Ecosyste.ms: Issues

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GitHub / oxfordmmm/piezo issues and pull requests

#24 - fix: ensure null calls don't hit _any_ wildcard rules

Pull Request - State: closed - Opened by JeremyWesthead 7 days ago

#23 - Feat/fs starting in promoter

Pull Request - State: closed - Opened by JeremyWesthead 2 months ago

#22 - docs: minor updates to BNF to include epistasis

Pull Request - State: closed - Opened by JeremyWesthead 5 months ago

#21 - Fix/stop nulls hitting defaults

Pull Request - State: closed - Opened by JeremyWesthead 7 months ago

#20 - docs: update nomenclature docs to reflect syntax

Pull Request - State: closed - Opened by JeremyWesthead 8 months ago

#19 - fix: ensure that null calls can't hit default rules

Pull Request - State: closed - Opened by JeremyWesthead 8 months ago

#18 - Fix/ensure epistasis

Pull Request - State: closed - Opened by JeremyWesthead 11 months ago

#17 - Fix/minor default

Pull Request - State: closed - Opened by JeremyWesthead 11 months ago

#16 - fix: ensure wildcard ins rows don't give predictions for dels

Pull Request - State: closed - Opened by JeremyWesthead 11 months ago - 1 comment

#15 - Feat/epistasis rules

Pull Request - State: closed - Opened by JeremyWesthead 11 months ago - 1 comment

#14 - Additions to enable type checking of this as an import

Pull Request - State: closed - Opened by JeremyWesthead over 1 year ago

#13 - Style/black ruff

Pull Request - State: closed - Opened by JeremyWesthead over 1 year ago

#12 - Feat/add evidence

Pull Request - State: closed - Opened by JeremyWesthead over 1 year ago

#11 - add logic so large deletions return a result

Issue - State: open - Opened by philipwfowler over 1 year ago - 2 comments

#10 - Added treating of `mixed` calls the same as `indel` calls

Pull Request - State: closed - Opened by JeremyWesthead over 1 year ago

#9 - Cicd docs

Pull Request - State: closed - Opened by JeremyWesthead over 1 year ago

#8 - Large deletions

Pull Request - State: closed - Opened by JeremyWesthead over 1 year ago

#7 - Various test improvements. Now at 100% coverage + marking verbose fla…

Pull Request - State: closed - Opened by JeremyWesthead almost 2 years ago

#6 - `predict` method working consistently for mutations which permit minor populations

Issue - State: open - Opened by philipwfowler almost 2 years ago

#5 - Add minor populations

Pull Request - State: closed - Opened by JeremyWesthead almost 2 years ago

#4 - Update documentation

Pull Request - State: closed - Opened by JeremyWesthead over 2 years ago

#3 - Add multiple mutations

Pull Request - State: closed - Opened by JeremyWesthead over 2 years ago

#2 - Develop

Pull Request - State: closed - Opened by philipwfowler over 2 years ago

#1 - SNPs with wildcard values fail to be recognised within piezo-predict.py

Issue - State: closed - Opened by JeremyWesthead over 3 years ago - 1 comment