Ecosyste.ms: Issues

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GitHub / openworm/celegansneuroml issues and pull requests

#114 - Update .travis.yml

Pull Request - State: closed - Opened by pgleeson over 3 years ago

#113 - Adding missing attribution

Pull Request - State: closed - Opened by ed5000 over 4 years ago

#112 - generatedNeuroML2 directory does not include synapses

Issue - State: open - Opened by clbarnes almost 6 years ago - 3 comments

#110 - Making c302 more module like

Pull Request - State: closed - Opened by rgerkin over 6 years ago - 2 comments
Labels: in progress

#109 - Make c302 installable

Issue - State: closed - Opened by rgerkin over 6 years ago - 4 comments
Labels: question

#106 - Ow 0.8 py3

Pull Request - State: closed - Opened by slarson over 6 years ago - 1 comment

#105 - Test running jnml on python3

Issue - State: closed - Opened by pgleeson almost 7 years ago - 1 comment

#104 - cannot import name 'ElectricalConnectionInstanceW'

Issue - State: closed - Opened by clausagerskov almost 7 years ago - 5 comments

#103 - 2to3

Pull Request - State: open - Opened by slarson almost 7 years ago - 3 comments
Labels: in progress

#102 - Updates for OpenWorm 0.7 release

Pull Request - State: open - Opened by slarson almost 7 years ago - 1 comment
Labels: in progress

#100 - Conn matrix improvement

Pull Request - State: closed - Opened by pgleeson about 7 years ago

#99 - Override channel gate attribs

Pull Request - State: closed - Opened by lungd about 7 years ago

#98 - Refactoring

Pull Request - State: closed - Opened by lungd about 7 years ago

#97 - Optimizer improvements

Pull Request - State: open - Opened by lungd about 7 years ago
Labels: in progress

#96 - Update configs and notebooks

Pull Request - State: closed - Opened by lungd about 7 years ago

#95 - Conn matrix improvement

Pull Request - State: closed - Opened by lungd about 7 years ago

#94 - Param overrides improvement

Pull Request - State: closed - Opened by lungd about 7 years ago

#93 - Rewrite_nml_lems_info

Pull Request - State: closed - Opened by lungd about 7 years ago

#92 - Delayed_GJ

Pull Request - State: closed - Opened by lungd about 7 years ago

#91 - runAndPlot_param

Pull Request - State: closed - Opened by lungd about 7 years ago

#90 - heightened_heatmaps

Pull Request - State: closed - Opened by lungd about 7 years ago

#89 - muscle_inact_equation

Pull Request - State: closed - Opened by lungd about 7 years ago

#88 - Merging Weights branch

Pull Request - State: closed - Opened by pgleeson over 7 years ago

#87 - Sometimes nrniv tasks don't get terminated after CTRL+C

Issue - State: open - Opened by lungd over 7 years ago - 2 comments

#86 - Add config params to override

Pull Request - State: closed - Opened by lungd over 7 years ago - 1 comment

#85 - c302_utils.plots() tuning

Pull Request - State: closed - Opened by lungd over 7 years ago

#84 - Print cell labels with natural sort order

Pull Request - State: closed - Opened by lungd over 7 years ago

#83 - Docker notebook

Pull Request - State: closed - Opened by pgleeson over 7 years ago

#82 - Discussions on simulating the worm's crawling by means of command neurons, motor neurons and muscle cells

Issue - State: open - Opened by raminmh over 7 years ago - 4 comments
Labels: in progress, c302, tests

#81 - Docker notebook

Pull Request - State: closed - Opened by pgleeson over 7 years ago

#80 - Docker notebooks

Pull Request - State: closed - Opened by slarson over 7 years ago - 3 comments

#79 - Don't create plots for an empty cell list.

Pull Request - State: closed - Opened by lungd over 7 years ago

#78 - Argument parsing fix

Pull Request - State: closed - Opened by lungd almost 8 years ago

#77 - Executing c302.py with -cells (or other list arguments) - missing parsing

Issue - State: closed - Opened by lungd almost 8 years ago
Labels: bug

#76 - Add conns_to_include param

Pull Request - State: closed - Opened by lungd almost 8 years ago

#75 - Tap-withdrawal circuit

Pull Request - State: closed - Opened by lungd almost 8 years ago - 1 comment

#74 - New params for c302

Pull Request - State: closed - Opened by lungd almost 8 years ago - 1 comment

#73 - conn_number_override issue - AttributeError GradedSynapse.gbase

Issue - State: closed - Opened by lungd almost 8 years ago - 1 comment

#72 - Initial version of parameters D (multicompartmental cells)

Pull Request - State: closed - Opened by pgleeson about 8 years ago

#71 - Implement parameters D

Issue - State: open - Opened by pgleeson about 8 years ago

#70 - Running OpenWorm simulations on SpiNNaker

Issue - State: open - Opened by pgleeson about 8 years ago - 1 comment

#69 - Test params -> params D

Pull Request - State: closed - Opened by pgleeson about 8 years ago

#68 - Updation of desired phase offset between D/V pairs in C302NetTuner.py

Pull Request - State: closed - Opened by pgleeson about 8 years ago

#67 - Testing

Pull Request - State: closed - Opened by pgleeson about 8 years ago

#65 - Test ed5000

Pull Request - State: closed - Opened by pgleeson over 8 years ago

#62 - Can c302 with jNeuroML-NEURON take advantage of multiple CPU cores?

