Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / openpharma/mmrm issues and pull requests

#259 - Fitting intercept only model

Issue - State: closed - Opened by kkmann over 1 year ago
Labels: bug

#258 - Fix documentation error in spatial exponential covariance function

Issue - State: closed - Opened by kkmann over 1 year ago - 3 comments
Labels: bug, documentation, SP1

#257 - [WIP] refactor `h_mmrm_tmb_data()`

Pull Request - State: closed - Opened by kkmann over 1 year ago - 4 comments

#256 - Add Matérn covariance function

Issue - State: open - Opened by kkmann over 1 year ago - 2 comments
Labels: enhancement, blocked

#255 - modularize `h_mmrm_tmb_data()`

Issue - State: closed - Opened by kkmann over 1 year ago - 2 comments
Labels: internals

#254 - [WIP] implementing predict.mmrm_tmb()

Pull Request - State: closed - Opened by kkmann over 1 year ago - 18 comments
Labels: enhancement

#253 - Add tests for 'fitted()' method

Issue - State: closed - Opened by kkmann over 1 year ago - 4 comments
Labels: good first issue, help wanted, SP2

#252 - update model.frame and with functionality

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 4 comments

#251 - Alternative link functions?

Issue - State: closed - Opened by wlandau over 1 year ago - 3 comments
Labels: enhancement

#250 - use pseudo inverse squareroot on transformed x

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 1 comment

#249 - potential update following paper suggest

Pull Request - State: closed - Opened by clarkliming over 1 year ago

#248 - update question about brl

Pull Request - State: closed - Opened by clarkliming over 1 year ago

#247 - add tidy() and glance() methods

Issue - State: closed - Opened by Generalized over 1 year ago - 7 comments
Labels: enhancement, SP5

#246 - [Hard to reproduce] different results obtained from repeated `mmrm()` invocation

Issue - State: closed - Opened by danielinteractive over 1 year ago - 13 comments
Labels: discussion

#245 - Add reports to pkgdown documentation

Pull Request - State: closed - Opened by walkowif over 1 year ago - 2 comments

#244 - 219 confirmation on large tp

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 4 comments

#243 - `emmeans()` fails when covariates are transformed in the model formula

Issue - State: closed - Opened by danielinteractive over 1 year ago - 1 comment
Labels: bug, SP5, priority

#240 - Fix pkgdown workflow

Pull Request - State: closed - Opened by walkowif over 1 year ago - 2 comments

#239 - 220 time as factor

Pull Request - State: closed - Opened by danleibovitz over 1 year ago - 2 comments

#238 - fix na errors

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 2 comments

#237 - Be careful not to allow any other `na.action` option besides `na.omit()`

Issue - State: closed - Opened by kzkzmr over 1 year ago - 1 comment
Labels: bug, SP2, devops

#236 - 230 satterthwaite

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 2 comments

#235 - Pkgdown dropdowns

Pull Request - State: closed - Opened by cicdguy over 1 year ago - 4 comments

#234 - Updates to manual

Pull Request - State: closed - Opened by danjamstat over 1 year ago - 1 comment

#233 - Triggering doc. push to gh-pages

Pull Request - State: closed - Opened by arkadiuszbeer over 1 year ago - 2 comments

#232 - Avoid the need to recalculate any Cholesky factors for normalized residuals

Issue - State: closed - Opened by danielinteractive over 1 year ago
Labels: SP5, devops, C++

#231 - Add `tidymodels` to documentation

Issue - State: closed - Opened by danielinteractive over 1 year ago - 7 comments
Labels: documentation, SP3

#230 - Satterthwaite degree of freedom for Sandwich Estimator

Issue - State: closed - Opened by clarkliming over 1 year ago - 1 comment
Labels: SP5, discussion

#229 - Raise errors as warnings to avoid capture and re-emission of errors during fit

Issue - State: open - Opened by dgkf over 1 year ago - 1 comment
Labels: enhancement, discussion

#228 - use `roxytypes` and `roxylint` packages

Issue - State: open - Opened by dgkf over 1 year ago - 6 comments
Labels: documentation, SP5, devops

