Ecosyste.ms: Issues

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GitHub / pBFSLab/DeepPrep issues and pull requests

#102 - Fails while running `bold_wf:bold_get_bold_file_in_bids` and `anat_wf:anat_get_t1w_file_in_bids`

Issue - State: open - Opened by favour-nerrise 8 months ago - 12 comments
Labels: bug, question

#101 - CHG: update the threads for mris_sphere

Pull Request - State: closed - Opened by NingAnMe 8 months ago

#100 - Questions about output

Issue - State: closed - Opened by tao-yiyan 8 months ago - 1 comment

#99 - NEW: add more env check

Pull Request - State: closed - Opened by NingAnMe 8 months ago

#98 - CHG: update the bold_preprocess start time

Pull Request - State: closed - Opened by NingAnMe 8 months ago

#97 - Fix redis

Pull Request - State: closed - Opened by NingAnMe 9 months ago

#96 - Change gdown id

Pull Request - State: closed - Opened by feilong 9 months ago - 1 comment

#95 - I'm very interested to try this. Have you considered..

Issue - State: open - Opened by nimzodisaster 9 months ago - 6 comments
Labels: enhancement

#94 - CHG: change the process memory usage

Pull Request - State: closed - Opened by NingAnMe 9 months ago

#92 - CHG: change AFNI from 23 to 24

Pull Request - State: closed - Opened by NingAnMe 9 months ago

#91 - NEW: add gpu schedule with memory check

Pull Request - State: closed - Opened by NingAnMe 9 months ago

#90 - CHG: change the cpu num for deepprep process

Pull Request - State: closed - Opened by NingAnMe 9 months ago

#89 - CHG: update the link of test sample and sif

Pull Request - State: closed - Opened by Ireneyou33 9 months ago

#88 - CHG: update AWS process

Pull Request - State: closed - Opened by Ireneyou33 9 months ago

#87 - CHG: delete SUGAR/featreg

Pull Request - State: closed - Opened by NingAnMe 9 months ago

#86 - CHG: change the read path for nextflow log

Pull Request - State: closed - Opened by NingAnMe 9 months ago

#85 - CHG: change the log for gpu and cpu run

Pull Request - State: closed - Opened by NingAnMe 9 months ago

#84 - CHG: change all path to val in deepprep.nf

Pull Request - State: closed - Opened by NingAnMe 9 months ago

#83 - CHG: AFNI 23 to 24

Pull Request - State: closed - Opened by NingAnMe 9 months ago

#82 - CHG: update processing.rst outputs.rst

Pull Request - State: closed - Opened by Ireneyou33 9 months ago

#81 - NEW: run with docker

Pull Request - State: closed - Opened by NingAnMe 9 months ago

#80 - CHG: modify logo size

Pull Request - State: closed - Opened by Ireneyou33 9 months ago

#79 - CHG: replace png by svg

Pull Request - State: closed - Opened by Ireneyou33 9 months ago

#78 - NEW:Delate compute_capability parameter.

