orobix/retina-unet issues and pull requests

#94 - semi-supervised learning

Issue - State: open - Opened by scyqz3 10 months ago

#93 - Any subsequent image repair work

Issue - State: open - Opened by Yilp almost 2 years ago

#92 - Trouble with model architecture

Issue - State: open - Opened by Mr-Akbari almost 2 years ago - 1 comment

#91 - updated code

Pull Request - State: open - Opened by ashishbhaskar11 about 2 years ago

#90 - Process finished with exit code -1073740791 (0xC0000409)

Issue - State: open - Opened by Young-Edwards over 2 years ago - 1 comment

#89 - Why i am getting less performance than yours?

Issue - State: open - Opened by AliSaeed86 almost 3 years ago

#88 - For those who are interested in the theoretical part of this code... the article's title of this code is "Retina Blood Vessel Segmentation Using A U-Net Based Convolutional Neural Network".

Issue - State: closed - Opened by AliSaeed86 about 3 years ago

#87 - please help "ImportError: No module named visualize_util

Issue - State: open - Opened by tphankr about 3 years ago

#86 - How to python run_training.py ?

Issue - State: open - Opened by tphankr about 3 years ago

#85 - version

Issue - State: open - Opened by Fanthers about 3 years ago

#84 - how to create overlapping patches from images

Issue - State: open - Opened by aditya240788 over 3 years ago

#83 - ImportError: cannot import name 'jaccard_similarity_score'

Issue - State: open - Opened by SGD822 over 3 years ago - 1 comment

#82 - TypeError: float() argument must be a string or a number, not 'TiffImageFile'

Issue - State: closed - Opened by zhaoxfan98 almost 4 years ago - 2 comments

#81 - Keras and tf version

Issue - State: open - Opened by margauxtornqvist over 4 years ago - 2 comments

#80 - how to train on my own database

Issue - State: open - Opened by manvirvirk over 4 years ago - 1 comment

#79 - how to train on other database?

Issue - State: open - Opened by manvirvirk over 4 years ago

#78 - can't find sample_input_imgs

Issue - State: closed - Opened by tingfengwanxiao over 4 years ago

#77 - Could not get the files after running training code

Issue - State: open - Opened by boba1234 over 4 years ago - 3 comments

#76 - Why is there no 1st_manual and 2nd_manual under test file after I download the DIRVE?

Issue - State: open - Opened by shanhong-liu almost 5 years ago - 4 comments

#75 - only the configuration.txt file is available in the resulting test folder

Issue - State: open - Opened by shubashri123 about 5 years ago

#74 - Produce the segmentation for a whole image.

Issue - State: open - Opened by AlaaSulaiman about 5 years ago

#73 - Assertion Error

Issue - State: open - Opened by MaleehaKhan about 5 years ago - 3 comments

#72 - I really doubt the evaluation metric auc curve is not favorable?

Issue - State: open - Opened by zhangrong1722 about 5 years ago - 1 comment

#71 - The model is not trainable

Issue - State: open - Opened by kingman1980 about 5 years ago

#70 - How to do test_border_masks of STARE

Issue - State: open - Opened by Liuyu04 about 5 years ago

#69 - What kind of upsamling is used here

Issue - State: open - Opened by anitstanly about 5 years ago

#68 - error about data_format

Issue - State: open - Opened by Liuyu04 about 5 years ago

#67 - errors in Windows+tensorflow_GPU environment

Issue - State: open - Opened by IronLavender over 5 years ago - 3 comments

#66 - Prediction of a general fundus image from hospital

Issue - State: open - Opened by anitstanly over 5 years ago - 3 comments

#65 - Training taking too long

Issue - State: open - Opened by gcarnielli over 5 years ago - 2 comments

#64 - Try binary

Pull Request - State: closed - Opened by jannessm over 5 years ago

#63 - a question about building the net

Issue - State: open - Opened by hujianhang2996 over 5 years ago

#62 - AttributeError: module 'tensorflow' has no attribute 'python'

Issue - State: open - Opened by abidhaque over 5 years ago - 1 comment

#61 - Please Specify Keras and TF versions

Issue - State: open - Opened by GGDRriedel over 5 years ago - 2 comments

#60 - Annotation tool used?

