openworm/hodgkin_huxley_tutorial issues and pull requests

#76 - feat: add instructions for Google collab

Pull Request - State: closed - Opened by sanjayankur31 29 days ago - 1 comment

#75 - Update to tests - tighter tolerances

Pull Request - State: closed - Opened by pgleeson 7 months ago

#74 - Fix vclamp duration/dt issue

Pull Request - State: closed - Opened by pgleeson about 1 year ago - 1 comment

#73 - Issue70

Pull Request - State: closed - Opened by VahidGh about 1 year ago - 2 comments

#72 - Remove start time in HH python notebook?

Issue - State: closed - Opened by pgleeson about 1 year ago
Labels: HH Jupyter

#71 - Changing total simulation time not working in voltage clamp mode in HH Python notebook

Issue - State: closed - Opened by pgleeson about 1 year ago
Labels: HH Jupyter

#70 - Issue with multiple plot axes/ticks in HH jupyter notebook on matplotlib 3.8

Issue - State: closed - Opened by pgleeson about 1 year ago - 2 comments
Labels: bug, Ready, HH Jupyter

#69 - Update README.md

Pull Request - State: closed - Opened by pgleeson about 1 year ago

#68 - Update year in footer; update GHA versions

Pull Request - State: closed - Opened by pgleeson about 1 year ago

#67 - Ignore arm64 dir

Pull Request - State: closed - Opened by pgleeson over 1 year ago

#66 - Test on 3.8 and 3.10

Pull Request - State: closed - Opened by pgleeson over 1 year ago

#65 - Option to show extra plots of driving force and m3h etc.

Pull Request - State: closed - Opened by pgleeson almost 2 years ago

#64 - Add test on jnmlmoose

Pull Request - State: closed - Opened by pgleeson about 2 years ago

#63 - Add option to keep traces/overlay across simulation runs

Issue - State: open - Opened by pgleeson about 2 years ago
Labels: HH Jupyter

#62 - Select plots

Pull Request - State: closed - Opened by pgleeson about 2 years ago

#61 - Feat/allow plot toggling

Pull Request - State: closed - Opened by sanjayankur31 about 2 years ago

#60 - Add checkboxes to select which of 5 (or 7: #59) plots to show in HH notebook

Issue - State: closed - Opened by pgleeson about 2 years ago - 1 comment
Labels: HH Jupyter

#59 - Add 2 more plots to HH notebook: m3h + n4; driving force (Vm-Eion)

Issue - State: closed - Opened by pgleeson about 2 years ago
Labels: HH Jupyter

#58 - feat: use values from text boxes for simulation

Pull Request - State: closed - Opened by sanjayankur31 about 2 years ago

#57 - Add note that current is in pA also...

Pull Request - State: closed - Opened by pgleeson about 2 years ago - 1 comment

#56 - Updated images, descriptions and parameters to match NEURON

Pull Request - State: closed - Opened by pgleeson about 2 years ago

#55 - Change injection current units to nA in Python notebook

Issue - State: closed - Opened by pgleeson about 2 years ago - 1 comment

#54 - Fewer time points in vclamp mode

Pull Request - State: closed - Opened by pgleeson about 2 years ago

#53 - HH python notebook crashes kernel on OSBv2

Issue - State: closed - Opened by pgleeson about 2 years ago

#52 - Adding OMV test on HH; conductance plots; simplify code in notebook

Pull Request - State: closed - Opened by pgleeson about 2 years ago

#51 - Ensure all x and y values printed at bottom of plots reflect x and y values in plot where pointer is located

Issue - State: closed - Opened by pgleeson about 2 years ago - 1 comment

#50 - Add 5th plot with conductances of Na and K

Issue - State: closed - Opened by pgleeson about 2 years ago

#49 - Notebook updates

Pull Request - State: closed - Opened by pgleeson about 2 years ago

#48 - Adding readmes and an image of the interactive notebook

Pull Request - State: closed - Opened by pgleeson about 2 years ago

#47 - Requirements file

Pull Request - State: closed - Opened by pgleeson about 2 years ago

#46 - Add instructions to run notebooks on OSBv2

Issue - State: closed - Opened by pgleeson about 2 years ago - 1 comment

#45 - Add link to run notebook(s) on Binder & Collab

Issue - State: open - Opened by pgleeson about 2 years ago - 1 comment
Labels: HH Jupyter

#44 - Updated line numbers in `Tutorial.rst` for documentation (Fixes issue #40)

Pull Request - State: closed - Opened by irahulsonkar about 2 years ago - 1 comment

#43 - Jupyter Notebook for NeuroML model using `info` method

Pull Request - State: closed - Opened by irahulsonkar about 2 years ago - 5 comments

#42 - GSoC 2022 Submission

Pull Request - State: closed - Opened by irahulsonkar about 2 years ago - 1 comment

