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GitHub / openslide/openslide-python issues and pull requests

#226 - "openslide.lowlevel.OpenSlideUnsupportedFormatError: Unsupported or missing image file" for DICOM image

Issue - State: closed - Opened by markemus almost 2 years ago - 1 comment
Labels: defect

#225 - Missing _convert.cpython-310-darwin.so

Issue - State: closed - Opened by barrettMCW almost 2 years ago - 4 comments
Labels: defect

#224 - Add Python 3.12

Pull Request - State: closed - Opened by bgilbert almost 2 years ago - 1 comment

#223 - Build for Python 3.12

Issue - State: closed - Opened by bgilbert almost 2 years ago - 2 comments
Labels: release

#222 - pre-commit-config: bump versions

Pull Request - State: closed - Opened by bgilbert almost 2 years ago - 1 comment

#221 - workflows: update `actions/checkout` to v4

Pull Request - State: closed - Opened by bgilbert almost 2 years ago - 1 comment

#220 - workflows/dco-report: drop permissions

Pull Request - State: closed - Opened by bgilbert almost 2 years ago - 1 comment

#219 - workflows/dco-report: use bot token

Pull Request - State: closed - Opened by bgilbert almost 2 years ago

#218 - pytest: require 7.0 for `pythonpath` setting

Pull Request - State: closed - Opened by bgilbert about 2 years ago - 1 comment

#217 - Update for release

Pull Request - State: closed - Opened by bgilbert about 2 years ago - 1 comment

#216 - Release 1.3.0

Issue - State: closed - Opened by bgilbert about 2 years ago
Labels: release

#215 - examples/deepzoom: update OpenSeadragon to 4.1.0

Pull Request - State: closed - Opened by bgilbert about 2 years ago - 1 comment

#214 - Drop support for Python 3.7

Pull Request - State: closed - Opened by bgilbert about 2 years ago - 1 comment

#213 - Add DICOM format to docs

Pull Request - State: closed - Opened by bgilbert about 2 years ago - 2 comments

#212 - examples/deepzoom: switch from optparse to argparse

Pull Request - State: closed - Opened by bgilbert about 2 years ago - 1 comment

#211 - lowlevel: add attribute indicating whether a function is available

Pull Request - State: closed - Opened by bgilbert about 2 years ago - 1 comment

#210 - doc: update minimum OpenSlide version for cache customization

Pull Request - State: closed - Opened by bgilbert about 2 years ago - 1 comment

#209 - Support ICC profiles

Pull Request - State: closed - Opened by bgilbert about 2 years ago - 1 comment

#208 - Fix running pytest in root of repo

Pull Request - State: closed - Opened by bgilbert about 2 years ago - 1 comment

#207 - workflows: use latest available Pillow wheel on Windows

Pull Request - State: closed - Opened by bgilbert about 2 years ago - 1 comment

#206 - WSIs appear dark black when I convert SVS files to 10x or lower scale factor

Issue - State: closed - Opened by monjoybme about 2 years ago - 6 comments
Labels: defect

#205 - miniconda & openslide-python; LIBFFI_BASE_7.0

Issue - State: closed - Opened by jonghyunlee1993 about 2 years ago - 1 comment
Labels: defect

#204 - get_thumbnail bug report

Issue - State: closed - Opened by 918938301 about 2 years ago - 3 comments
Labels: defect

#203 - icc profile management added

Pull Request - State: closed - Opened by veyselolgun about 2 years ago - 7 comments

#202 - openslide can not read a file with chinese path

Issue - State: closed - Opened by EachenL about 2 years ago - 2 comments
Labels: defect

#201 - examples/deepzoom: update jQuery and OpenSeadragon

Pull Request - State: closed - Opened by bgilbert about 2 years ago - 1 comment

#200 - examples/deepzoom: do app initialization from a factory function

Pull Request - State: closed - Opened by bgilbert about 2 years ago - 1 comment

#199 - lowlevel: support `libopenslide.so.1` soname

Pull Request - State: closed - Opened by bgilbert about 2 years ago - 1 comment

#198 - OSError: -9

Issue - State: closed - Opened by neu-null about 2 years ago - 2 comments
Labels: defect

