Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / pachterlab/gget issues and pull requests
#136 - Dev -> main
Pull Request -
State: closed - Opened by lauraluebbert about 1 month ago
#135 - Updated inversion function and commented out test in gget_mutate
Pull Request -
State: closed - Opened by josephrich98 about 1 month ago
#134 - Sync dev and main
Pull Request -
State: closed - Opened by lauraluebbert about 1 month ago
#133 - Dev -> main
Pull Request -
State: closed - Opened by lauraluebbert about 1 month ago
#132 - sync main and dev
Pull Request -
State: closed - Opened by lauraluebbert about 1 month ago
#131 - Dev -> main
Pull Request -
State: closed - Opened by lauraluebbert about 1 month ago
#130 - Cosmic dev -> main
Pull Request -
State: closed - Opened by lauraluebbert about 1 month ago
#129 - Issue finding ensembl database for homo_sapiens release 112 37
Issue -
State: closed - Opened by JackCurragh about 1 month ago
- 3 comments
#128 - Create gget_mutate.py
Pull Request -
State: closed - Opened by josephrich98 about 2 months ago
#127 - matching dev and main
Pull Request -
State: closed - Opened by lauraluebbert 2 months ago
#126 - matching dev and main
Pull Request -
State: closed - Opened by lauraluebbert 2 months ago
#125 - Dev -> Main: minor website updates
Pull Request -
State: closed - Opened by lauraluebbert 2 months ago
#124 - Dataverse data access module
Pull Request -
State: open - Opened by abearab 3 months ago
- 3 comments
#123 - Fix Windows issue with gget setup elm
Pull Request -
State: closed - Opened by lauraluebbert 5 months ago
#122 - Add " to Windows command
Pull Request -
State: closed - Opened by mboffelli 5 months ago
#121 - Add module to depmap database
Issue -
State: open - Opened by lauraluebbert 5 months ago
- 1 comment
Labels: enhancement
#120 - Dev -> main
Pull Request -
State: closed - Opened by lauraluebbert 5 months ago
#119 - Is it possible to get all ELM's using gget?
Issue -
State: closed - Opened by Abhishaike 6 months ago
- 4 comments
Labels: enhancement
#118 - Module to download MitoCarta3 database
Issue -
State: open - Opened by lauraluebbert 6 months ago
Labels: enhancement
#117 - Add module to COSMIC database
Pull Request -
State: closed - Opened by AubakirovArman 6 months ago
- 1 comment
#116 - Update elm.md
Pull Request -
State: closed - Opened by anhchi172 6 months ago
#115 - KeyError: 'Primary_Acc'
Issue -
State: closed - Opened by CLZHANG96 7 months ago
- 3 comments
#114 - Add module for reactome
Issue -
State: open - Opened by lauraluebbert 7 months ago
Labels: enhancement
#113 - Add error message for NCBI server overload and reduce NCBI unit tests
Pull Request -
State: closed - Opened by lauraluebbert 8 months ago
#112 - Add module to COSMIC database
Issue -
State: closed - Opened by lauraluebbert 8 months ago
Labels: enhancement
#111 - Fix bug in gget cellxgene
Pull Request -
State: closed - Opened by lauraluebbert 8 months ago
#110 - gget.cellxgene TileDBError error when trying to return anndata
Issue -
State: closed - Opened by rpeys 8 months ago
- 4 comments
#109 - Dev -> main
Pull Request -
State: closed - Opened by lauraluebbert 8 months ago
#108 - Elm -> dev
Pull Request -
State: closed - Opened by lauraluebbert 8 months ago
#107 - gget seq encounters missing gene name from uniprot and throws type error
Issue -
State: closed - Opened by rhngla 9 months ago
- 2 comments
#106 - Feature proposal: KEGG PATHWAY image generation
Pull Request -
State: closed - Opened by noriakis 9 months ago
- 2 comments
#105 - Laura is the best
Pull Request -
State: closed - Opened by victorg775 9 months ago
#104 - Multiple sequence alignment for multiple species
Issue -
State: closed - Opened by mini374 9 months ago
- 10 comments
#103 - Request addition of Open Targets API
Issue -
State: open - Opened by lakigigar 9 months ago
Labels: enhancement
#102 - Replace deprecated df.applymap with df.map
Pull Request -
State: closed - Opened by vecerkovakaterina 10 months ago
#101 - Invalid command line Expected -option_name or --option_name, got '-' using gget muscle
Issue -
State: closed - Opened by emilyrkang 11 months ago
- 6 comments
#100 - Rewrite gget BLAST to use BLAST+ instead of deprecated NCBI server
Issue -
State: open - Opened by lauraluebbert 11 months ago
Labels: enhancement
#99 - Fix text errors Spanish translation of gget website