Issue - State: open - Opened by matsujju almost 6 years ago - 3 comments

#59 - concatenate axis=1

Issue - State: open - Opened by RainLKP almost 6 years ago

#58 - share data

Issue - State: open - Opened by lthngan almost 6 years ago

#57 - when excute the run_testing.py ,i have a problem,it said ======== Evaluate the results ======================= Calculating results only inside the FOV: y scores pixels: 2429685 (radius 270: 2702703.14==228906), including background around retina: 6599200 (584565==329960) y true pixels: 2429685 (radius 270: 2702703.14==228906), including background around retina: 6599200 (584565==329960) Traceback (most recent call last): File "./src/retinaNN_predict.py", line 183, in <module> precision, recall, thresholds = precision_recall_curve(y_true, y_scores) File "/home/liushixin/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py", line 441, in precision_recall_curve sample_weight=sample_weight) File "/home/liushixin/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py", line 318, in _binary_clf_curve raise ValueError("{0} format is not supported".format(y_type)) ValueError: continuous format is not supported

Issue - State: closed - Opened by ruda0214 almost 6 years ago - 2 comments

#56 - can not work under win system

Issue - State: open - Opened by kingman1980 almost 6 years ago

#55 - ValueError: Unknown layer: Merge

Issue - State: open - Opened by YonatanSimson about 6 years ago - 3 comments

#54 - Drive no average

Pull Request - State: closed - Opened by SiqiHuang18 about 6 years ago - 1 comment

#53 - 3D images and channel 1

Issue - State: open - Opened by Pmac23 about 6 years ago

#52 - Memory error

Issue - State: open - Opened by Pmac23 over 6 years ago - 1 comment

#51 - spelling change

Pull Request - State: closed - Opened by bgth over 6 years ago - 1 comment

#50 - U-net Architecture of expansion path

Issue - State: open - Opened by AllBecomesGood over 6 years ago - 1 comment

#49 - Prediction for a single image

Issue - State: open - Opened by threefivehill over 6 years ago

#48 - Update retinaNN_training.py

Pull Request - State: closed - Opened by pronot over 6 years ago

#47 - Update retinaNN_training.py

Pull Request - State: closed - Opened by pronot over 6 years ago

#46 - Update keras code

Issue - State: open - Opened by pyaf over 6 years ago - 2 comments

#45 - Why did you use "softmax" and "categorical_crossentropy"?

Issue - State: open - Opened by Kevin-Moon over 6 years ago - 4 comments

#44 - Update extract_patches.py

Pull Request - State: closed - Opened by werdes72 over 6 years ago

#43 - Is your maxpooling layer wrong?

Issue - State: open - Opened by eliottbrion over 6 years ago - 2 comments

#42 - RGB vs Grayscale

Issue - State: open - Opened by gregunz almost 7 years ago - 1 comment

#41 - what is masks_Unet in line 190 of retinaNN_training.py

Issue - State: open - Opened by zhudaoruyi almost 7 years ago - 1 comment

#40 - ImportError: cannot import name concatenate

Issue - State: open - Opened by doantientai almost 7 years ago - 2 comments

#39 - Dimension 1 in both shapes must be equal, but are 12 and 24 for 'merge_1/concat'

Issue - State: open - Opened by pontikos almost 7 years ago - 4 comments

#38 - ValueError: CorrMM images and kernel must have the same stack size

Issue - State: open - Opened by skiyDev about 7 years ago

#37 - The code has dim mismatching problem

Issue - State: open - Opened by lauranceair about 7 years ago

#36 - TypeError: Expected int32, got list containing Tensors of type '_Message' instead.