#227 - Consider adding support for multiple imputation (incl. pooling results for inference via emmeans)

Issue - State: closed - Opened by Generalized over 1 year ago - 2 comments
Labels: enhancement

#226 - New vignette with a methodological introduction to MMRMs

Pull Request - State: closed - Opened by chstock over 1 year ago - 5 comments

#225 - Refactor to use `cov_struct` for covariance structure

Pull Request - State: closed - Opened by dgkf over 1 year ago - 2 comments

#224 - between-within degree of freedom

Issue - State: closed - Opened by clarkliming over 1 year ago - 21 comments
Labels: enhancement, SP5

#223 - update branch

Pull Request - State: closed - Opened by chstock over 1 year ago - 3 comments

#222 - Fix publication references

Issue - State: closed - Opened by chstock over 1 year ago - 8 comments
Labels: bug, documentation, SP1

#221 - Warning when passing `optimizer` through `mmrm` to `h_get_optimizers`

Issue - State: closed - Opened by dgkf over 1 year ago - 7 comments
Labels: bug

#220 - Clarify in documentation that non-spatial covariance structure needs factor variable

Issue - State: closed - Opened by danielinteractive over 1 year ago - 1 comment
Labels: documentation, SP1

#218 - Allowing interface for covariance outside of formula to support tidymodels interop

Issue - State: closed - Opened by dgkf over 1 year ago - 6 comments
Labels: enhancement

#217 - Unstructured covariance when time is continuous

Issue - State: closed - Opened by DanChaltiel over 1 year ago - 4 comments
Labels: enhancement

#216 - `PROC MIXED` Repeated Measures Variable Reordering

Pull Request - State: closed - Opened by PhilBoileau over 1 year ago - 4 comments

#215 - add empirical and jackknife covariance

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 9 comments

#214 - Adding tidymodels support

Pull Request - State: closed - Opened by dgkf over 1 year ago - 14 comments

#213 - add spatial exponential KR

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 4 comments

#212 - Add `latest-release` to pkgdown website as default

Issue - State: closed - Opened by danielinteractive almost 2 years ago - 5 comments
Labels: documentation, SP2

#211 - add covrpage vignette to communicate package testing health

Pull Request - State: closed - Opened by yonicd almost 2 years ago - 16 comments

#210 - residuals S3 method for mmrm_tmb

Pull Request - State: closed - Opened by danjamstat almost 2 years ago - 10 comments

#209 - `covr::package_coverage()` build fail on Windows

Issue - State: closed - Opened by yonicd almost 2 years ago - 9 comments
Labels: discussion

#208 - CSH Covariance Matrix Inference Benchmarking

Pull Request - State: closed - Opened by PhilBoileau almost 2 years ago - 6 comments

#207 - 206: skip flaky test on CRAN

Pull Request - State: closed - Opened by danielinteractive almost 2 years ago

#206 - Skip flaky test on CRAN

Issue - State: closed - Opened by danielinteractive almost 2 years ago
Labels: SP1, priority

#205 - 204: fix check notes as much as possible [skip vbump]

Pull Request - State: closed - Opened by danielinteractive almost 2 years ago

#204 - Address CRAN check notes

Issue - State: closed - Opened by danielinteractive almost 2 years ago
Labels: SP2, priority

#203 - 202: Polishing before CRAN release [skip vbump]

Pull Request - State: closed - Opened by danielinteractive almost 2 years ago

#202 - Add new features to package documentation

Issue - State: closed - Opened by danielinteractive almost 2 years ago - 2 comments
Labels: SP5, priority

#201 - fix warnings

Pull Request - State: closed - Opened by clarkliming almost 2 years ago

#200 - allow levels to be kept

Pull Request - State: closed - Opened by clarkliming almost 2 years ago

#199 - Add Kenward-Roger implementation for spatial covariance structures

Issue - State: closed - Opened by danielinteractive almost 2 years ago - 1 comment
Labels: enhancement, SP5

#198 - Clean up C++ to eliminate warnings

Issue - State: closed - Opened by danielinteractive almost 2 years ago
Labels: SP2, devops

