Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / opentreeoflife/opentree issues and pull requests

#1351 - dates fixed

Pull Request - State: closed - Opened by mtholder 12 days ago

#1350 - stats

Pull Request - State: closed - Opened by mtholder 12 days ago

#1349 - about and download missing for current synthtree (15.1)

Issue - State: closed - Opened by snacktavish 3 months ago - 7 comments

#1348 - missing taxon message suggestion

Issue - State: open - Opened by mtholder 6 months ago

#1347 - suggestions for feedback page

Issue - State: open - Opened by mtholder 6 months ago

#1345 - setting examplars causes unwanted scrolling.

Issue - State: open - Opened by mtholder 6 months ago - 1 comment

#1344 - Collections metadata confusion

Issue - State: open - Opened by snacktavish 7 months ago - 1 comment
Labels: phylesystem batch operation

#1342 - Accept matches button disappears

Issue - State: open - Opened by snacktavish 8 months ago

#1341 - Automatch more otus

Pull Request - State: closed - Opened by jimallman 8 months ago - 3 comments

#1340 - default tree name

Issue - State: open - Opened by snacktavish 9 months ago
Labels: enhancement

#1339 - Smarter DOI lookup (improved)

Pull Request - State: closed - Opened by jimallman 9 months ago

#1338 - Restore the '.json' extension to trigger download

Pull Request - State: closed - Opened by jimallman 9 months ago

#1337 - Bulk TNRS sorting not working

Issue - State: open - Opened by snacktavish 9 months ago

#1336 - Fix collection Save Copy

Pull Request - State: closed - Opened by jimallman 9 months ago - 2 comments

#1335 - Update API docs to include tree collections

Issue - State: open - Opened by jimallman 10 months ago

#1334 - Fix collection download

Pull Request - State: closed - Opened by jimallman 10 months ago

#1333 - Branch length time units get incorrectly stored

Issue - State: open - Opened by snacktavish 11 months ago

#1332 - Improved metadata description text

Pull Request - State: closed - Opened by jimallman 12 months ago

#1331 - Fix production-curation URLs

Pull Request - State: closed - Opened by jimallman 12 months ago - 1 comment

#1330 - Force curation links to production base URL

Pull Request - State: closed - Opened by jimallman 12 months ago

#1329 - Orphaned commits on development - DO NOT MERGE

Pull Request - State: open - Opened by snacktavish about 1 year ago

#1328 - Staging

Pull Request - State: closed - Opened by snacktavish about 1 year ago

#1327 - Conflict with source tree2

Pull Request - State: closed - Opened by snacktavish about 1 year ago - 1 comment

#1326 - Get dev and master aligned

Pull Request - State: closed - Opened by snacktavish about 1 year ago

#1325 - Update and restore PhyloPic features in synth-tree viewer

Issue - State: open - Opened by jimallman about 1 year ago
Labels: Pyramid webapps

#1324 - Clean up layout of custom-synth web pages

Issue - State: open - Opened by jimallman about 1 year ago

#1323 - Smarter DOI lookup

Pull Request - State: closed - Opened by jimallman over 1 year ago - 2 comments

#1322 - More granular search

Issue - State: open - Opened by snacktavish over 1 year ago

#1321 - "Look up doi" button weirdness

Issue - State: open - Opened by snacktavish over 1 year ago - 6 comments

#1320 - Some AJAX errors hidden in Chrome (JSON payload ignored)

Issue - State: closed - Opened by jimallman over 1 year ago - 5 comments

#1319 - Fix outbound links

Pull Request - State: closed - Opened by jimallman over 1 year ago

#1317 - Add <pre> to allowed tags for version notes.

Pull Request - State: closed - Opened by jimallman over 1 year ago - 1 comment

#1316 - In study-study conflict, links go to synth rather than alternative study

Issue - State: closed - Opened by snacktavish over 1 year ago - 4 comments

#1315 - new stats applied to a branch where tree's repo currently is

Pull Request - State: closed - Opened by mtholder over 1 year ago

#1312 - Expect the curation app base URL in webapp config

Pull Request - State: closed - Opened by jimallman over 1 year ago - 7 comments

#1311 - link to gitter from our contact page needs to be updated

Issue - State: closed - Opened by mtholder over 1 year ago

#1309 - link outs from tree browser to OneZoom broken

Issue - State: closed - Opened by mtholder over 1 year ago - 2 comments

#1308 - File download from curator not working

Issue - State: open - Opened by mtholder over 1 year ago - 1 comment

#1307 - Bump minimatch from 3.0.4 to 3.1.2 in /curator/static/js/tnrs

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, javascript

#1306 - Conflict with source tree2

Pull Request - State: closed - Opened by jimallman over 1 year ago - 6 comments

#1305 - Smarter collection refresh

Pull Request - State: closed - Opened by jimallman over 1 year ago

#1304 - Use a simpler scheme for safe element IDs

Pull Request - State: closed - Opened by jimallman almost 2 years ago - 3 comments

#1303 - Allow reusing taxon names

Pull Request - State: closed - Opened by jimallman almost 2 years ago - 1 comment

#1302 - Should we always mint a new ID when creating a tree or study?

Issue - State: open - Opened by jimallman almost 2 years ago - 5 comments

#1301 - Does collection refresh fail to detect existing trees?

Issue - State: open - Opened by jimallman almost 2 years ago - 1 comment

#1299 - Collections "save a copy" doesn't work

Issue - State: open - Opened by snacktavish almost 2 years ago - 4 comments

#1298 - Bump jszip from 3.7.1 to 3.8.0 in /curator/static/js/tnrs

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, javascript

#1297 - curator profile page loading seems too slow

Issue - State: open - Opened by mtholder almost 2 years ago

#1296 - Is the branch rotation in the tree viewer of the curator deterministic?