Pull Request -
State: closed - Opened by victorg775 11 months ago
#98 - Spanish translation of gget website
Pull Request -
State: closed - Opened by lauraluebbert 11 months ago
#96 - gget search synonym and fixture updates
Pull Request -
State: closed - Opened by anhchi172 11 months ago
#95 - gget search with synonyms
Pull Request -
State: closed - Opened by anhchi172 11 months ago
#94 - Enrichr
Pull Request -
State: closed - Opened by anhchi172 11 months ago
#93 - Enrichr add background
Pull Request -
State: closed - Opened by anhchi172 11 months ago
- 1 comment
#92 - Update unit tests for new ensembl release
Pull Request -
State: closed - Opened by anhchi172 12 months ago
- 1 comment
#91 - gget pdb error in python
Issue -
State: closed - Opened by Paulie-ai 12 months ago
- 3 comments
Labels: bug
#90 - expand gget search to include synonym hits in addition to name and description hits
Issue -
State: closed - Opened by KleinSamuel about 1 year ago
- 4 comments
#89 - Specify version in ensembl "search" module
Issue -
State: closed - Opened by KleinSamuel about 1 year ago
- 2 comments
Labels: enhancement
#87 - Update documentation census version to 2023-08-15
Pull Request -
State: closed - Opened by anhchi172 about 1 year ago
#86 - Update Fixtures
Pull Request -
State: closed - Opened by anhchi172 about 1 year ago
#85 - Request addition of Eukaryotic Linear Motif database
Issue -
State: closed - Opened by lakigigar about 1 year ago
- 1 comment
Labels: enhancement
#83 - Update unittest fixtures
Pull Request -
State: closed - Opened by lauraluebbert about 1 year ago
#81 - dev -> main
Pull Request -
State: closed - Opened by lauraluebbert about 1 year ago
#80 - gget blast sequence needs to be capitalized for automatic recognition of nucleotide/amino acid seq
Issue -
State: closed - Opened by lauraluebbert about 1 year ago
- 1 comment
#78 - cellxgene filter improvements
Issue -
State: closed - Opened by atolopko-czi about 1 year ago
- 1 comment
Labels: enhancement
#77 - Add ensembl plants to search
Pull Request -
State: closed - Opened by tdido about 1 year ago
#76 - Create CODE_OF_CONDUCT.md
Pull Request -
State: closed - Opened by lauraluebbert about 1 year ago
#75 - Add ensembl plants to search
Pull Request -
State: closed - Opened by tdido about 1 year ago
- 2 comments
#74 - Fix license classifier
Pull Request -
State: closed - Opened by cbrueffer about 1 year ago
- 1 comment
#73 - GENCODE GTFs+FASTAs
Issue -
State: open - Opened by Yenaled about 1 year ago
Labels: enhancement
#72 - Dev -> main
Pull Request -
State: closed - Opened by lauraluebbert about 1 year ago
- 1 comment
#71 - gget blast can not restrict by taxonomy
Issue -
State: open - Opened by abearab about 1 year ago
Labels: enhancement
#70 - Download only exons sequence
Issue -
State: closed - Opened by irinatu over 1 year ago
- 1 comment
Labels: enhancement
#69 - Added verbosity argument
Pull Request -
State: closed - Opened by anhchi172 over 1 year ago
#68 - Added verbosity argument
Pull Request -
State: closed - Opened by anhchi172 over 1 year ago
#67 - dev -> main gget gpt with new API endpoint
Pull Request -
State: closed - Opened by lauraluebbert over 1 year ago
#66 - Dev -> main gget gpt
Pull Request -
State: closed - Opened by lauraluebbert over 1 year ago
#65 - Option to reduce verbosity or turn off logging
Issue -
State: closed - Opened by gouinK over 1 year ago
- 4 comments
Labels: enhancement
#64 - Dev
Pull Request -
State: closed - Opened by lauraluebbert over 1 year ago
#63 - Speeding up gget.info by making pdb search mutable
Issue -
State: closed - Opened by mmattano over 1 year ago
- 5 comments
Labels: enhancement
#62 - Alphafold running time
Issue -
State: closed - Opened by almart7 over 1 year ago
- 4 comments
#61 - Change gget search url to useast Ensembl mirror
Issue -
State: closed - Opened by lauraluebbert over 1 year ago
- 2 comments
#60 - Improve 'curl is missing' error for gget ref -d (include link to install instructions)
Issue -
State: closed - Opened by adamrtalbot over 1 year ago
- 3 comments
Labels: enhancement
#58 - Ability to match parameters of BLAST as per the web app
Issue -
State: open - Opened by vkullu over 1 year ago
- 2 comments
Labels: enhancement
#57 - Error in gget setup alphafold: Ignored the following versions that require a different python version...
