Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / paddlepaddle/paddlehelix issues and pull requests

#357 - Fix errors.

Pull Request - State: closed - Opened by leaves520 9 days ago - 1 comment

#356 - helixfold3 how to set constraints

Issue - State: open - Opened by kehan777 9 days ago

#355 - gem 预训练权重问题

Issue - State: open - Opened by reese-lee1 13 days ago - 5 comments

#353 - Error in HelixFold3: ref_atom_name_chars < 64

Issue - State: open - Opened by ebettler 22 days ago - 3 comments

#352 - protein/dna预测任务，无限等待

Issue - State: closed - Opened by Shi-YangWang 23 days ago

#350 - Add polymer terminal atom.

Pull Request - State: closed - Opened by leaves520 2 months ago

#349 - Add polymer terminal atom.

Pull Request - State: closed - Opened by leaves520 2 months ago - 1 comment

#348 - Ranking score calculation?

Issue - State: open - Opened by hallelujahxn 2 months ago

#347 - docs: add Japanese documentation files

Pull Request - State: open - Opened by eltociear 2 months ago - 2 comments

#346 - HelixFold3: Can't solve the UnpicklingError issue

Issue - State: closed - Opened by YoshitakaMo 2 months ago - 1 comment

#345 - Carboxyl terminus of the protein lacks an oxygen atom.

Issue - State: closed - Opened by Garhorne0813 2 months ago - 1 comment

#343 - HelixFold3 predicts unreasonable structures

Issue - State: open - Opened by Garhorne0813 2 months ago - 2 comments

#341 - CUDA and cuDNN version mismatch HelixFold3

Issue - State: closed - Opened by ahmedselim2017 2 months ago - 2 comments

#340 - Hf3 fix: SM conf gen and license

Pull Request - State: closed - Opened by RyanGarciaLI 2 months ago

#339 - ssDNA won't work

Issue - State: closed - Opened by jkosinski 2 months ago - 2 comments

#338 - How to include post-translation modifications?

Issue - State: open - Opened by jkosinski 2 months ago - 1 comment

#336 - helixfold3 runs out of memory

Issue - State: closed - Opened by Garhorne0813 2 months ago - 3 comments

#335 - Apache 2 license missing

Issue - State: open - Opened by igor-krawczuk 2 months ago - 1 comment

#334 - Server connectivity from USA

Issue - State: open - Opened by sokrypton 2 months ago - 3 comments

#333 - gem problem

Issue - State: open - Opened by reese-lee1 3 months ago - 1 comment

#332 - Regarding the download command issue

Issue - State: open - Opened by LUDENGZHEN 3 months ago - 2 comments

#331 - About HelixFold3 PTMs

Issue - State: open - Opened by v-shaoningli 3 months ago - 2 comments

#330 - keyerror

Issue - State: closed - Opened by reese-lee1 3 months ago - 2 comments

#329 - feat/docs/cases: Covalent Bond Input

Pull Request - State: open - Opened by YaoYinYing 3 months ago - 4 comments

#328 - fix unzip checkpoint shell script

Pull Request - State: closed - Opened by RyanGarciaLI 3 months ago

#327 - On the issue of Scripts bash commands

Issue - State: closed - Opened by LUDENGZHEN 3 months ago - 2 comments

#326 - Clarify HelixFold3 license

Issue - State: closed - Opened by agitter 3 months ago - 1 comment

#325 - PR-1: Hydra-Powered YAML Configuration and run as Pip module

Pull Request - State: open - Opened by YaoYinYing 3 months ago - 2 comments

#324 - HelixFold3 的测试数据集与AF3对齐的问题

Issue - State: open - Opened by JinyuanSun 3 months ago - 1 comment

#323 - Any Ideas about Covalent bond btw ligand and protein residue?

