 7 years ago

#49 - compare CPU/GPU results

Issue - State: closed - Opened by edublancas about 7 years ago

#46 - Finish phy integration

Issue - State: closed - Opened by edublancas about 7 years ago - 1 comment

#39 - working example with multiple clusters

Issue - State: closed - Opened by jsv13 about 7 years ago - 22 comments

#37 - add neuropixel comprehensive example

Issue - State: closed - Opened by edublancas about 7 years ago