Ecosyste.ms: Issues

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GitHub / openworm/open-worm-analysis-toolbox issues and pull requests

#214 - Suzil cleanup/add opencv dependency

Pull Request - State: closed - Opened by mwatts15 almost 5 years ago - 2 comments

#213 - Add opencv-python as a dependency in setup.py

Pull Request - State: closed - Opened by suzil almost 5 years ago - 2 comments

#212 - Integration of Production-Ready Code base with OpenWorm's Docker Image Repo.

Issue - State: open - Opened by cheelee about 6 years ago
Labels: help wanted

#211 - Adding project-wide overview graphic to README

Pull Request - State: open - Opened by gsarma about 6 years ago

#210 - OWAT to generate features from WCON files.

Issue - State: open - Opened by cheelee over 6 years ago - 2 comments
Labels: enhancement, help wanted

#209 - First-time installation issues: can't run video_to_features.py

Issue - State: open - Opened by mfshao over 6 years ago - 5 comments

#208 - First-time installation issues : importing prefeatures error

Issue - State: open - Opened by KyeongMinMOON over 6 years ago - 18 comments

#207 - WCON fixes

Pull Request - State: closed - Opened by MichaelCurrie about 7 years ago - 5 comments
Labels: in progress

#206 - Foraging Amplitude Units

Issue - State: open - Opened by MichaelCurrie over 7 years ago - 4 comments
Labels: bug

#204 - Upload small sample to sandbox.zenodo.org

Issue - State: closed - Opened by MichaelCurrie over 7 years ago - 2 comments

#203 - Convert SIBERNETIC text file to WCON format

Issue - State: closed - Opened by MichaelCurrie over 7 years ago - 1 comment

#202 - Have `WCON demo.py` parse both sides of the worm's contour

Issue - State: open - Opened by MichaelCurrie about 8 years ago - 2 comments
Labels: bug

#201 - Create an aggregate DOI for the whole MRC Schafer corpus?

Issue - State: closed - Opened by MichaelCurrie about 8 years ago - 1 comment
Labels: question

#200 - Interactive query web interface for MRC DB

Issue - State: closed - Opened by MichaelCurrie about 8 years ago - 3 comments

#199 - Updated owat metadata content

Pull Request - State: closed - Opened by cheelee over 8 years ago

#198 - Store WCON files in a MongoDB database?

Issue - State: closed - Opened by MichaelCurrie over 8 years ago - 4 comments
Labels: question

#197 - Save WormFeatures objects in WCON format?

Issue - State: open - Opened by ver228 over 8 years ago - 1 comment
Labels: enhancement

#196 - Prototype metadata file

Pull Request - State: closed - Opened by cheelee over 8 years ago - 2 comments

#195 - Change `eigen_worm_file` path discovery method

Pull Request - State: closed - Opened by ver228 over 8 years ago - 1 comment

#194 - Expand worm database to include multiworm capability

Issue - State: closed - Opened by MichaelCurrie over 8 years ago - 3 comments

#193 - Make AWS database queries accessible via web interface

Issue - State: closed - Opened by MichaelCurrie over 8 years ago - 8 comments

#192 - Upload files to Zenodo tagged with DOI

Issue - State: closed - Opened by MichaelCurrie over 8 years ago - 11 comments

#191 - Populate AWS database with information currently in flat files

Issue - State: closed - Opened by MichaelCurrie over 8 years ago - 6 comments

#190 - Replicate Brown Lab's existing database on AWS

Issue - State: closed - Opened by MichaelCurrie over 8 years ago - 3 comments

#189 - Incorporate SegWorm updates into OWAT

Issue - State: open - Opened by MichaelCurrie over 8 years ago - 3 comments
Labels: enhancement

#188 - Force velocity scale to be an integer

Pull Request - State: closed - Opened by ver228 over 8 years ago - 1 comment

#187 - OpenCV Travis build failing since ~8 April 2016

Issue - State: closed - Opened by MichaelCurrie over 8 years ago - 4 comments
Labels: bug

#186 - OWAT logo

Pull Request - State: closed - Opened by KristianPeltonen over 8 years ago

#185 - Error calculating skeleton from contour

Issue - State: open - Opened by MichaelCurrie over 8 years ago

#184 - PyPI setup.py and version

Pull Request - State: closed - Opened by MichaelCurrie over 8 years ago

#183 - WCON compatibility

Pull Request - State: closed - Opened by MichaelCurrie over 8 years ago

#182 - Visible deprecation messages and duplicated functions

Issue - State: open - Opened by ver228 over 8 years ago - 2 comments

#181 - setup.py file

Pull Request - State: closed - Opened by ver228 over 8 years ago - 1 comment

#180 - What about a setup.py?

Issue - State: closed - Opened by ver228 over 8 years ago - 1 comment

#179 - Missing test file?

