Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / pachterlab/gget issues and pull requests
#60 - Improve 'curl is missing' error for gget ref -d (include link to install instructions)
Issue -
State: closed - Opened by adamrtalbot over 1 year ago
- 3 comments
Labels: enhancement
#58 - Ability to match parameters of BLAST as per the web app
Issue -
State: open - Opened by vkullu over 1 year ago
- 2 comments
Labels: enhancement
#57 - Error in gget setup alphafold: Ignored the following versions that require a different python version...
Issue -
State: closed - Opened by almart7 over 1 year ago
- 6 comments
#56 - gget info should return results that were fetched succesfully, even if one database returns an error
Issue -
State: closed - Opened by lauraluebbert over 1 year ago
- 2 comments
#55 - gget alphafold: RuntimeError: jaxlib version 0.4.1 is newer than and incompatible with jax version 0.3.25. Please update your jax and/or jaxlib packages
Issue -
State: closed - Opened by tsucheta over 1 year ago
- 1 comment
#54 - Update enrichr.md
Pull Request -
State: closed - Opened by DylanLawless over 1 year ago
- 1 comment
#53 - Add lxml package to requirements.txt dependencies
Issue -
State: closed - Opened by lvbauer over 1 year ago
- 1 comment
#52 - [gget_alphafold] - Feature Request - Add an option to submit a MSA instead of a protein sequence
Issue -
State: open - Opened by kchennen over 1 year ago
- 1 comment
Labels: enhancement
#51 - AttributeError: module 'psutil' has no attribute 'Process'
Issue -
State: closed - Opened by najibveto over 1 year ago
- 5 comments
#50 - Dev -> main Updating gget alphafold to match recent changes by Deepmind
Pull Request -
State: closed - Opened by lauraluebbert almost 2 years ago
#49 - gget alphafold: Add option to define jackhmmer save directory
Issue -
State: open - Opened by lauraluebbert almost 2 years ago
Labels: enhancement
#48 - Dev -> main
Pull Request -
State: closed - Opened by lauraluebbert almost 2 years ago
#47 - Setting up gget website
Pull Request -
State: closed - Opened by lauraluebbert almost 2 years ago
#46 - Jupyter Notebook Kernel Dies When Using gget alphafold
Issue -
State: closed - Opened by tmileur almost 2 years ago
- 3 comments
#45 - Add Uniprot localisation data
Issue -
State: closed - Opened by Nusob888 almost 2 years ago
- 3 comments
Labels: enhancement
#44 - Error detecting openmm
Issue -
State: closed - Opened by LalitNM about 2 years ago
- 14 comments
#43 - AlphaFold Multimer
Issue -
State: closed - Opened by epkumpu about 2 years ago
- 4 comments
#42 - dev -> main gget pdb
Pull Request -
State: closed - Opened by lauraluebbert about 2 years ago
- 1 comment
#41 - Keyerror: "0000:query"
Issue -
State: closed - Opened by sharzil1994 about 2 years ago
- 5 comments
#40 - Updated alphafold output to include pLDDT
Pull Request -
State: closed - Opened by lauraluebbert about 2 years ago
#38 - pdb module
Issue -
State: closed - Opened by sbliven about 2 years ago
- 2 comments
Labels: enhancement
#37 - openmm=7.5.1 is no longer available from conda-forge.
Issue -
State: closed - Opened by ahwchemistry about 2 years ago
- 2 comments
#36 - Fails to depict and answer the polymeric forms
Issue -
State: closed - Opened by Harpreet525 about 2 years ago
- 4 comments
#35 - AlphaFold model parameters download error
Issue -
State: closed - Opened by EvoEpi about 2 years ago
- 3 comments
#34 - Frozen terminal
Issue -
State: closed - Opened by lt11 about 2 years ago
- 1 comment
#33 - Error running alphafold
Issue -
State: closed - Opened by xinyangbing about 2 years ago
- 5 comments
#32 - Dev -> main
Pull Request -
State: closed - Opened by lauraluebbert about 2 years ago
- 1 comment
#31 - Local variable 'db_connection' referenced before assignment
Issue -
State: closed - Opened by alexpreynolds about 2 years ago
- 4 comments
#30 - gget alphafold "zsh: illegal hardware instruction" on M1
Issue -
State: closed - Opened by alwhiteh about 2 years ago
- 9 comments
#29 - Dev
Pull Request -
State: closed - Opened by lauraluebbert about 2 years ago
#27 - Added plants to gget ref
Pull Request -
State: closed - Opened by lauraluebbert about 2 years ago
#26 - [Errno 104] Connection reset by peer
Issue -
State: closed - Opened by lara-marinelli about 2 years ago
- 1 comment
#25 - gget ref for non-vertebrate species
Issue -
State: closed - Opened by gonzalobenegas about 2 years ago
- 2 comments
#24 - Updated to new UniProt API structure
Pull Request -
State: closed - Opened by lauraluebbert over 2 years ago
#23 - Improved UniProt error message handling
Pull Request -
State: closed - Opened by lauraluebbert over 2 years ago
#22 - All connections to UniProt are currently failing, due to the update to the new UniProt website
Issue -
State: closed - Opened by lauraluebbert over 2 years ago
- 1 comment
#21 - transcribe -> translate
Pull Request -
State: closed - Opened by lauraluebbert over 2 years ago
- 1 comment
#20 - Dev
Pull Request -
State: closed - Opened by lauraluebbert over 2 years ago
#19 - Request databases to be added to gget
Issue -
State: open - Opened by lauraluebbert over 2 years ago
- 3 comments
Labels: enhancement
#18 - Add feature to fetch UCSC IDs
Issue -
State: open - Opened by Joaodemeirelles over 2 years ago
Labels: enhancement
#17 - Fixed help and version cli flags
Pull Request -
State: closed - Opened by lauraluebbert over 2 years ago
#16 - A couple CLI tweaks
Issue -
State: closed - Opened by mjsteinbaugh over 2 years ago
- 1 comment
#13 - Dev -> main for v0.2.0
Pull Request -
State: closed - Opened by lauraluebbert over 2 years ago
#11 - main -> dev
Pull Request -
State: closed - Opened by lauraluebbert over 2 years ago
#10 - Dev -> main
Pull Request -
State: closed - Opened by lauraluebbert over 2 years ago
#9 - Background for enrichr
Issue -
State: closed - Opened by gjhuizing over 2 years ago
- 3 comments
Labels: enhancement
#8 - Dev
Pull Request -
State: closed - Opened by lauraluebbert over 2 years ago
#7 - export plot as svg
Issue -
State: closed - Opened by nahid18 over 2 years ago
- 6 comments
#6 - potential issue with UniProt connection
Issue -
State: closed - Opened by keoughkath over 2 years ago
- 3 comments
#5 - Option to BLAST one protein sequence against another
Issue -
State: closed - Opened by hoangthienan95 over 2 years ago
- 3 comments
Labels: enhancement
#4 - Add bioconda badge to README
Pull Request -
State: closed - Opened by nh13 over 2 years ago
#3 - Added json flag and minor bug fixes
Pull Request -
State: closed - Opened by lauraluebbert over 2 years ago
#2 - dev -> main
Pull Request -
State: closed - Opened by lauraluebbert over 2 years ago
#1 - Dev -> main
Pull Request -
State: closed - Opened by lauraluebbert over 2 years ago
- 1 comment