Issue - State: open - Opened by slarson over 8 years ago - 3 comments
Labels: question

#61 - Attempt to match named cells in Kato paper

Pull Request - State: closed - Opened by slarson over 8 years ago - 3 comments

#60 - What would it take to include activity dependent conductances?

Issue - State: open - Opened by slarson over 8 years ago
Labels: question

#59 - Python scripts tester

Pull Request - State: closed - Opened by brijeshmodi12 over 8 years ago - 5 comments

#58 - directory comment added

Pull Request - State: closed - Opened by nmsutton over 8 years ago

#57 - Make OpenSourceBrain's visualization of this repo include Hive Plots

Issue - State: closed - Opened by slarson over 8 years ago - 8 comments

#56 - Make it easier to get at simulation results

Issue - State: closed - Opened by slarson almost 9 years ago - 38 comments
Labels: question

#55 - Update setup.py

Pull Request - State: closed - Opened by pgleeson almost 9 years ago

#54 - Problem installing

Issue - State: closed - Opened by tnaoi almost 9 years ago - 6 comments

#53 - Test python scripts

Issue - State: open - Opened by travs about 9 years ago - 4 comments
Labels: tests

#52 - Ensure consistent directory structure and naming schemes for tests

Issue - State: open - Opened by gsarma over 9 years ago
Labels: tests, SciUnit

#51 - Check for performance regressions in testing suite

Issue - State: open - Opened by gsarma over 9 years ago
Labels: tests

#50 - Create tests to catch performance regressions in specific functions

Issue - State: open - Opened by gsarma over 9 years ago - 4 comments
Labels: tests

#49 - Use OpenWormReader to generate connectome

Issue - State: closed - Opened by travs over 9 years ago - 6 comments

#48 - Introduces setup.py & Fixes #47

Pull Request - State: closed - Opened by slarson over 9 years ago - 3 comments

#48 - Introduces setup.py & Fixes #47

Pull Request - State: closed - Opened by slarson over 9 years ago - 3 comments

#47 - Create a setup.py for CElegansNeuroML & c302

Issue - State: closed - Opened by slarson over 9 years ago

#46 - Added script to read data from PyOpenWorm

Pull Request - State: closed - Opened by aleph-ra over 9 years ago - 1 comment

#45 - Full implementation in WormSim

Issue - State: open - Opened by travs over 9 years ago

#44 - Design WormSim UI additions for the muscle neuron model

Issue - State: open - Opened by travs over 9 years ago

#43 - Run/visualize motor neuron network in Geppetto

Issue - State: closed - Opened by travs over 9 years ago - 1 comment

#42 - Run multi-scale optimization for motor neuron network

Issue - State: open - Opened by travs over 9 years ago

#35 - Embed best-guess ion channels in motor/neuron cell models

Issue - State: open - Opened by travs over 9 years ago

#34 - Make a best guess for ion channels in relevant cells

Issue - State: open - Opened by travs over 9 years ago - 2 comments

#33 - Document the tests in c302

Issue - State: open - Opened by travs over 9 years ago
Labels: c302, tests

#32 - Validate two tests of c302 connectivity using SciUnit

Issue - State: open - Opened by travs over 9 years ago - 1 comment
Labels: c302, tests, SciUnit

#31 - Run tests using the pytest framework rather than standard unittests

Issue - State: open - Opened by travs over 9 years ago - 4 comments
Labels: c302

#30 - Run c302 README examples in doctests

Issue - State: open - Opened by travs over 9 years ago
Labels: c302

#29 - Make sure there are examples in the README for key functions of c302

Issue - State: open - Opened by travs over 9 years ago
Labels: c302

#28 - Change data source to PyOpenWorm in unit tests

Issue - State: open - Opened by travs over 9 years ago - 9 comments
Labels: c302, tests

#27 - Adapt current data loading process in c302.py to pull data from PyOpenWorm

Issue - State: closed - Opened by travs over 9 years ago - 17 comments
Labels: c302

#26 - Question on simulations

Issue - State: closed - Opened by CliffracerX over 9 years ago - 4 comments

#25 - Draft workflow outline for validation tests

Issue - State: open - Opened by travs over 9 years ago
Labels: c302

#24 - Change the path for c302tuner.py

Issue - State: closed - Opened by VahidGh over 9 years ago - 3 comments
Labels: c302

#23 - adding CompareMain.py

Pull Request - State: closed - Opened by aribrich almost 10 years ago - 6 comments

#22 - Initial implementation of parameters C

Pull Request - State: closed - Opened by pgleeson almost 10 years ago

#21 - Pull request to get Ari's changes

Pull Request - State: closed - Opened by slarson almost 10 years ago - 6 comments

#20 - Clean up/check neuroConstruct project & generated NeuroML files

Issue - State: closed - Opened by pgleeson almost 10 years ago - 2 comments
Labels: enhancement

#19 - Adding data sanity unit tests for c302

Pull Request - State: closed - Opened by aleph-ra almost 10 years ago - 9 comments

#18 - Replace the _GJ .nml files with an "innexin" model

Issue - State: closed - Opened by slarson about 10 years ago - 3 comments

#17 - Problem with NeuroML loaders and individual cell .nml

Issue - State: closed - Opened by wilzh40 over 10 years ago - 3 comments

#16 - Implements custom weight setting in c302

Pull Request - State: closed - Opened by pgleeson over 10 years ago