Issue - State: closed - Opened by cheelee over 8 years ago - 3 comments
Labels: bug

#178 - Working Installation Script + Mac OS X Instructions

Pull Request - State: closed - Opened by cheelee over 8 years ago - 1 comment

#177 - New directions with refactored code

Issue - State: open - Opened by MichaelCurrie almost 9 years ago - 5 comments
Labels: Ideas

#176 - Stats reorganization

Pull Request - State: closed - Opened by JimHokanson almost 9 years ago - 1 comment

#175 - Unnecessary lines in INSTALL?

Issue - State: closed - Opened by MichaelCurrie almost 9 years ago - 1 comment
Labels: question

#174 - Avelino stats code corrections

Pull Request - State: closed - Opened by MichaelCurrie almost 9 years ago

#173 - Refactoring name

Pull Request - State: closed - Opened by MichaelCurrie almost 9 years ago
Labels: enhancement

#172 - Chris Linzy Path Feature explaination

Pull Request - State: closed - Opened by MichaelCurrie almost 9 years ago - 1 comment

#171 - Fix travis for p2

Pull Request - State: closed - Opened by MichaelCurrie almost 9 years ago - 2 comments

#170 - Get travis on all versions

Pull Request - State: closed - Opened by MichaelCurrie almost 9 years ago - 2 comments

#169 - Have BasicWorm inherit from WCONWorms

Issue - State: closed - Opened by MichaelCurrie almost 9 years ago - 3 comments

#168 - Equality testing of events

Issue - State: open - Opened by JimHokanson almost 9 years ago

#167 - using reportlab to generate reports

Issue - State: closed - Opened by ghost about 9 years ago - 1 comment
Labels: wontfix

#166 - markdownify documentation

Pull Request - State: closed - Opened by clbarnes about 9 years ago - 3 comments

#165 - Fix contribution acknowledgement.

Pull Request - State: closed - Opened by hocheung20 about 9 years ago - 1 comment

#164 - Switch to new features organization

Issue - State: closed - Opened by JimHokanson about 9 years ago - 15 comments
Labels: enhancement

#163 - Locomotion shape mismatch issues

Issue - State: closed - Opened by MichaelCurrie about 9 years ago - 4 comments
Labels: bug

#162 - Nan direction and speed values in velocity feature from example .mat files

Issue - State: closed - Opened by clinzy about 9 years ago - 4 comments

#158 - Investigate these client-server examples

Issue - State: closed - Opened by MichaelCurrie about 9 years ago - 4 comments

#157 - Feature renaming

Issue - State: open - Opened by MichaelCurrie over 9 years ago

#156 - Rename to "open-worm-analysis-toolbox"

Issue - State: closed - Opened by MichaelCurrie over 9 years ago - 2 comments
Labels: enhancement

#155 - Ensure standalone version can also work.

Issue - State: closed - Opened by MichaelCurrie over 9 years ago - 1 comment
Labels: wontfix

#154 - Add an "advantages of this repo" document

Issue - State: closed - Opened by MichaelCurrie over 9 years ago - 1 comment
Labels: enhancement, wontfix

#151 - WormPlotter Animated Plot Issues in OS X

Issue - State: closed - Opened by clinzy over 9 years ago - 3 comments
Labels: bug, wontfix

#146 - non-equal feature comparisons in validate features should be an error

Issue - State: closed - Opened by JimHokanson over 9 years ago - 1 comment

#144 - Speed up skeleton and widths code

Issue - State: closed - Opened by MichaelCurrie over 9 years ago - 9 comments

#143 - Possible bad data point in eigenworms file

Issue - State: closed - Opened by MichaelCurrie over 9 years ago - 4 comments
Labels: bug

#142 - Clean up .travis.yml and bring back Python version testing

Issue - State: closed - Opened by JimHokanson over 9 years ago - 2 comments

#141 - Calculated NormalizedWorm does not match loaded NormalizedWorm

Issue - State: closed - Opened by MichaelCurrie over 9 years ago - 4 comments
Labels: bug

#139 - Push out a release that can be installed on pip

Issue - State: closed - Opened by MichaelCurrie over 9 years ago - 5 comments

#137 - Merge changes from Avelino

Pull Request - State: closed - Opened by JimHokanson over 9 years ago - 3 comments

#136 - Improve Eccentricity calculation

Pull Request - State: closed - Opened by ver228 over 9 years ago - 6 comments

#133 - Refactor WormFeatures by feature type instead of category

Issue - State: open - Opened by MichaelCurrie over 9 years ago - 8 comments
Labels: enhancement

#124 - Basicworm skeleton as ndarray support in NormalizedWorm

Issue - State: closed - Opened by JimHokanson over 9 years ago - 2 comments
Labels: ready

