Ecosyste.ms: Issues

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GitHub / openworm/c302 issues and pull requests

#82 - To v0.8.1; apply black formatting to python

Pull Request - State: closed - Opened by pgleeson about 1 month ago

#81 - Add action for push to pypi on new release

Pull Request - State: closed - Opened by pgleeson about 1 month ago

#80 - Allows c302 to be fully used without owmeta installed...

Pull Request - State: closed - Opened by pgleeson about 1 month ago

#79 - Ensure tests run if no owmeta installed...

Pull Request - State: closed - Opened by pgleeson about 1 month ago

#78 - Windows setup instructions

Pull Request - State: closed - Opened by KaanS139 3 months ago

#77 - Regenerated nml files with latest nml libraries

Pull Request - State: closed - Opened by pgleeson 3 months ago

#76 - Document lfs checkout from this repo

Issue - State: open - Opened by pgleeson 3 months ago

#75 - More color options in conn matrices & test on mac

Pull Request - State: closed - Opened by pgleeson 5 months ago

#74 - Latets master

Pull Request - State: closed - Opened by pgleeson 5 months ago

#73 - Many updated readers

Pull Request - State: closed - Opened by pgleeson 7 months ago

#72 - Updated notebook

Pull Request - State: closed - Opened by pgleeson 7 months ago

#71 - test white

Pull Request - State: closed - Opened by pgleeson 7 months ago

#69 - Improved Varshney & Witvliet

Pull Request - State: closed - Opened by pgleeson 8 months ago

#68 - witvliet

Pull Request - State: closed - Opened by pgleeson 8 months ago

#67 - latest varshney

Pull Request - State: closed - Opened by pgleeson 8 months ago

#66 - Test Witvliet

Pull Request - State: closed - Opened by pgleeson 8 months ago

#65 - Development

Pull Request - State: closed - Opened by pgleeson 8 months ago

#63 - Don't throw an error when analysing if no neuron-muscle connections

Pull Request - State: closed - Opened by pgleeson 10 months ago

#62 - Update non_omv.yml to test WormNeuroAtlasReader

Pull Request - State: open - Opened by yasinthanvickneswaran 10 months ago

#61 - Update setup.py to include WormNeuroAtlas

Pull Request - State: closed - Opened by yasinthanvickneswaran 10 months ago - 1 comment

#60 - Update test.sh to include WormNeuroAtlasReader

Pull Request - State: closed - Opened by yasinthanvickneswaran 10 months ago

#59 - Adding WormNeuroAtlas

Pull Request - State: closed - Opened by yasinthanvickneswaran 10 months ago - 1 comment

#58 - Update test.sh to include WormNeuroAtlasReader

Pull Request - State: closed - Opened by yasinthanvickneswaran 10 months ago

#57 - Added WormNeuroAtlasReader to test.sh

Pull Request - State: closed - Opened by yasinthanvickneswaran 10 months ago

#56 - Added WormNeuroAtlas

Pull Request - State: closed - Opened by yasinthanvickneswaran 10 months ago - 1 comment

