oschwengers/referenceseeker issues and pull requests

#30 - [BUG] ERROR: failed to execute Mash!

Issue - State: closed - Opened by augustkx about 2 months ago - 1 comment
Labels: bug

#29 - GTDB last update

Issue - State: open - Opened by GuilhemRoyer 7 months ago - 6 comments
Labels: enhancement

#28 - Database update

Issue - State: closed - Opened by MostafaYA about 1 year ago - 3 comments
Labels: enhancement

#27 - no conda install for Apple Silicon

Issue - State: open - Opened by nick-youngblut over 1 year ago - 1 comment
Labels: bug

#26 - Finding a suitable reference for a set of genomes

Issue - State: open - Opened by MostafaYA almost 3 years ago - 3 comments
Labels: enhancement

#25 - [BUG] I can't make a custom db with referenceseeker_db init

Issue - State: closed - Opened by drelo almost 3 years ago - 2 comments
Labels: help wanted

#24 - Add a sliding window parameter for the DNA fragment creation

Issue - State: closed - Opened by oschwengers about 3 years ago
Labels: enhancement

#23 - ReferenceSeeker and Metagenome-Assembled Genomes

Issue - State: closed - Opened by padbc over 3 years ago - 2 comments
Labels: enhancement

#22 - [Question] Using ReferenceSeeker to cluster draft fungal genomes

Issue - State: closed - Opened by Rob-murphys over 3 years ago - 10 comments

#21 - Seemingly successful ReferenceSeeker run with no results.

Issue - State: closed - Opened by Rob-murphys over 3 years ago - 8 comments
Labels: help wanted

#20 - ERROR: database file (db.tsv) not readable! on custom database

Issue - State: closed - Opened by Rob-murphys almost 4 years ago - 3 comments
Labels: help wanted

#19 - <NA/> is being added to the start of file path

Issue - State: closed - Opened by Rob-murphys almost 4 years ago - 4 comments
Labels: bug

#18 - Pre-built databases for other RefSeq sections

Issue - State: closed - Opened by Benjamin-Lee almost 4 years ago - 2 comments
Labels: question

#17 - rename application entry module

Pull Request - State: closed - Opened by oschwengers almost 4 years ago

#16 - Fix tests

Pull Request - State: closed - Opened by oschwengers almost 4 years ago
Labels: enhancement

#15 - Reduce DB sizes

Issue - State: closed - Opened by oschwengers almost 4 years ago
Labels: enhancement

#14 - Provide prebuilt GTDB databases

Issue - State: closed - Opened by oschwengers almost 4 years ago
Labels: enhancement

#13 - [BUG] IndexError: list index out of range

Issue - State: closed - Opened by Jwebster89 about 4 years ago - 1 comment
Labels: bug

#12 - Debugging output with "base dir" and "share dir"

Issue - State: closed - Opened by standage almost 5 years ago - 1 comment
Labels: bug

#11 - Support for importing protein sequences

Pull Request - State: closed - Opened by standage almost 5 years ago - 7 comments

#10 - Add internal checks during custom db creation

Issue - State: closed - Opened by oschwengers almost 5 years ago
Labels: enhancement

#9 - Empty results for a custom built DB

Issue - State: closed - Opened by erelior almost 5 years ago - 3 comments

#8 - [BUG] Updating database script errors

Issue - State: closed - Opened by samlhao almost 5 years ago - 2 comments
Labels: bug

#7 - introduce database init and import features #6

Pull Request - State: closed - Opened by oschwengers about 5 years ago

#6 - Feature request: ability to include private data

Issue - State: closed - Opened by standage about 5 years ago - 3 comments

#5 - Continuous integration