#41 - Add image of HH notebook on main README

Issue - State: closed - Opened by pgleeson about 2 years ago - 1 comment

#40 - Update line numbers

Issue - State: closed - Opened by pgleeson about 2 years ago - 2 comments

#39 - Vclamp Notebook minor updates

Pull Request - State: closed - Opened by irahulsonkar about 2 years ago

#38 - Updated notebooks & vclamp support in main python script

Pull Request - State: closed - Opened by pgleeson about 2 years ago

#37 - Notebook for HH model python version updated (issue #33)

Pull Request - State: closed - Opened by irahulsonkar about 2 years ago - 3 comments

#36 - bug fix: tab widget title

Pull Request - State: closed - Opened by irahulsonkar about 2 years ago

#35 - Extended HodgkinHuxley.py for voltage clamp mode (issue #32)

Pull Request - State: closed - Opened by irahulsonkar about 2 years ago - 1 comment

#34 - ET notebook updated

Pull Request - State: closed - Opened by irahulsonkar about 2 years ago - 6 comments

#33 - Update notebook for running voltage clamp simulations

Issue - State: closed - Opened by pgleeson about 2 years ago - 2 comments

#32 - Extend HodgkinHuxley.py for optionally running in voltage clamp mode

Issue - State: closed - Opened by pgleeson about 2 years ago - 1 comment

#31 - Neuro ml jupyter notebook

Pull Request - State: closed - Opened by irahulsonkar about 2 years ago

#30 - Notebook example with NML

Pull Request - State: closed - Opened by pgleeson over 2 years ago

#29 - NeuroML jupyter notebook (Issue #20)

Pull Request - State: closed - Opened by irahulsonkar over 2 years ago - 1 comment

#28 - Jupyter notebook with HH example & updated docs

Pull Request - State: closed - Opened by pgleeson over 2 years ago

#27 - Updated default injection current

Pull Request - State: closed - Opened by pgleeson over 2 years ago

#26 - test

Pull Request - State: closed - Opened by pgleeson over 2 years ago

#25 - Ensure commits to master get updated on readthedocs

Issue - State: closed - Opened by pgleeson over 2 years ago - 3 comments

#24 - Update index.rst

Pull Request - State: closed - Opened by pgleeson over 2 years ago

#23 - Test on development

Pull Request - State: closed - Opened by pgleeson over 2 years ago

#22 - Test on development

Pull Request - State: closed - Opened by pgleeson over 2 years ago

#21 - Jupyter Notebook: Initial Version

Pull Request - State: closed - Opened by irahulsonkar over 2 years ago - 5 comments

#20 - Create Jupyter notebook for NeuroML model

Issue - State: closed - Opened by pgleeson over 2 years ago - 5 comments

#19 - Create a Jupyter Notebook of the pure Python HH example

Issue - State: closed - Opened by pgleeson over 2 years ago - 3 comments

#18 - Use numpy to address SciPy 2.0.0 deprecation warnings

Pull Request - State: closed - Opened by pgleeson about 4 years ago

#17 - Use numpy to address SciPy 2.0.0 deprecation warnings

Pull Request - State: closed - Opened by sanjayankur31 about 4 years ago

#16 - Update HodgkinHuxley.py

Pull Request - State: closed - Opened by swharden about 5 years ago - 1 comment

#15 - replace HH with Hodgkin-Huxley

Pull Request - State: closed - Opened by raminmh about 8 years ago - 1 comment

#14 - Point to Neuromembrane demo for more info

Issue - State: open - Opened by pgleeson about 9 years ago

#13 - Automatic update of ReadTheDocs?

Issue - State: closed - Opened by pgleeson about 9 years ago - 10 comments

#12 - Splitting the NML2 & LEMS files into files for cells/channels/networks

Pull Request - State: closed - Opened by pgleeson over 9 years ago - 3 comments

#11 - Fix electrophysiology link on index

Issue - State: closed - Opened by travs over 9 years ago

#10 - Add one-to-one list of plots produced from pynml-channelanalysis

Issue - State: open - Opened by travs over 9 years ago

#9 - Add I/V plot page to tutorial

Issue - State: closed - Opened by travs over 9 years ago

#8 - Add introduction to tutorial index page

Issue - State: closed - Opened by travs over 9 years ago
Labels: In progress

#7 - Error running HodgkinHuxley.py

Issue - State: closed - Opened by travs over 9 years ago - 6 comments

#6 - Add Geppetto tutorial to existing HH Model tutorial

Issue - State: closed - Opened by joebowen almost 10 years ago - 13 comments
Labels: enhancement, In progress

#5 - Fleshing out text

Pull Request - State: closed - Opened by slarson almost 10 years ago

#4 - Adding certain initial values to simulation

Issue - State: closed - Opened by joebowen almost 10 years ago - 2 comments

#3 - Source code line numbers

Issue - State: open - Opened by joebowen almost 10 years ago
Labels: enhancement

#2 - More descriptive language in tutorial

Issue - State: closed - Opened by joebowen almost 10 years ago - 2 comments

#1 - JNML Install tutorial

Issue - State: closed - Opened by joebowen almost 10 years ago - 6 comments
Labels: enhancement

GitHub / openworm/hodgkin_huxley_tutorial issues and pull requests