openworm/tracker-commons issues and pull requests

#176 - Define an `$id` for the JSON schema document

Issue - State: open - Opened by mwatts15 about 4 years ago

#175 - Address Deprecation Warning

Issue - State: open - Opened by cheelee about 5 years ago

#174 - Add pom.xml to scala component

Pull Request - State: open - Opened by imagejan over 6 years ago - 3 comments

#173 - Integration of Production-Ready parts of Repo into the OpenWorm Docker image.

Issue - State: open - Opened by cheelee over 6 years ago
Labels: help wanted

#172 - Support new set of worm features in OWAT

Issue - State: open - Opened by cheelee over 6 years ago
Labels: enhancement, help wanted

#171 - Python wcon pip incompatibility with latest Python 3 pandas

Issue - State: open - Opened by cheelee over 6 years ago - 1 comment
Labels: bug, lang_python

#170 - Python wcon pip possible performance issues

Issue - State: open - Opened by cheelee over 6 years ago - 3 comments
Labels: lang_python

#169 - Python wcon pip package missing wcon_schema.json file.

Issue - State: open - Opened by cheelee over 6 years ago
Labels: bug, lang_python

#168 - Python wcon pip package dependencies not enforced?

Issue - State: open - Opened by cheelee over 6 years ago - 6 comments
Labels: lang_python

#167 - Scala implementation does not always preserve `null` values

Issue - State: open - Opened by Ichoran over 7 years ago

#166 - MWT converter

Pull Request - State: closed - Opened by Ichoran over 7 years ago

#165 - Show logos in README

Issue - State: open - Opened by MichaelCurrie over 7 years ago
Labels: enhancement

#164 - Different metadata in two different chunks

Issue - State: open - Opened by MichaelCurrie over 7 years ago - 1 comment
Labels: question

#163 - Add an optional table of contents for multi-chunk WCON files

Issue - State: open - Opened by MichaelCurrie over 7 years ago - 3 comments
Labels: enhancement

#162 - Python 1.2: "@" units, degrees and radians, dish -> arena, test fixes

Pull Request - State: closed - Opened by MichaelCurrie over 7 years ago

#161 - Provide a place to put converters from other formats

Issue - State: open - Opened by Ichoran over 7 years ago - 1 comment
Labels: enhancement, question

#160 - Provide an easy way to access and write custom data (at least in Scala)

Issue - State: open - Opened by Ichoran over 7 years ago
Labels: enhancement, lang_scala

#159 - Binary data has no obvious way to be embedded or associated with WCON files

Issue - State: open - Opened by Ichoran over 7 years ago - 2 comments
Labels: enhancement

#158 - Events are difficult to annotate

Issue - State: open - Opened by Ichoran over 7 years ago

#157 - Got four basic examples working in Scala.

Pull Request - State: closed - Opened by Ichoran over 7 years ago - 1 comment

#156 - How to stream WCON?

Issue - State: closed - Opened by MichaelCurrie over 7 years ago - 4 comments
Labels: question

#155 - Issue 153

Pull Request - State: closed - Opened by Ichoran over 7 years ago - 3 comments
Labels: in progress

#154 - Improved Create safety and fixed bugs; removed debug print in Data

Pull Request - State: closed - Opened by Ichoran over 7 years ago - 1 comment

#153 - Files specification is too complicated

Issue - State: closed - Opened by Ichoran over 7 years ago - 4 comments
Labels: in progress

#152 - Scala with builders

Pull Request - State: closed - Opened by Ichoran over 7 years ago

#151 - Update JSON-schema meta-schema version

Issue - State: closed - Opened by MichaelCurrie over 7 years ago - 1 comment
Labels: bug

#150 - Updated arena to use "style" instead of "type" for description.

Pull Request - State: closed - Opened by Ichoran almost 8 years ago

#149 - Initial WCON conversion of Sibernetic output file

Pull Request - State: closed - Opened by pgleeson almost 8 years ago - 9 comments
Labels: in progress

#148 - Update Matlab / Octave status

Pull Request - State: closed - Opened by MichaelCurrie almost 8 years ago

#147 - Metadata does not contain an identity for the experiment

Issue - State: open - Opened by Ichoran almost 8 years ago - 7 comments

#146 - Added perimeters to WCON spec, while simplifying some things.

Pull Request - State: closed - Opened by Ichoran almost 8 years ago - 10 comments

#145 - Scala simplified

Pull Request - State: closed - Opened by Ichoran almost 8 years ago

#144 - Move MATLAB doc files

Pull Request - State: closed - Opened by MichaelCurrie almost 8 years ago

#143 - metadata.who - arrayed set of JSON strings (is a string allowable?)