#197 - workflows: update to OpenSlide Windows release 20230414

Pull Request - State: closed - Opened by bgilbert over 2 years ago - 1 comment

#196 - pre-commit-config: update isort

Pull Request - State: closed - Opened by bgilbert over 2 years ago - 1 comment

#195 - Possible memory leak with read_region

Issue - State: closed - Opened by brendanofallon over 2 years ago - 2 comments
Labels: defect

#193 - templates: switch to issue forms

Pull Request - State: closed - Opened by bgilbert over 2 years ago - 1 comment

#192 - workflows: update action major versions

Pull Request - State: closed - Opened by bgilbert over 2 years ago - 1 comment

#191 - DNM: build wheels for Python 3.11

Pull Request - State: closed - Opened by bgilbert over 2 years ago - 1 comment

#190 - Add Python 3.11

Pull Request - State: closed - Opened by bgilbert over 2 years ago - 1 comment

#189 - Build for Python 3.11

Issue - State: closed - Opened by bgilbert over 2 years ago - 1 comment
Labels: release

#188 - workflows: build wheels for all OS; python 3.11 support

Pull Request - State: closed - Opened by andreped over 2 years ago - 4 comments

#187 - Precompiled wheels for all operating systems

Issue - State: closed - Opened by andreped over 2 years ago - 7 comments

#186 - Edit .svs Aperio metadata with openslide

Issue - State: closed - Opened by chalbiophysics over 2 years ago - 1 comment

#185 - Artifact

Issue - State: closed - Opened by 464hee over 2 years ago - 5 comments

#183 - Different pixel value when opening same slide on Linux and Windows

Issue - State: open - Opened by loic-lb almost 3 years ago - 2 comments

#180 - workflows: update to OpenSlide Windows release 20220811

Pull Request - State: closed - Opened by bgilbert almost 3 years ago - 1 comment

#179 - Can not import OpenSlideCache

Issue - State: closed - Opened by zhangdan8962 almost 3 years ago - 1 comment

#178 - workflows: update to OpenSlide Windows release 20220806

Pull Request - State: closed - Opened by bgilbert almost 3 years ago - 1 comment

#177 - OSError: incompatible architecture (have 'arm64', need 'x86_64')

Issue - State: closed - Opened by ryanreavette about 3 years ago - 2 comments

#176 - docs: update links

Pull Request - State: closed - Opened by bgilbert about 3 years ago - 1 comment

#175 - workflows: add DCO verification

Pull Request - State: closed - Opened by bgilbert about 3 years ago

#174 - README: drop stray trailing colons in format list

Pull Request - State: closed - Opened by bgilbert about 3 years ago

#173 - Minor fixups for `.txt` removal

Pull Request - State: closed - Opened by bgilbert about 3 years ago

#172 - Clean up license files; point license hyperlinks to OpenSlide website

Pull Request - State: closed - Opened by bgilbert about 3 years ago

#170 - Update for release

Pull Request - State: closed - Opened by bgilbert about 3 years ago

#169 - CHANGELOG: convert to Markdown

Pull Request - State: closed - Opened by bgilbert about 3 years ago

#168 - Update pre-commit-config versions; enable reStructuredText validation

Pull Request - State: closed - Opened by bgilbert about 3 years ago

#167 - Consider switching from setuptools to Poetry

Issue - State: closed - Opened by bgilbert about 3 years ago - 2 comments
Labels: enhancement

#166 - OpenSlideError: Huffman table 0x00 was not defined

Issue - State: closed - Opened by martvanrijthoven about 3 years ago - 2 comments

#165 - convert: process pixels as `u32`; avoid writing back transparent pixels

Pull Request - State: closed - Opened by bgilbert about 3 years ago

#164 - WIP - convert to Poetry and add type hints

Pull Request - State: closed - Opened by jaharkes about 3 years ago - 1 comment

#163 - README: convert to Markdown

Pull Request - State: closed - Opened by bgilbert about 3 years ago

#162 - Drop Python 3.6 support

Pull Request - State: closed - Opened by bgilbert about 3 years ago - 1 comment

#161 - Deprecate python-3.6 support

Issue - State: closed - Opened by jaharkes about 3 years ago - 1 comment

#160 - Release 1.2.0

Issue - State: closed - Opened by bgilbert about 3 years ago
Labels: release

#158 - examples/deepzoom: fix `./deepzoom_tile.py -r` with jinja2 3.x

Pull Request - State: closed - Opened by bgilbert about 3 years ago

#157 - Consider adding type hints

Issue - State: closed - Opened by bgilbert about 3 years ago - 3 comments
Labels: enhancement