Issue - State: open - Opened by mtholder almost 2 years ago - 1 comment

#1295 - Naming of mrcaottAottB nodes

Issue - State: open - Opened by bredelings almost 2 years ago

#1294 - Show conflict between a study tree and a tree from another study.

Issue - State: open - Opened by bredelings almost 2 years ago
Labels: enhancement

#1292 - fix of misleading error message on misconfigure

Pull Request - State: closed - Opened by mtholder almost 2 years ago - 1 comment

#1291 - In the conflict analysis, unnamed nodes look like `OTT: {mrcaottXottY}`

Issue - State: open - Opened by bredelings almost 2 years ago - 1 comment

#1290 - Update taxonomy browser to python3

Pull Request - State: closed - Opened by jimallman almost 2 years ago

#1289 - Taxonomy browser is broken in latest deployment

Issue - State: closed - Opened by jimallman almost 2 years ago - 5 comments

#1288 - Curator blocks taxon addition of existing names

Issue - State: closed - Opened by snacktavish about 2 years ago - 2 comments

#1287 - Bump jwcrypto from 0.9.1 to 1.4

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies, python

#1286 - Disable Treebase import [HOLD THIS and monitor TreeBASE]

Pull Request - State: open - Opened by jimallman about 2 years ago - 2 comments

#1285 - Issue on new development website on the Add Study page

Issue - State: closed - Opened by laurenholdermanphylo over 2 years ago - 7 comments

#1284 - Time to remove our "import from TREEBASE" option when creating a study?

Issue - State: open - Opened by jimallman over 2 years ago - 3 comments

#1283 - Fix delete collection button

Pull Request - State: closed - Opened by jimallman over 2 years ago - 1 comment

#1282 - data license info

Pull Request - State: closed - Opened by snacktavish over 2 years ago - 5 comments

#1281 - Fix for frozen bulk-TNRS w/o trailing slash

Pull Request - State: closed - Opened by jimallman over 2 years ago - 1 comment

#1280 - pinning

Pull Request - State: closed - Opened by mtholder over 2 years ago - 1 comment

#1279 - Smarter CSV parsing

Pull Request - State: closed - Opened by jimallman over 2 years ago - 5 comments
Labels: close this?

#1278 - Upload pre-mapped OTUs

Issue - State: open - Opened by snacktavish over 2 years ago - 8 comments

#1277 - Bump minimist from 1.2.5 to 1.2.6 in /curator/static/js/tnrs

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#1276 - Bump cached-path-relative from 1.0.2 to 1.1.0 in /curator/static/js/tnrs

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#1275 - Can't create new study

Issue - State: closed - Opened by snacktavish almost 3 years ago - 2 comments

#1274 - Update all DOI-as-URL values in phylesystem?

Issue - State: open - Opened by jimallman almost 3 years ago - 1 comment
Labels: phylesystem batch operation

#1273 - Bump jszip from 3.1.3 to 3.7.0 in /curator/static/js/tnrs

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies

#1272 - Replace dead link to original grant proposal

Issue - State: open - Opened by jimallman about 3 years ago - 1 comment

#1271 - Update all visible download links to use HTTPS

Issue - State: open - Opened by jimallman about 3 years ago

#1270 - Bump path-parse from 1.0.6 to 1.0.7 in /curator/static/js/tnrs

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#1269 - ERROR loading details for this conflicting tree!

Issue - State: closed - Opened by snacktavish over 3 years ago - 2 comments

#1268 - Add rate limiting to APIs

Issue - State: open - Opened by jimallman over 3 years ago

#1267 - new stats

Pull Request - State: closed - Opened by mtholder over 3 years ago

#1266 - Noob question: What does the taxon label "mrcaott" mean?

Issue - State: closed - Opened by cleopatra17 over 3 years ago - 2 comments

#1265 - Custom curator url for webapp-only installation

Pull Request - State: open - Opened by kcranston over 3 years ago - 2 comments

#1264 - Auto-accept exact matches and synonyms

Pull Request - State: closed - Opened by jimallman over 3 years ago - 2 comments

#1263 - Import TNRS nameset in curation

Pull Request - State: closed - Opened by jimallman over 3 years ago - 4 comments

#1262 - OTU mapping fixes

Pull Request - State: closed - Opened by jimallman over 3 years ago - 4 comments

#1257 - Bump elliptic from 6.5.3 to 6.5.4 in /curator/static/js/tnrs

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#1235 - Console message cleanup

Pull Request - State: closed - Opened by jimallman over 4 years ago

#1210 - Fix "dubious data" warning: add "ott" prefix to OTT_VERSION

Pull Request - State: closed - Opened by bredelings about 5 years ago - 1 comment

#1200 - Bulk TNRS main.json not in output folder

Issue - State: open - Opened by snacktavish over 5 years ago - 2 comments

#1185 - Fix link to OTT info

Pull Request - State: closed - Opened by jimallman over 5 years ago

#1182 - Clear duplicate DOIs list if check throws an error

Pull Request - State: closed - Opened by jimallman almost 6 years ago

#1181 - Support api utility methods in v3

Pull Request - State: closed - Opened by jimallman almost 6 years ago

#1155 - treat synonyms as exact matches

Issue - State: closed - Opened by mtholder over 6 years ago - 6 comments

#1149 - Suppress bogus error message on main root node

Pull Request - State: closed - Opened by jimallman over 6 years ago