Issue - State: closed - Opened by MichaelCurrie almost 8 years ago - 2 comments

#142 - Worm ID can be a number, but this raises ambiguities

Issue - State: closed - Opened by Ichoran almost 8 years ago - 4 comments

#141 - Create a common set of example programs

Issue - State: open - Opened by Ichoran almost 8 years ago - 2 comments

#140 - Fixed problematic test files and clarified similarity of ox and oy.

Pull Request - State: closed - Opened by Ichoran almost 8 years ago

#139 - Complete tests

Pull Request - State: closed - Opened by Ichoran almost 8 years ago - 2 comments

#138 - Origin specification is complex

Issue - State: closed - Opened by Ichoran almost 8 years ago - 5 comments

#137 - Insufficient rules on custom information to allow data merging

Issue - State: open - Opened by Ichoran almost 8 years ago - 3 comments

#136 - Scala perimeters

Pull Request - State: closed - Opened by Ichoran almost 8 years ago

#135 - Creating WCON-structured data in memory is fiddly

Issue - State: open - Opened by Ichoran almost 8 years ago - 2 comments

#134 - Coordinate transforms are a hassle

Issue - State: open - Opened by Ichoran almost 8 years ago - 6 comments

#133 - Create simplification routine for rendering visualization of worm

Issue - State: closed - Opened by MichaelCurrie almost 8 years ago - 8 comments
Labels: enhancement

#132 - There is no consistent way to specify contour information

Issue - State: open - Opened by Ichoran almost 8 years ago - 11 comments

#131 - Fixed lab code filtering in Scala (needed fix to KSE, so moved to snapshot 0.6).

Pull Request - State: closed - Opened by Ichoran almost 8 years ago

#130 - dish vs arena

Issue - State: closed - Opened by ver228 about 8 years ago - 4 comments

#129 - Matlab: support create from memory, multiple files, and UTF-8

Issue - State: open - Opened by MichaelCurrie about 8 years ago - 1 comment
Labels: question

#128 - unzip to memory for Matlab

Issue - State: open - Opened by JimHokanson about 8 years ago - 1 comment
Labels: enhancement, lang_matlab

#127 - Add a WCONWorms.upload method to upload to Zenodo

Issue - State: closed - Opened by MichaelCurrie over 8 years ago
Labels: enhancement

#126 - First Matlab version merged

Pull Request - State: closed - Opened by JimHokanson over 8 years ago - 3 comments

#125 - Added degrees and radians as units to Scala reader/writer.

Pull Request - State: closed - Opened by Ichoran over 8 years ago - 4 comments

#124 - Changed KSE dependency to a stable version (0.5.0).

Pull Request - State: closed - Opened by Ichoran over 8 years ago

#123 - Scala writing can fail with a MatchError

Issue - State: closed - Opened by Ichoran over 8 years ago - 2 comments

#122 - Update Scala README with correct code example

Pull Request - State: closed - Opened by Ichoran over 8 years ago

#121 - Updated SBT build to latest version of KSE.

Pull Request - State: closed - Opened by Ichoran over 8 years ago

#120 - Scala: sbt isn't picking up the kse package

Issue - State: closed - Opened by ver228 over 8 years ago - 3 comments
Labels: bug

#119 - Load a new WCON

Issue - State: open - Opened by ver228 over 8 years ago - 6 comments
Labels: bug

#118 - Missing Units

Issue - State: closed - Opened by ver228 over 8 years ago - 4 comments
Labels: enhancement

#117 - Updated Tracker-Commons metadata

Pull Request - State: closed - Opened by cheelee over 8 years ago

#116 - Prototype metadata file & Updates to Octave

Pull Request - State: closed - Opened by cheelee over 8 years ago

#115 - kilo prefix

Issue - State: closed - Opened by JimHokanson over 8 years ago - 3 comments
Labels: bug

#114 - scalar multipliers in units

Issue - State: closed - Opened by JimHokanson over 8 years ago - 3 comments
Labels: question

#113 - Create converter for BDML

Issue - State: closed - Opened by MichaelCurrie over 8 years ago - 11 comments
Labels: wontfix

#112 - WCON C/C++

Issue - State: closed - Opened by cheelee over 8 years ago - 3 comments
Labels: enhancement, wontfix, in progress

#111 - Usage examples are minimal / missing

Issue - State: closed - Opened by Ichoran over 8 years ago - 2 comments

#110 - Updated R on main page.