#55 - fatal error: 'H5public.h' file not found

Issue - State: closed - Opened by Abhinandan-Kushwaha 10 months ago - 1 comment

#54 - Add WormNeuroAtlas to dependencies and add to tests

Issue - State: closed - Opened by pgleeson 10 months ago

#53 - Update dependencies, installation, and README

Pull Request - State: closed - Opened by austinklein 10 months ago

#51 - To v0.7.12; fix for pynml plotting

Pull Request - State: closed - Opened by pgleeson 11 months ago

#50 - Regenerated & fixed issue in input

Pull Request - State: closed - Opened by pgleeson about 1 year ago

#49 - Initial WormNeuroAtlasReader

Pull Request - State: closed - Opened by pgleeson about 1 year ago

#48 - Regenerated NeuroML

Pull Request - State: closed - Opened by pgleeson over 1 year ago

#47 - Test on more py versions

Pull Request - State: closed - Opened by pgleeson over 1 year ago

#46 - Increment version

Pull Request - State: closed - Opened by pgleeson over 2 years ago

#45 - Latest to 0.9.2 branch

Pull Request - State: closed - Opened by pgleeson over 2 years ago

#44 - Testpy36

Pull Request - State: closed - Opened by pgleeson almost 3 years ago

#43 - owmeta latest used and all tests passing

Pull Request - State: closed - Opened by pgleeson almost 3 years ago

#42 - owmeta installation fails on GH actions

Issue - State: closed - Opened by pgleeson almost 3 years ago - 3 comments

#41 - Development

Pull Request - State: closed - Opened by pgleeson almost 3 years ago

#40 - More tests

Pull Request - State: closed - Opened by pgleeson almost 3 years ago

#39 - Add Github actions

Pull Request - State: closed - Opened by pgleeson about 3 years ago

#38 - Move tests to travis-ci.com

Issue - State: closed - Opened by pgleeson over 3 years ago - 3 comments

#37 - Adding images for the LEMS_MyNetwork nml run

Pull Request - State: closed - Opened by mwatts15 over 3 years ago - 1 comment

#35 - Recommending `pip install` rather than calling setup.py

Pull Request - State: closed - Opened by mwatts15 over 3 years ago

#34 - Quick test problem

Issue - State: closed - Opened by iKaHibi over 3 years ago - 2 comments

#33 - Use owmeta

Pull Request - State: closed - Opened by pgleeson over 3 years ago

#32 - first installation error : unable to download c302 module

Issue - State: closed - Opened by woobin3069 almost 4 years ago - 3 comments

#31 - Development owmeta

Pull Request - State: closed - Opened by pgleeson almost 4 years ago - 1 comment

#30 - Ow 0.9.1

Pull Request - State: closed - Opened by pgleeson almost 4 years ago

#29 - Updating OpenWormReader and using it in c302.c302_* scripts

Pull Request - State: closed - Opened by mwatts15 almost 4 years ago - 1 comment

#27 - owmeta-refactor

Pull Request - State: closed - Opened by mwatts15 over 4 years ago

#26 - POW refactor

Pull Request - State: closed - Opened by mwatts15 over 4 years ago - 2 comments

#25 - Can't connect to PyOpenWorm

Issue - State: closed - Opened by ManuelCarrascoY over 4 years ago - 5 comments

#24 - No module named 'bioparameters'

Issue - State: closed - Opened by ManuelCarrascoY over 4 years ago - 4 comments

#23 - Minor edits: python3 compatibility, dependencies update

Pull Request - State: closed - Opened by necr0n almost 5 years ago - 1 comment

#22 - runnin sh test.sh in cmd

Issue - State: open - Opened by moanra over 5 years ago - 3 comments

#21 - Latest pyow

Pull Request - State: closed - Opened by pgleeson over 5 years ago

#20 - Tiny spelling fix

Pull Request - State: closed - Opened by rejunity over 5 years ago - 1 comment

#19 - Feature/update openworm reader 10

Pull Request - State: closed - Opened by mwatts15 over 5 years ago - 1 comment

#18 - Data Provenance

Issue - State: closed - Opened by jescab01 over 5 years ago - 5 comments

#17 - Data c302

Issue - State: closed - Opened by jescab01 over 5 years ago

#16 - add clarity to example. no functionality change

Pull Request - State: closed - Opened by quffaro about 6 years ago - 1 comment

#15 - Adding overview graphic to README.

Pull Request - State: closed - Opened by gsarma about 6 years ago

#14 - Clarify pipeline from ChannelWorm to c302

Issue - State: open - Opened by gsarma about 6 years ago

#13 - Update OpenWormReader to use the latest version of owmeta (pt 2)

Issue - State: open - Opened by mwatts15 over 6 years ago
Labels: enhancement, PyOpenWorm

#12 - Create a c302 DataTranslator and DataSources

Issue - State: open - Opened by mwatts15 over 6 years ago
Labels: PyOpenWorm

#11 - Compare running times of NeuroML file generation with OpenWormReader vs Spreadsheet reader

Issue - State: open - Opened by mwatts15 over 6 years ago - 1 comment
Labels: PyOpenWorm

#10 - Update OpenWormReader to use the latest version of PyOpenWorm (pt 1)

Issue - State: open - Opened by mwatts15 over 6 years ago - 6 comments

#9 - Make a proper unit test suite

Issue - State: open - Opened by mwatts15 over 6 years ago
Labels: test quality

#8 - Update documentation and code to run c302/c302_*.py as python -m c302.c302_*

Issue - State: open - Opened by mwatts15 over 6 years ago - 2 comments
Labels: enhancement, good first issue, documentation

#7 - Replace unqualified relative imports with explicit relative imports

Issue - State: closed - Opened by mwatts15 over 6 years ago - 1 comment

#6 - Remove assumptions of spreadsheet reader being used

Issue - State: open - Opened by mwatts15 over 6 years ago
Labels: enhancement

#5 - Pass in reader objects rather than names of readers for for data_reader arguments

Issue - State: open - Opened by mwatts15 over 6 years ago
Labels: enhancement

#4 - Development

Pull Request - State: closed - Opened by pgleeson over 6 years ago

#3 - Use this as default for sibernetic

Issue - State: open - Opened by pgleeson over 6 years ago - 1 comment

#2 - Add all omv tests from original repo

Issue - State: closed - Opened by pgleeson over 6 years ago

#1 - Add generated activity images to this repo

Issue - State: closed - Opened by pgleeson over 6 years ago