#155 - pre-commit: update Black to 22.3.0, blacken-docs to 1.12.1

Pull Request - State: closed - Opened by bgilbert about 3 years ago

#154 - About a reverse of `_get_tile_info` (DeepZoomGenerator)

Issue - State: closed - Opened by alamie about 3 years ago - 1 comment
Labels: invalid

#152 - libopenslide.so.0: cannot open shared object file: No such file or directory

Issue - State: closed - Opened by j-sieger over 3 years ago - 1 comment

#151 - Use find_library to load libopenslide-0.dll for Windows

Pull Request - State: closed - Opened by SachidanandAlle over 3 years ago - 6 comments

#150 - Refactor and fixed find and load OpenSlide library.

Pull Request - State: closed - Opened by ccoulombe over 3 years ago - 4 comments

#149 - How can I read .dat file by openslide?

Issue - State: closed - Opened by yyn10152333 over 3 years ago - 1 comment

#148 - Unable to install openslide-python using pip

Issue - State: closed - Opened by primakovch over 3 years ago - 2 comments

#147 - Is there any Java deepzoom example

Issue - State: closed - Opened by linruicheng1997 over 3 years ago - 1 comment
Labels: invalid

#146 - ImportError: Couldn't locate OpenSlide dylib. Is OpenSlide installed?

Issue - State: closed - Opened by pbeneteau over 3 years ago - 2 comments

#145 - Want to rewrite in Java, need your help!

Issue - State: closed - Opened by linruicheng1997 over 3 years ago - 2 comments
Labels: invalid

#144 - WIP: workflows: build wheels for Linux/macOS

Pull Request - State: closed - Opened by bgilbert almost 4 years ago - 1 comment

#143 - DNM: build 1.1.2 for Python 3.10

Pull Request - State: closed - Opened by bgilbert almost 4 years ago

#142 - Add Python 3.10

Pull Request - State: closed - Opened by bgilbert almost 4 years ago

#141 - Build for Python 3.10

Issue - State: closed - Opened by bgilbert almost 4 years ago - 2 comments
Labels: release

#140 - Update setup.py

Pull Request - State: closed - Opened by shubam34 almost 4 years ago - 1 comment
Labels: invalid

#139 - Update setup.py

Pull Request - State: closed - Opened by arnavbansal2764 almost 4 years ago - 1 comment
Labels: invalid

#136 - DNM: CI test

Pull Request - State: closed - Opened by bgilbert about 4 years ago

#135 - workflows: limit permissions to reading repo contents

Pull Request - State: closed - Opened by bgilbert about 4 years ago

#134 - openslide-tools (dyn) not found in virtual environment

Issue - State: closed - Opened by gabrieldernbach about 4 years ago - 2 comments

#133 - the left and the top parts are missing in the web viewer

Issue - State: closed - Opened by linboqiao about 4 years ago - 1 comment

#132 - delete issue

Issue - State: closed - Opened by linboqiao about 4 years ago

#131 - Unable to install OpenSlide without sudo

Issue - State: closed - Opened by Hryniewska about 4 years ago - 1 comment
Labels: enhancement

#129 - Support OpenSlide cache management API

Pull Request - State: closed - Opened by bgilbert about 4 years ago - 3 comments

#128 - Added openslide cache-prop

Pull Request - State: closed - Opened by lromor about 4 years ago

#127 - Need Help! OSError: [WinError 127] The specified procedure could not be found.

Issue - State: closed - Opened by yuanzhang22 about 4 years ago - 3 comments

#126 - interest in wheel files?

Issue - State: closed - Opened by kaczmarj about 4 years ago - 4 comments

#125 - Use pre-commit hooks to ensure a consistent coding style

Pull Request - State: closed - Opened by jaharkes about 4 years ago - 2 comments