openvax/datacache issues and pull requests

#46 - Deprecared version in conda break `pyensembl` installation in bioconda

Issue - State: open - Opened by simozacca 9 months ago

#45 - SQLite error triggered by long time connection

Issue - State: open - Opened by SilverNebula 9 months ago

#44 - Update database_types.py

Pull Request - State: closed - Opened by y9c about 1 year ago

#43 - Switch from nose to pytest

Pull Request - State: closed - Opened by mdb571 almost 3 years ago - 2 comments

#42 - test_fetch_decompress failure

Issue - State: open - Opened by fabianegli over 4 years ago - 1 comment

#41 - Replace assertions with raise

Pull Request - State: closed - Opened by iskandr almost 5 years ago - 1 comment

#40 - Assert used instead of if

Issue - State: open - Opened by fabianegli about 5 years ago

#39 - Copying files with shutil.move will fail on SELinux

Issue - State: open - Opened by iskandr about 6 years ago

#37 - Try using wget

Pull Request - State: closed - Opened by iskandr over 6 years ago - 1 comment

#36 - Adding timeout parameter and removing fasta helpers

Pull Request - State: closed - Opened by iskandr over 6 years ago

#35 - Fix linting errors

Pull Request - State: closed - Opened by iskandr almost 7 years ago

#34 - fix version lookup

Pull Request - State: closed - Opened by iskandr almost 7 years ago

#33 - err fixing number typo in RELEASING.md instructions

Pull Request - State: closed - Opened by julia326 over 8 years ago - 2 comments

#32 - Adding a RELEASING.md and upping the version

Pull Request - State: closed - Opened by julia326 over 8 years ago - 1 comment

#31 - add a RELEASING.md

Issue - State: closed - Opened by julia326 over 8 years ago

#30 - one logger per module

Pull Request - State: closed - Opened by julia326 over 8 years ago

#29 - one logger per module

Issue - State: closed - Opened by julia326 over 8 years ago

#28 - Use subdir when the cache directory is defined through an ENV variable

Pull Request - State: closed - Opened by armish over 8 years ago - 6 comments

#27 - split DB creation helper to allow for manually specifying absolute paths

Pull Request - State: closed - Opened by iskandr over 9 years ago - 1 comment

#26 - Liberate database table logic from datacache

Issue - State: open - Opened by tavinathanson over 9 years ago
Labels: enhancement

#25 - Allow datacache to use any DB-API backend

Pull Request - State: closed - Opened by tavinathanson over 9 years ago - 5 comments

#24 - Don't be so damn magical with HTML downloads

Issue - State: closed - Opened by iskandr almost 10 years ago

#23 - switched from progressbar to its Py3 compatible fork progressbar33

Pull Request - State: closed - Opened by iskandr almost 10 years ago - 1 comment

#22 - Progressbar dependency doesn't work with Python3

Issue - State: closed - Opened by iskandr almost 10 years ago

#21 - wrong method name used in database_helpers

Pull Request - State: closed - Opened by iskandr almost 10 years ago - 1 comment

#20 - Open file with mode 'wb' instead of 'w' in download.py

Pull Request - State: closed - Opened by timodonnell almost 10 years ago - 1 comment

#19 - python 3 issue in download.py

Issue - State: closed - Opened by timodonnell almost 10 years ago

#18 - Remove fetch_csv_db from database_helpers

Issue - State: closed - Opened by iskandr almost 10 years ago

#17 - Wrap table names with brackets and colum names with quotes in SQL queries

Issue - State: open - Opened by iskandr almost 10 years ago

#16 - Create database with multiple tables

Pull Request - State: closed - Opened by iskandr almost 10 years ago - 5 comments

#15 - fixed impl of delete_key, renamed to delete_url, and added unit test

Pull Request - State: closed - Opened by iskandr almost 10 years ago - 2 comments

#14 - Adding force fetching

Pull Request - State: closed - Opened by tavinathanson almost 10 years ago - 1 comment

#13 - Fix impl of Cache.delete_key

Pull Request - State: closed - Opened by laserson about 10 years ago - 1 comment

#12 - `Cache.delete_key` is broken

Issue - State: closed - Opened by laserson about 10 years ago - 1 comment

#11 - Some random pythonic improvements

Pull Request - State: closed - Opened by laserson about 10 years ago - 1 comment

#10 - Don't use assert for control flow

Issue - State: closed - Opened by hammer about 10 years ago

#9 - Eliminate `envkey` from `get_data_dir`?

Issue - State: closed - Opened by laserson about 10 years ago - 2 comments

#8 - Add support for Python 3.

Pull Request - State: closed - Opened by timodonnell about 10 years ago - 6 comments

#7 - Adding a check for file exists

Pull Request - State: closed - Opened by tavinathanson about 10 years ago - 1 comment

#6 - Test database creation

Pull Request - State: closed - Opened by iskandr about 10 years ago

#5 - adding API to README

Pull Request - State: closed - Opened by iskandr over 10 years ago

#4 - Add Travis Tests

Pull Request - State: closed - Opened by rocky over 10 years ago - 1 comment

#3 - Should the decompress be set to test_fetch_decompress test/test_download.py ?

Issue - State: closed - Opened by rocky over 10 years ago - 3 comments

#2 - Changing requires to install_requires, as that's the setuptools argument

Pull Request - State: closed - Opened by tavinathanson over 10 years ago

#1 - Package and import cleanup

Pull Request - State: closed - Opened by arahuja over 10 years ago

GitHub / openvax/datacache issues and pull requests