Issue - State: open - Opened by ch977 about 7 years ago - 2 comments

#35 - Updated U-net model to be compatible with Keras 2.0

Pull Request - State: closed - Opened by GlastonburyC about 7 years ago

#34 - nohup: ignoring input and redirecting stderr to stdout

Issue - State: closed - Opened by anuragdeshmukh about 7 years ago - 1 comment

#33 - uncertainty of label

Issue - State: closed - Opened by Cherry2410 about 7 years ago

#32 - run 'python run_training.py' error

Issue - State: closed - Opened by rockywind over 7 years ago - 2 comments

#31 - ValueError: "concat" mode can only merge layers with matching output shapes except for the concat axis. Layer shapes: [(None, 0, 24, 128), (None, 0, 24, 64)]

Issue - State: closed - Opened by baodingge over 7 years ago - 4 comments

#30 - Fix for non existing data set path

Pull Request - State: closed - Opened by sumsuddin over 7 years ago

#29 - prepare_datasets_DRIVE.py does not create the dataset_path if does not exist

Issue - State: closed - Opened by sumsuddin over 7 years ago

#28 - Incompatible with Keras 2

Issue - State: closed - Opened by sumsuddin over 7 years ago - 4 comments

#27 - Error when checking model target: expected activation_1 to have 3 dimensions, but got array with shape (30, 1, 160, 160)

Issue - State: closed - Opened by saeedalahmari3 over 7 years ago - 2 comments

#26 - TypeError: init() got an unexpected keyword argument 'input_dtype'

Issue - State: open - Opened by PiceLao over 7 years ago - 2 comments

#25 - UpSampling2D (mode='Concat' issue

Issue - State: closed - Opened by saeedalahmari3 over 7 years ago - 1 comment

#24 - something strange...I delete the "reshape"

Issue - State: closed - Opened by Bonsen over 7 years ago - 1 comment

#23 - BugReport: hard-coded with patchsize

Issue - State: closed - Opened by pythonokai over 7 years ago - 1 comment

#22 - Data output

Issue - State: closed - Opened by Cherry2410 over 7 years ago - 4 comments

#21 - If dividing pic into many N_subimgs is better than using whole pic to train?

Issue - State: closed - Opened by Bonsen over 7 years ago - 3 comments

#20 - Can't visit DRIVE website

Issue - State: closed - Opened by Bonsen over 7 years ago - 4 comments

#19 - Equation used in `is_patch_inside_FOV` function

Issue - State: closed - Opened by jain-anshul over 7 years ago - 4 comments

#18 - prepare_datasets_DRIVE.py

Issue - State: closed - Opened by vdfbb over 7 years ago

#17 - minimum requirements

Issue - State: open - Opened by saeedami over 7 years ago - 1 comment

#16 - regarding the values of prediction

Issue - State: open - Opened by wenouyang over 7 years ago

#15 - RuntimeError: Cuda error: k_copy_4d: invalid device function.

Issue - State: open - Opened by arasharchor over 7 years ago - 1 comment

#14 - the loss plot for running the program on a given data set

Issue - State: open - Opened by wenouyang over 7 years ago - 3 comments

#13 - Regarding using this solution to solve another type of semantic segmentation problem

Issue - State: closed - Opened by wenouyang over 7 years ago - 5 comments

#12 - Data Augmentation

Issue - State: open - Opened by ccccly almost 8 years ago - 1 comment

#11 - Exception: "concat" mode can only merge layers with matching output shapes except for the concat axis.

Issue - State: closed - Opened by ccccly almost 8 years ago - 1 comment

#10 - Added new network gnet

Pull Request - State: closed - Opened by pythonokai almost 8 years ago

#9 - What means different model/parameters achieve higher score?

Issue - State: closed - Opened by pythonokai almost 8 years ago - 2 comments

#8 - results of different experiments?

Issue - State: open - Opened by martinbel almost 8 years ago - 3 comments

#7 - Is the 'random extracting' cause the different testing result?

Issue - State: closed - Opened by pythonokai almost 8 years ago - 2 comments

#6 - Filter size error

Issue - State: closed - Opened by ilknuricke almost 8 years ago - 4 comments

#5 - Adapted to windows

Pull Request - State: closed - Opened by pythonokai about 8 years ago - 1 comment

#4 - Validation data

Issue - State: closed - Opened by dcorti about 8 years ago

#3 - ZeroDivisionError

Issue - State: closed - Opened by pythonokai about 8 years ago - 4 comments

#2 - are the weights available?

Issue - State: closed - Opened by martinbel about 8 years ago - 2 comments

#1 - Getting more done in GitHub with ZenHub

Issue - State: closed - Opened by FarajiMehrdad about 8 years ago

GitHub / orobix/retina-unet issues and pull requests