Pull Request - State: closed - Opened by lincong8722 9 months ago

#77 - svg main fig

Pull Request - State: closed - Opened by Ireneyou33 9 months ago

#76 - CHG: rm png

Pull Request - State: closed - Opened by Ireneyou33 9 months ago

#75 - CHG: modify format

Pull Request - State: closed - Opened by Ireneyou33 9 months ago

#74 - 更新了report输出部分

Pull Request - State: closed - Opened by Sasori-Sun 10 months ago

#73 - Fd debug

Pull Request - State: closed - Opened by lincong8722 10 months ago

#72 - FIX: add fieldmap.svg

Pull Request - State: closed - Opened by NingAnMe 10 months ago

#71 - NEW: for PBS HCP

Pull Request - State: closed - Opened by NingAnMe 10 months ago

#70 - Debug process

Pull Request - State: closed - Opened by NingAnMe 10 months ago

#69 - NEW: add bids validator

Pull Request - State: closed - Opened by Ireneyou33 10 months ago

#68 - Bids validate

Pull Request - State: closed - Opened by Ireneyou33 10 months ago

#67 - CHG: args bold_template change to bold_volume

Pull Request - State: closed - Opened by NingAnMe 10 months ago

#66 - Nextflow

Pull Request - State: closed - Opened by NingAnMe 10 months ago

#65 - CHG: change usage of deepprep_path

Pull Request - State: closed - Opened by NingAnMe 10 months ago

#64 - DEBUG:Modify the error in bold_sdc parameter passing

Pull Request - State: closed - Opened by lincong8722 10 months ago

#63 - NEW:Split synthmorph_apply pipeline

Pull Request - State: closed - Opened by lincong8722 10 months ago

#62 - CHG: change single to double. VRAM >= 12 GB

Pull Request - State: closed - Opened by NingAnMe 10 months ago

#61 - NEW: update deepprep for local and cluster

Pull Request - State: closed - Opened by NingAnMe 10 months ago

#60 - NEW: update the dockerfile for v23.0.27

Pull Request - State: closed - Opened by NingAnMe 10 months ago

#59 - FIX: --fs_license_file not valid

Pull Request - State: closed - Opened by NingAnMe 10 months ago

#58 - Nextflow

Pull Request - State: closed - Opened by Ireneyou33 10 months ago

#57 - Nextflow

Pull Request - State: closed - Opened by Ireneyou33 10 months ago

#56 - NEW:Optimize the memory usage of bold_apply part

Pull Request - State: closed - Opened by lincong8722 10 months ago

#55 - Debug label

Pull Request - State: closed - Opened by NingAnMe 10 months ago

#54 - Deepprep cmd update

Pull Request - State: closed - Opened by NingAnMe 10 months ago

#53 - NEW:add mriqc process option

Pull Request - State: closed - Opened by Sasori-Sun 10 months ago

#52 - NEW:Added GPU compute-capability parameter options

Pull Request - State: closed - Opened by lincong8722 10 months ago

#51 - Installation

Pull Request - State: closed - Opened by Ireneyou33 10 months ago

#50 - Docs

Pull Request - State: closed - Opened by Sasori-Sun 10 months ago

#49 - Docs

Pull Request - State: closed - Opened by Sasori-Sun 10 months ago

#48 - DEBUG:Modify TR information and bold2t1w_init parameters

Pull Request - State: closed - Opened by lincong8722 10 months ago

#47 - DEBUG:Modify TR information

Pull Request - State: closed - Opened by lincong8722 10 months ago

#46 - FIX: QC report yml order error

Pull Request - State: closed - Opened by NingAnMe 10 months ago

#45 - FIX: debug the figure coping error

Pull Request - State: closed - Opened by NingAnMe 10 months ago

#43 - DEBUG: bold_pre_process param join

Pull Request - State: closed - Opened by Ireneyou33 10 months ago

#42 - DEBUG:debug qc_anat_create_report

Pull Request - State: closed - Opened by Sasori-Sun 10 months ago

#41 - Add code to copy the fsaverage folder

Pull Request - State: closed - Opened by lincong8722 10 months ago

#40 - Aseg to aparc aseg

Pull Request - State: closed - Opened by NingAnMe 10 months ago

#39 - CHG:QC report

Pull Request - State: closed - Opened by Sasori-Sun 10 months ago

#38 - Qc plot report

Pull Request - State: closed - Opened by Sasori-Sun 10 months ago

#37 - Qc plot report

Pull Request - State: closed - Opened by Sasori-Sun 10 months ago

#36 - Revert "NEW:add space template qc plot,save qc report"

Pull Request - State: closed - Opened by NingAnMe 10 months ago

#35 - NEW:add space template qc plot,save qc report

Pull Request - State: closed - Opened by Sasori-Sun 10 months ago

#34 - Modify Synthmorph

Pull Request - State: closed - Opened by lincong8722 10 months ago

#33 - CHG: modified directory

Pull Request - State: closed - Opened by Ireneyou33 10 months ago

#32 - Qc plot carpet

Pull Request - State: closed - Opened by Sasori-Sun 10 months ago

#31 - Bold confounds

Pull Request - State: closed - Opened by NingAnMe 11 months ago

#30 - NEW: add mcflirt node result to bold preprocess dir

Pull Request - State: closed - Opened by NingAnMe 11 months ago

#29 - Nextflow

Pull Request - State: closed - Opened by Ireneyou33 11 months ago

#28 - ADD: Bold confounds

Pull Request - State: closed - Opened by NingAnMe 11 months ago

#27 - move figures

Pull Request - State: closed - Opened by Ireneyou33 11 months ago

#26 - move figures

Pull Request - State: closed - Opened by Ireneyou33 11 months ago

#23 - ADD dataset_description.json && FIX: the bug for fieldmap

Pull Request - State: closed - Opened by NingAnMe 11 months ago

#22 - ADD: generate wm, gm, csf probseg in bold_anat_prepare.py

Pull Request - State: closed - Opened by Ireneyou33 11 months ago

#21 - add onnx runtime run on CPU add bold preprocess of FSL

Pull Request - State: closed - Opened by NingAnMe 11 months ago

#19 - merge fp_bold branch

Pull Request - State: closed - Opened by Ireneyou33 11 months ago

#18 - NEW:Supports running DeepPrep on CPU

Pull Request - State: closed - Opened by Sasori-Sun 11 months ago

#17 - CHANGE:run on CPU

Pull Request - State: closed - Opened by Sasori-Sun 11 months ago

#16 - run to Cpu

Pull Request - State: closed - Opened by Sasori-Sun 11 months ago - 1 comment

#14 - NEW: add dataset_description.json created function.

Pull Request - State: closed - Opened by Sasori-Sun 11 months ago

#13 - Nextflow

Pull Request - State: closed - Opened by Sasori-Sun 11 months ago - 1 comment

#12 - NEW:Added preprocess_others step,

Pull Request - State: closed - Opened by Sasori-Sun 11 months ago

#11 - stc, mc & synthmorph res

Pull Request - State: closed - Opened by Ireneyou33 11 months ago

#10 - DEBUG:Change the colorbar file and optimize the tsnr process

Pull Request - State: closed - Opened by lincong8722 11 months ago

#9 - UPDATE:Modify the introduction of report-T1w2MNI152

Pull Request - State: closed - Opened by lincong8722 11 months ago

#8 - UPDATE:Optimize the GPU memory usage of bold applications

Pull Request - State: closed - Opened by lincong8722 11 months ago

#7 - NEW:Add the function of custom subject

Pull Request - State: closed - Opened by lincong8722 11 months ago

#6 - CHG: modified naming rules

Pull Request - State: closed - Opened by Ireneyou33 11 months ago

#5 - DEBUG:Remove lines

Pull Request - State: closed - Opened by lincong8722 11 months ago

#2 - 添加了 vol2surf 功能

Pull Request - State: closed - Opened by lincong8722 11 months ago

#1 - Nextflow

Pull Request - State: closed - Opened by Sasori-Sun 11 months ago - 1 comment