Issue - State: closed - Opened by YaoYinYing 3 months ago - 2 comments

#322 - Posebusters time split

Issue - State: closed - Opened by bfabiandev 3 months ago - 2 comments

#321 - Hydra-Powered YAML Configuration and Enhanced File Support in HelixFold3

Pull Request - State: closed - Opened by YaoYinYing 3 months ago - 4 comments

#320 - PaddleHelix工具集应用

Issue - State: open - Opened by zhangxianhe666 3 months ago - 1 comment

#319 - Hydra configuration for HelixFold3

Issue - State: closed - Opened by YaoYinYing 3 months ago - 1 comment

#318 - HelixFold3中ccd_preprocessed_etkdg.pkl.gz文件读取问题

Issue - State: closed - Opened by lbsskt 3 months ago - 2 comments

#317 - Fix cmd bin missing and add more demo

Pull Request - State: closed - Opened by RyanGarciaLI 3 months ago

#316 - update readme and demo result

Pull Request - State: closed - Opened by RyanGarciaLI 3 months ago

#314 - set fp32 by default, add demo result

Pull Request - State: closed - Opened by RyanGarciaLI 3 months ago

#313 - HelixFold3代码存在各种bug

Issue - State: closed - Opened by Maikuraky 3 months ago - 3 comments

#312 - disable no MSA mode

Pull Request - State: closed - Opened by RyanGarciaLI 3 months ago

#311 - [Important] search MSA by default

Pull Request - State: closed - Opened by RyanGarciaLI 3 months ago

#310 - recompute feature for every infer task

Pull Request - State: closed - Opened by RyanGarciaLI 3 months ago

#309 - update readme in dir and title, show our report

Pull Request - State: closed - Opened by RyanGarciaLI 3 months ago

#308 - fix hyperlink

Pull Request - State: closed - Opened by RyanGarciaLI 3 months ago

#307 - Hf3 bugs fix and update readme

Pull Request - State: closed - Opened by RyanGarciaLI 3 months ago

#306 - HelixFold3 init commit

Pull Request - State: closed - Opened by RyanGarciaLI 3 months ago

#305 - HelixFold3

Pull Request - State: closed - Opened by RyanGarciaLI 3 months ago - 1 comment

#303 - add infer

Pull Request - State: closed - Opened by nickyoungforu 4 months ago

#302 - Protx

Pull Request - State: closed - Opened by nickyoungforu 4 months ago

#301 - modify some descriptions in helixprot/readme

Pull Request - State: closed - Opened by nickyoungforu 4 months ago

#300 - init helixprotx

Pull Request - State: closed - Opened by nickyoungforu 4 months ago

#299 - Usage problem

Issue - State: open - Opened by ActionBeam 5 months ago - 2 comments

#298 - add drug-drug-interaction

Pull Request - State: open - Opened by yeyeahh 5 months ago - 1 comment

#297 - add drug-drug-interaction

Pull Request - State: closed - Opened by yeyeahh 5 months ago - 1 comment

#296 - add drug-drug-interaction

Pull Request - State: closed - Opened by yeyeahh 5 months ago - 1 comment

#295 - pip install paddlehelix fails due to sklearn deprecation

Issue - State: open - Opened by AndyLiu-121 5 months ago - 2 comments

#293 - Helixdock fix requirements and dataset config issue

Pull Request - State: closed - Opened by Noisyntrain 6 months ago

#292 - Posebuster dataset demo in HelixDock

Issue - State: open - Opened by ivandon15 6 months ago - 1 comment

#291 - add environment requirements

Pull Request - State: closed - Opened by Noisyntrain 6 months ago

#290 - Merge pull request #288 from PaddlePaddle/helixdock

Pull Request - State: closed - Opened by Noisyntrain 6 months ago

#289 - Requirement.txt for helixdock and examples

Issue - State: open - Opened by lifecodetest 6 months ago - 4 comments

#288 - Update README and latest news

Pull Request - State: closed - Opened by Noisyntrain 6 months ago

#287 - Update README.md

Pull Request - State: closed - Opened by Noisyntrain 6 months ago

#286 - Update README.md

Pull Request - State: closed - Opened by Noisyntrain 6 months ago

#285 - Update README.md

Pull Request - State: closed - Opened by Noisyntrain 6 months ago

#284 - HelixDock init commit

Pull Request - State: closed - Opened by xiaoyao4573 6 months ago

#283 - Fix dependency name for scikit-learn in setup.py

Pull Request - State: open - Opened by linkedlist771 6 months ago - 3 comments

#282 - creating HelixDock directory

Pull Request - State: closed - Opened by Noisyntrain 6 months ago

#281 - hiv和muv数据集

Issue - State: open - Opened by zoey731 6 months ago - 1 comment

#280 - pip install paddlehelix报错

Issue - State: open - Opened by wdi-nancy 7 months ago - 2 comments

#279 - 运行helixfold-single-inference.py 报错

Issue - State: open - Opened by Linzy19 7 months ago - 1 comment

#278 - Update README_train.md

Pull Request - State: closed - Opened by BeingGod 8 months ago - 1 comment

#274 - 加载GEM pretrain model提示模型shape和权重shape不一致

Issue - State: closed - Opened by wjybill 12 months ago - 1 comment

#273 - paddlehelix安装问题

Issue - State: open - Opened by ShaunZhang7 12 months ago - 4 comments

#272 - Get distogram prediction from Helix-single

Issue - State: open - Opened by ShuhaoGithub 12 months ago

#271 - Add a new Equivariant GNN named ViSNet

Pull Request - State: open - Opened by yusowa0716 about 1 year ago - 1 comment

#270 - 权重

Issue - State: open - Opened by luyao-cv about 1 year ago

#269 - 运行tutorial的时候出现与cuda有关的error

Issue - State: closed - Opened by wjybill about 1 year ago - 1 comment

#268 - ask for the generation of processed.pkl in the geomGCL

Issue - State: open - Opened by Yanara-Tian about 1 year ago - 1 comment

#267 - Upload the codes of paper CamE

Pull Request - State: closed - Opened by quqxui about 1 year ago - 1 comment

#266 - how to inference with DCU

Issue - State: open - Opened by lijxgit about 1 year ago

#265 - minor update

Pull Request - State: closed - Opened by LihangLiu over 1 year ago - 1 comment

#263 - add giant

Pull Request - State: closed - Opened by agave233 over 1 year ago

#262 - Encountered ImportError when using HelixFold-Single.

Issue - State: closed - Opened by ZheJiangLabCode over 1 year ago - 1 comment

#246 - update the first version of Helixfold cpu onto helixfold_cpu branch

Pull Request - State: open - Opened by intelyoungway almost 2 years ago - 1 comment

#221 - pip install paddlehelix

Issue - State: closed - Opened by sightsIndeep about 2 years ago - 7 comments