#123 - Go back from .rst to .md

Issue - State: closed - Opened by MichaelCurrie over 9 years ago - 3 comments
Labels: enhancement

#119 - Enhancement: add Si-elegans' experiment schema to the database

Issue - State: closed - Opened by MichaelCurrie over 9 years ago - 1 comment
Labels: wontfix, Ideas

#117 - Incorporate André Brown behavioural syntax

Issue - State: closed - Opened by MichaelCurrie over 9 years ago - 8 comments
Labels: enhancement, wontfix, Ideas

#113 - Cloud use case: View a time-series plot of a feature

Issue - State: closed - Opened by MichaelCurrie almost 10 years ago - 7 comments
Labels: wontfix, Ideas

#112 - Cloud use case: Compare worm strains

Issue - State: closed - Opened by MichaelCurrie almost 10 years ago - 1 comment

#111 - Cloud use case: add a film to the database of worm videos

Issue - State: closed - Opened by MichaelCurrie almost 10 years ago - 1 comment
Labels: ready

#110 - Get database loaded with example data

Issue - State: closed - Opened by MichaelCurrie almost 10 years ago - 6 comments

#106 - Update Examples folder with README

Issue - State: closed - Opened by JimHokanson almost 10 years ago - 1 comment
Labels: ready

#104 - Move Joe's Amazon instance over to an OpenWorm-owned one

Issue - State: closed - Opened by MichaelCurrie almost 10 years ago - 6 comments

#102 - Make the eigenworm loader more accessible

Issue - State: closed - Opened by MichaelCurrie almost 10 years ago - 1 comment

#96 - Update Install Instructions

Issue - State: closed - Opened by JimHokanson almost 10 years ago - 2 comments
Labels: ready

#93 - Write a unit test to validate that specifications match the WormFeatures object

Issue - State: open - Opened by MichaelCurrie about 10 years ago - 3 comments
Labels: ready

#91 - Replicate displays that allow replication of published results

Issue - State: closed - Opened by MichaelCurrie about 10 years ago - 16 comments

#87 - Convert or Document WT 2.0 video parsing code

Issue - State: closed - Opened by MichaelCurrie about 10 years ago - 2 comments
Labels: ready

#81 - Profile the features and statistics

Issue - State: closed - Opened by MichaelCurrie about 10 years ago - 2 comments
Labels: Ideas

#80 - Clean up example_data folder

Issue - State: closed - Opened by MichaelCurrie about 10 years ago - 1 comment
Labels: wontfix

#77 - Get video, contour and pre-features pipeline into the repo

Issue - State: closed - Opened by MichaelCurrie over 10 years ago - 6 comments
Labels: ready

#75 - Refactor code to inherit from SciUnit base classes

Issue - State: closed - Opened by MichaelCurrie over 10 years ago - 1 comment
Labels: enhancement, ready

#70 - Add a new feature type to test extensibility

Issue - State: closed - Opened by MichaelCurrie over 10 years ago - 4 comments
Labels: ready

#65 - Make the config local

Issue - State: closed - Opened by JimHokanson over 10 years ago - 4 comments
Labels: enhancement, ready

#62 - Add Sphynx for documentation

Issue - State: closed - Opened by MichaelCurrie over 10 years ago - 6 comments
Labels: in progress

#57 - Change FPS from a global setting in config.py to a parameter of the file

Issue - State: closed - Opened by MichaelCurrie over 10 years ago - 5 comments
Labels: ready

#53 - Make README simpler and clearer with more usage examples

Issue - State: closed - Opened by MichaelCurrie over 10 years ago - 3 comments
Labels: ready

#30 - Test features against SegwormMatLabClasses code

Issue - State: closed - Opened by MichaelCurrie almost 11 years ago - 4 comments

#18 - Display features in a coloured grid-chart just like in the Yemini paper

Issue - State: closed - Opened by MichaelCurrie almost 11 years ago - 2 comments
Labels: wontfix, Ideas

#8 - Understand how to read ASCII-encoded parts of the .MAT experiment files

Issue - State: closed - Opened by MichaelCurrie about 11 years ago - 4 comments

#7 - Document all of the structure of the worm experiment files

Issue - State: closed - Opened by MichaelCurrie about 11 years ago - 2 comments
Labels: ready

#6 - Try a scatterplot of worm position over time.

Issue - State: closed - Opened by MichaelCurrie about 11 years ago - 1 comment
Labels: Ideas

#3 - Try replicating some of the Schafer Worm Tracker 2.0 interface in the matplotlib worm visualizer.

Issue - State: closed - Opened by MichaelCurrie about 11 years ago - 1 comment
Labels: Ideas

#2 - Display time information about the worm in the plot

Issue - State: closed - Opened by MichaelCurrie about 11 years ago - 3 comments
Labels: Ideas