Issue -
State: closed - Opened by almart7 over 1 year ago
- 6 comments
#56 - gget info should return results that were fetched succesfully, even if one database returns an error
Issue -
State: closed - Opened by lauraluebbert over 1 year ago
- 2 comments
#55 - gget alphafold: RuntimeError: jaxlib version 0.4.1 is newer than and incompatible with jax version 0.3.25. Please update your jax and/or jaxlib packages
Issue -
State: closed - Opened by tsucheta over 1 year ago
- 1 comment
#54 - Update enrichr.md
Pull Request -
State: closed - Opened by DylanLawless over 1 year ago
- 1 comment
#53 - Add lxml package to requirements.txt dependencies
Issue -
State: closed - Opened by lvbauer over 1 year ago
- 1 comment
#52 - [gget_alphafold] - Feature Request - Add an option to submit a MSA instead of a protein sequence
Issue -
State: open - Opened by kchennen over 1 year ago
- 1 comment
Labels: enhancement
#51 - AttributeError: module 'psutil' has no attribute 'Process'
Issue -
State: closed - Opened by najibveto over 1 year ago
- 5 comments
#50 - Dev -> main Updating gget alphafold to match recent changes by Deepmind
Pull Request -
State: closed - Opened by lauraluebbert over 1 year ago
#49 - gget alphafold: Add option to define jackhmmer save directory
Issue -
State: open - Opened by lauraluebbert over 1 year ago
Labels: enhancement
#48 - Dev -> main
Pull Request -
State: closed - Opened by lauraluebbert over 1 year ago
#47 - Setting up gget website
Pull Request -
State: closed - Opened by lauraluebbert over 1 year ago
#46 - Jupyter Notebook Kernel Dies When Using gget alphafold
Issue -
State: closed - Opened by tmileur over 1 year ago
- 3 comments
#45 - Add Uniprot localisation data
Issue -
State: closed - Opened by Nusob888 over 1 year ago
- 3 comments
Labels: enhancement
#44 - Error detecting openmm
Issue -
State: closed - Opened by LalitNM almost 2 years ago
- 14 comments
#43 - AlphaFold Multimer
Issue -
State: closed - Opened by epkumpu almost 2 years ago
- 4 comments
#42 - dev -> main gget pdb
Pull Request -
State: closed - Opened by lauraluebbert almost 2 years ago
- 1 comment
#41 - Keyerror: "0000:query"
Issue -
State: closed - Opened by sharzil1994 almost 2 years ago
- 5 comments
#40 - Updated alphafold output to include pLDDT
Pull Request -
State: closed - Opened by lauraluebbert almost 2 years ago
#38 - pdb module
Issue -
State: closed - Opened by sbliven almost 2 years ago
- 2 comments
Labels: enhancement
#37 - openmm=7.5.1 is no longer available from conda-forge.
Issue -
State: closed - Opened by ahwchemistry almost 2 years ago
- 2 comments
#36 - Fails to depict and answer the polymeric forms
Issue -
State: closed - Opened by Harpreet525 almost 2 years ago
- 4 comments
#35 - AlphaFold model parameters download error
Issue -
State: closed - Opened by EvoEpi almost 2 years ago
- 3 comments
#34 - Frozen terminal
Issue -
State: closed - Opened by lt11 almost 2 years ago
- 1 comment
#33 - Error running alphafold
Issue -
State: closed - Opened by xinyangbing almost 2 years ago
- 5 comments