oschwengers/platon issues and pull requests

#47 - Platon for long-read contigs?

Issue - State: closed - Opened by ranitori 5 months ago - 2 comments

#46 - "Marker protein search failed!" error after execution

Issue - State: open - Opened by alex-trist 7 months ago - 9 comments
Labels: help wanted

#45 - Marker protein search failed! and ERROR - MAIN - diamond execution failed! diamond-error-code=-11

Issue - State: closed - Opened by bayraktar1 7 months ago - 3 comments
Labels: help wanted

#44 - Error: No module named 'platon.platon' As #21

Issue - State: closed - Opened by bielGarcias 8 months ago
Labels: bug

#43 - diamond version

Issue - State: closed - Opened by Dabiguina94 10 months ago - 2 comments
Labels: help wanted

#42 - Candidate Release v1.7.0

Pull Request - State: closed - Opened by oschwengers about 1 year ago

#41 - execution problem

Issue - State: closed - Opened by kimTina321 about 1 year ago - 3 comments
Labels: help wanted

#40 - Option to see the 'hits' in the results

Issue - State: closed - Opened by lorcan1601 over 1 year ago - 1 comment
Labels: enhancement

#39 - Any plans for enabling user to use custom database like COMPASS

Issue - State: open - Opened by Rohit-Satyam over 1 year ago - 1 comment
Labels: enhancement

#38 - Strange output - is it normal?

Issue - State: closed - Opened by Gian77 over 1 year ago - 2 comments
Labels: help wanted

#37 - Where can we find version of the RefSeq plasmid database used?

Issue - State: closed - Opened by mdiricks over 1 year ago - 1 comment
Labels: enhancement

#36 - genome fasta file UNRECOGNIZED

Issue - State: closed - Opened by RightCake1 almost 2 years ago - 5 comments
Labels: help wanted

#35 - IndexError: list index out of range error

Issue - State: closed - Opened by hbucqp about 2 years ago - 1 comment
Labels: help wanted

#34 - Platon report Mobilization and Conjugation

Issue - State: closed - Opened by elina2410 over 2 years ago - 2 comments
Labels: help wanted

#33 - minor typo in readme Description section

Pull Request - State: closed - Opened by franciscozorrilla over 2 years ago

#32 - Trouble testing on chromosomes

Issue - State: closed - Opened by Liqueurdefehling over 2 years ago - 9 comments
Labels: help wanted

#31 - RDS is always 0.0

Issue - State: open - Opened by barbaracania over 2 years ago - 7 comments
Labels: help wanted

#30 - --meta missing

Issue - State: closed - Opened by pbelmann over 2 years ago - 2 comments
Labels: help wanted

#29 - Differences between .log and plasmid.fasta file

Issue - State: closed - Opened by tthye1 over 2 years ago - 3 comments
Labels: help wanted

#28 - The number of contigs in plasmid.fasta is not the same as the number of contigs in .tsv

Issue - State: closed - Opened by xuanji2017 over 2 years ago - 3 comments
Labels: bug

#27 - Permission denied: 'prodigal'

Issue - State: closed - Opened by zhichusun over 2 years ago - 1 comment

#26 - Blast contig results

Issue - State: closed - Opened by tthye1 almost 3 years ago - 7 comments
Labels: enhancement

#25 - Platon is Time-Intensive

Issue - State: closed - Opened by joshuakirsch almost 3 years ago - 4 comments
Labels: question

#24 - Interpretation of results

Issue - State: closed - Opened by franciscozorrilla almost 3 years ago - 1 comment
Labels: question

#23 - Running multiple samples

Issue - State: closed - Opened by mmfacun almost 3 years ago - 2 comments
Labels: enhancement

#22 - ERROR: database file (orit.nhr) not readable!

Issue - State: closed - Opened by alexlevylab over 3 years ago - 2 comments
Labels: help wanted

#21 - Error: No module named 'platon.platon'

Issue - State: closed - Opened by androga2 over 3 years ago - 1 comment
Labels: bug

#20 - Issue updating Platon v1.6

Issue - State: closed - Opened by Dey497 over 3 years ago - 4 comments
Labels: bug

#19 - Plasmid verification

Issue - State: closed - Opened by Handymanalan over 3 years ago - 4 comments

#18 - Should all plasmids really have OriT sequences?

Issue - State: closed - Opened by KTbiotech over 3 years ago - 2 comments
Labels: help wanted

#17 - result are all plasmids

Issue - State: closed - Opened by Wanli-HE over 3 years ago - 2 comments
Labels: help wanted

#16 - Error occurs while trying to run Platon

Issue - State: closed - Opened by Rajeefa over 3 years ago - 9 comments

#15 - ERROR: genome file not readable!

Issue - State: closed - Opened by Dey497 almost 4 years ago - 2 comments
Labels: bug

#14 - platon: error: unrecognized arguments: assembly.fasta

Issue - State: closed - Opened by ZhangDengwei almost 4 years ago - 3 comments

#13 - Incorporate latest RefSeq Reference Plasmid database files

Issue - State: closed - Opened by tdcollingsworth about 4 years ago - 3 comments
Labels: enhancement

#12 - Marker protein search failed!

Issue - State: closed - Opened by Wanli-HE about 4 years ago - 8 comments
Labels: bug

#11 - Known plasmid genes detected in the chromosome

Issue - State: closed - Opened by Clabe1986 about 4 years ago - 5 comments

#10 - ERROR - diamond execution failed! diamond-error-code=-4

Issue - State: closed - Opened by clabe-wekesa about 4 years ago - 8 comments

#9 - automatically recognise db_path with conda installation

Issue - State: closed - Opened by noeldjitro about 4 years ago - 1 comment
Labels: enhancement

#8 - Platon can not get ORF id

Issue - State: closed - Opened by chen1i6c04 over 4 years ago - 4 comments
Labels: bug

#7 - Allow specification of output file prefix (not just path)

Issue - State: closed - Opened by crarlus over 4 years ago - 3 comments
Labels: enhancement

#6 - Problem with running short plasmid sequences

Issue - State: closed - Opened by crarlus over 4 years ago - 4 comments

#5 - switch to https://schema.org/version/latest/schema.rdf

Pull Request - State: closed - Opened by mr-c over 4 years ago - 2 comments

#4 - database file (rds.tsv) not readable

Issue - State: closed - Opened by Lneffe over 4 years ago - 13 comments
Labels: bug

#3 - Revise cwl file

Pull Request - State: closed - Opened by patrick-barth over 4 years ago

#2 - Merge Update to UniProt's Uniref90 protein clusters

Pull Request - State: closed - Opened by oschwengers over 4 years ago

#1 - Error running the package

Issue - State: closed - Opened by pavlo888 about 5 years ago - 8 comments
Labels: bug

GitHub / oschwengers/platon issues and pull requests