Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / openvax/varlens issues and pull requests

#31 - Update libraries

Pull Request - State: closed - Opened by timodonnell about 7 years ago

#30 - Depends on old pysam

Issue - State: closed - Opened by iskandr about 7 years ago

#29 - Output .bam

Issue - State: open - Opened by JPFinnigan over 7 years ago

#28 - Update README.rst

Pull Request - State: closed - Opened by ihodes over 8 years ago

#27 - Variants mhc output peptides

Pull Request - State: closed - Opened by timodonnell almost 9 years ago

#26 - Add option to create a window around a variant

Pull Request - State: closed - Opened by arahuja almost 9 years ago - 1 comment

#25 - Require cython for pysam

Pull Request - State: closed - Opened by tavinathanson almost 9 years ago - 3 comments

#24 - Remove GitHub pages from Travis config

Pull Request - State: closed - Opened by tavinathanson almost 9 years ago - 3 comments

#23 - Deploy to PyPi with Travis?

Issue - State: closed - Opened by tavinathanson almost 9 years ago - 5 comments
Labels: enhancement

#22 - Output header to SAM file

Issue - State: open - Opened by iskandr almost 9 years ago

#21 - fix sam sorting error in varlens-reads

Pull Request - State: closed - Opened by timodonnell almost 9 years ago

#20 - varlens-allele-support doesn't acceptable positional BAM argument

Issue - State: open - Opened by iskandr almost 9 years ago - 2 comments

#19 - Start 0.2 release

Pull Request - State: closed - Opened by timodonnell almost 9 years ago

#18 - Drop python evaluation

Pull Request - State: closed - Opened by timodonnell almost 9 years ago

#17 - get rid of the python-based dsl

Issue - State: closed - Opened by timodonnell almost 9 years ago

#16 - More fixes

Pull Request - State: closed - Opened by timodonnell almost 9 years ago

#15 - Drop url parsing logic

Pull Request - State: closed - Opened by timodonnell almost 9 years ago

#14 - varlens-variants: add an annotation for membership in capture kit intervals

Issue - State: open - Opened by timodonnell almost 9 years ago - 1 comment

#13 - cleanup varlens and make a pip release

Issue - State: closed - Opened by timodonnell almost 9 years ago - 2 comments

#12 - varlens-variants: correctly handle duplicate variants from multiple files

Issue - State: closed - Opened by timodonnell almost 9 years ago - 1 comment

#11 - Moved ReadSource to read_source.py

Pull Request - State: closed - Opened by iskandr about 9 years ago - 1 comment

#10 - Failing unit tests

Issue - State: closed - Opened by iskandr about 9 years ago - 2 comments

#9 - Added numpy requirement

Pull Request - State: closed - Opened by e5c about 9 years ago - 1 comment

#8 - Three suggestions for reporting.

Issue - State: closed - Opened by JPFinnigan about 9 years ago - 6 comments

#7 - varlens allele support is too slow

Issue - State: open - Opened by timodonnell about 9 years ago - 1 comment

#6 - support filtering variants by evidence

Issue - State: open - Opened by timodonnell about 9 years ago

#5 - Support Python 3.X

Issue - State: closed - Opened by armish about 9 years ago - 3 comments

#4 - fix README image and improve Travis build

Pull Request - State: closed - Opened by armish about 9 years ago - 5 comments

#3 - Upgrade to pysam 0.8.4. Closes #1.

Pull Request - State: closed - Opened by timodonnell about 9 years ago

#2 - Add support for continuous integration with Travis

Pull Request - State: closed - Opened by armish about 9 years ago - 1 comment

#1 - Multiple tests fail on a vanilla installation

Issue - State: closed - Opened by armish about 9 years ago - 2 comments