Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / pachterlab/gget issues and pull requests

#60 - Improve 'curl is missing' error for gget ref -d (include link to install instructions)

Issue - State: closed - Opened by adamrtalbot over 1 year ago - 3 comments
Labels: enhancement

#58 - Ability to match parameters of BLAST as per the web app

Issue - State: open - Opened by vkullu over 1 year ago - 2 comments
Labels: enhancement

#54 - Update enrichr.md

Pull Request - State: closed - Opened by DylanLawless over 1 year ago - 1 comment

#53 - Add lxml package to requirements.txt dependencies

Issue - State: closed - Opened by lvbauer over 1 year ago - 1 comment

#52 - [gget_alphafold] - Feature Request - Add an option to submit a MSA instead of a protein sequence

Issue - State: open - Opened by kchennen over 1 year ago - 1 comment
Labels: enhancement

#51 - AttributeError: module 'psutil' has no attribute 'Process'

Issue - State: closed - Opened by najibveto over 1 year ago - 5 comments

#49 - gget alphafold: Add option to define jackhmmer save directory

Issue - State: open - Opened by lauraluebbert almost 2 years ago
Labels: enhancement

#48 - Dev -> main

Pull Request - State: closed - Opened by lauraluebbert almost 2 years ago

#47 - Setting up gget website

Pull Request - State: closed - Opened by lauraluebbert almost 2 years ago

#46 - Jupyter Notebook Kernel Dies When Using gget alphafold

Issue - State: closed - Opened by tmileur almost 2 years ago - 3 comments

#45 - Add Uniprot localisation data

Issue - State: closed - Opened by Nusob888 almost 2 years ago - 3 comments
Labels: enhancement

#44 - Error detecting openmm

Issue - State: closed - Opened by LalitNM about 2 years ago - 14 comments

#43 - AlphaFold Multimer

Issue - State: closed - Opened by epkumpu about 2 years ago - 4 comments

#42 - dev -> main gget pdb

Pull Request - State: closed - Opened by lauraluebbert about 2 years ago - 1 comment

#41 - Keyerror: "0000:query"

Issue - State: closed - Opened by sharzil1994 about 2 years ago - 5 comments

#40 - Updated alphafold output to include pLDDT

Pull Request - State: closed - Opened by lauraluebbert about 2 years ago

#38 - pdb module

Issue - State: closed - Opened by sbliven about 2 years ago - 2 comments
Labels: enhancement

#37 - openmm=7.5.1 is no longer available from conda-forge.

Issue - State: closed - Opened by ahwchemistry about 2 years ago - 2 comments

#36 - Fails to depict and answer the polymeric forms

Issue - State: closed - Opened by Harpreet525 about 2 years ago - 4 comments

#35 - AlphaFold model parameters download error

Issue - State: closed - Opened by EvoEpi about 2 years ago - 3 comments

#34 - Frozen terminal

Issue - State: closed - Opened by lt11 about 2 years ago - 1 comment

#33 - Error running alphafold

Issue - State: closed - Opened by xinyangbing about 2 years ago - 5 comments

#32 - Dev -> main

Pull Request - State: closed - Opened by lauraluebbert about 2 years ago - 1 comment

#31 - Local variable 'db_connection' referenced before assignment

Issue - State: closed - Opened by alexpreynolds about 2 years ago - 4 comments

#30 - gget alphafold "zsh: illegal hardware instruction" on M1

Issue - State: closed - Opened by alwhiteh about 2 years ago - 9 comments

#29 - Dev

Pull Request - State: closed - Opened by lauraluebbert about 2 years ago

#27 - Added plants to gget ref

Pull Request - State: closed - Opened by lauraluebbert about 2 years ago

#26 - [Errno 104] Connection reset by peer

Issue - State: closed - Opened by lara-marinelli about 2 years ago - 1 comment

#25 - gget ref for non-vertebrate species

Issue - State: closed - Opened by gonzalobenegas about 2 years ago - 2 comments

#24 - Updated to new UniProt API structure

Pull Request - State: closed - Opened by lauraluebbert over 2 years ago

#23 - Improved UniProt error message handling

Pull Request - State: closed - Opened by lauraluebbert over 2 years ago

#21 - transcribe -> translate

Pull Request - State: closed - Opened by lauraluebbert over 2 years ago - 1 comment

#20 - Dev

Pull Request - State: closed - Opened by lauraluebbert over 2 years ago

#19 - Request databases to be added to gget

Issue - State: open - Opened by lauraluebbert over 2 years ago - 3 comments
Labels: enhancement

#18 - Add feature to fetch UCSC IDs

Issue - State: open - Opened by Joaodemeirelles over 2 years ago
Labels: enhancement

#17 - Fixed help and version cli flags

Pull Request - State: closed - Opened by lauraluebbert over 2 years ago

#16 - A couple CLI tweaks

Issue - State: closed - Opened by mjsteinbaugh over 2 years ago - 1 comment

#13 - Dev -> main for v0.2.0

Pull Request - State: closed - Opened by lauraluebbert over 2 years ago

#11 - main -> dev

Pull Request - State: closed - Opened by lauraluebbert over 2 years ago

#10 - Dev -> main

Pull Request - State: closed - Opened by lauraluebbert over 2 years ago

#9 - Background for enrichr

Issue - State: closed - Opened by gjhuizing over 2 years ago - 3 comments
Labels: enhancement

#8 - Dev

Pull Request - State: closed - Opened by lauraluebbert over 2 years ago

#7 - export plot as svg

Issue - State: closed - Opened by nahid18 over 2 years ago - 6 comments

#6 - potential issue with UniProt connection

Issue - State: closed - Opened by keoughkath over 2 years ago - 3 comments

#5 - Option to BLAST one protein sequence against another

Issue - State: closed - Opened by hoangthienan95 over 2 years ago - 3 comments
Labels: enhancement

#4 - Add bioconda badge to README

Pull Request - State: closed - Opened by nh13 over 2 years ago

#3 - Added json flag and minor bug fixes

Pull Request - State: closed - Opened by lauraluebbert over 2 years ago

#2 - dev -> main

Pull Request - State: closed - Opened by lauraluebbert over 2 years ago

#1 - Dev -> main

Pull Request - State: closed - Opened by lauraluebbert over 2 years ago - 1 comment