Pull Request - State: closed - Opened by Ichoran over 8 years ago

#109 - Minimal R bindings for the Scala WCON implementation

Pull Request - State: closed - Opened by Ichoran over 8 years ago - 1 comment

#108 - No way to specify contact information

Issue - State: open - Opened by Ichoran over 8 years ago - 3 comments

#107 - Minimal implementation of Java reader that wraps the Scala compatibility layer

Pull Request - State: closed - Opened by Ichoran over 8 years ago - 1 comment

#106 - Compatibility layer for Scala created

Pull Request - State: closed - Opened by Ichoran over 8 years ago

#105 - There should be known results to various computations on test files

Issue - State: closed - Opened by Ichoran over 8 years ago - 2 comments

#104 - Settings appears once in metadata, but each set of software may have its own

Issue - State: closed - Opened by Ichoran over 8 years ago - 3 comments

#103 - Java implementation is missing

Issue - State: closed - Opened by Ichoran over 8 years ago - 1 comment

#102 - Improved discussion of custom features in documentation.

Pull Request - State: closed - Opened by Ichoran almost 9 years ago - 4 comments

#101 - First Partial WCON-Octave Prototype Complete

Pull Request - State: closed - Opened by cheelee almost 9 years ago

#100 - Add Python CI test for the 'offset_' files

Issue - State: closed - Opened by MichaelCurrie almost 9 years ago - 1 comment

#99 - Simplified Scala representation of data is desirable for interfacing

Issue - State: closed - Opened by Ichoran almost 9 years ago - 1 comment

#98 - R implementation is missing

Issue - State: closed - Opened by Ichoran almost 9 years ago - 2 comments

#97 - Cleaned up DataSet parsing.

Pull Request - State: closed - Opened by Ichoran almost 9 years ago

#96 - Scala implementation uses very fast Jsonal parser

Pull Request - State: closed - Opened by Ichoran almost 9 years ago - 1 comment

#95 - Issue 83 - Fix offset / centroid handling in Scala

Pull Request - State: closed - Opened by Ichoran almost 9 years ago - 4 comments

#94 - Custom features

Issue - State: closed - Opened by JimHokanson almost 9 years ago - 4 comments

#93 - Version 1.1.0: ".zip" file extension support + 4 bug fixes

Pull Request - State: closed - Opened by MichaelCurrie almost 9 years ago - 3 comments

#92 - save_to_file doesn't order dictionaries nested from lists

Issue - State: closed - Opened by MichaelCurrie almost 9 years ago - 1 comment

#91 - Cleaned up Scala DataSet parsing a tiny bit.

Pull Request - State: closed - Opened by Ichoran almost 9 years ago

#90 - Scala implementation uses very fast Jsonal parser

Pull Request - State: closed - Opened by Ichoran almost 9 years ago - 1 comment

#89 - Scala jsonal

Pull Request - State: closed - Opened by Ichoran almost 9 years ago - 2 comments

#88 - Python-Side C/C++ wrapper interface codes

Pull Request - State: closed - Opened by cheelee almost 9 years ago - 4 comments

#87 - Possible Bug with add operation in Python, with multiple worms

Issue - State: closed - Opened by cheelee almost 9 years ago - 1 comment

#86 - pip package for wcon missing schema file

Issue - State: closed - Opened by cheelee almost 9 years ago - 1 comment

#85 - Zip file reading and writing.

Pull Request - State: closed - Opened by Ichoran almost 9 years ago - 2 comments

#83 - Scala implementation does not properly handle offsets

Issue - State: closed - Opened by Ichoran almost 9 years ago - 1 comment

#82 - Zip file support should insist on `.zip` as the file name extension

Issue - State: closed - Opened by Ichoran almost 9 years ago - 6 comments

#81 - Detailed setup instructions broken for fresh Ubuntu 14.04 LTS install via Virtualbox

Issue - State: closed - Opened by cheelee almost 9 years ago - 2 comments

#74 - Travis-CI with Octave

Issue - State: closed - Opened by cheelee almost 9 years ago - 6 comments

#69 - Scala implementation should use a proper JSON parser

Issue - State: closed - Opened by Ichoran almost 9 years ago - 2 comments

#59 - Add support for compressed (zipped) WCON files

Issue - State: closed - Opened by MichaelCurrie almost 9 years ago - 9 comments
Labels: enhancement

#50 - Real world WCON example

Issue - State: closed - Opened by JimHokanson almost 9 years ago - 10 comments

#45 - Matlab or Octave should have a full implementation

Issue - State: closed - Opened by Ichoran about 9 years ago - 30 comments

GitHub / openworm/tracker-commons issues and pull requests