#197 - 181: Add Satterthwaite vignette

Pull Request - State: closed - Opened by danielinteractive almost 2 years ago

#196 - update contributing guide

Pull Request - State: closed - Opened by clarkliming almost 2 years ago

#195 - update mmrm_control

Pull Request - State: closed - Opened by clarkliming almost 2 years ago - 4 comments

#194 - Skip error-prone tests on Fedora + Clang

Pull Request - State: closed - Opened by dgkf almost 2 years ago - 2 comments

#193 - Use automatic differentiation to calculate the Jacobian for Satterthwaite

Issue - State: closed - Opened by danielinteractive almost 2 years ago
Labels: SP5, devops, C++

#192 - Avoid macro definitions by resolving conflicts between Rcpp and TMB

Issue - State: open - Opened by clarkliming almost 2 years ago
Labels: SP5, devops, C++

#191 - Add `residuals()` method for `mmrm_tmb`

Issue - State: closed - Opened by danielinteractive almost 2 years ago - 4 comments
Labels: enhancement, SP5

#190 - Add `simulate()` method for `mmrm_tmb` (or `mmrm` if we need adjusted cov matrix of fixed effects)

Issue - State: closed - Opened by danielinteractive almost 2 years ago - 18 comments
Labels: enhancement, SP5

#189 - Add `predict()` method for `mmrm_tmb`

Issue - State: closed - Opened by danielinteractive almost 2 years ago - 8 comments
Labels: enhancement, SP8, C++

#188 - Add `control` argument to `mmrm()` interface to simplify it

Issue - State: closed - Opened by danielinteractive almost 2 years ago - 7 comments
Labels: enhancement, SP3

#187 - Add Option/Function for Relative Change Calculation?

Issue - State: closed - Opened by changjosh92 almost 2 years ago - 2 comments
Labels: enhancement

#186 - Fix CRAN check problems

Issue - State: closed - Opened by danielinteractive almost 2 years ago - 12 comments
Labels: bug, SP2, priority

#182 - implementations of KR

Pull Request - State: closed - Opened by clarkliming almost 2 years ago - 11 comments

#181 - add degree of freedom for Satterthwaite vignettes

Issue - State: closed - Opened by clarkliming almost 2 years ago
Labels: documentation, SP3

#180 - implement KR1 method for covariance calculation/testing

Issue - State: closed - Opened by clarkliming almost 2 years ago - 2 comments
Labels: enhancement, SP13

#174 - Consider nested covariance structures?

Issue - State: open - Opened by danielinteractive almost 2 years ago - 13 comments
Labels: discussion

#172 - Shall we cache the `lower_chol` for subjects so that it will not be re-calculated?

Issue - State: closed - Opened by clarkliming almost 2 years ago - 3 comments
Labels: devops, discussion

#170 - Warn when visit levels are dropped / consider flag to include all levels

Issue - State: closed - Opened by clarkliming almost 2 years ago - 5 comments
Labels: enhancement, SP2

#169 - create s3 method for {multilevelmod}

Issue - State: closed - Opened by yonicd almost 2 years ago - 2 comments
Labels: enhancement, SP5

#165 - 93 mmrm review comparison

Pull Request - State: closed - Opened by BrianLang almost 2 years ago - 25 comments

#164 - [feature request] add likelihood ratio test

Issue - State: open - Opened by clarkliming almost 2 years ago - 8 comments
Labels: enhancement, discussion

#162 - Add Imports explanations to contributing guide

Issue - State: closed - Opened by danielinteractive almost 2 years ago - 5 comments
Labels: SP1, devops, discussion

#156 - Improve use of optimizers in general, incl. refitting, default choice, etc.

Issue - State: closed - Opened by kkmann almost 2 years ago - 2 comments
Labels: discussion

#153 - Good explanation of name + G/R side random effects

Issue - State: closed - Opened by kkmann almost 2 years ago - 9 comments
Labels: documentation, SP3

#149 - add basic explorations of KR df

Pull Request - State: closed - Opened by clarkliming almost 2 years ago - 7 comments

#110 - Improve handling of `visits_zero_inds` and `coordinates`

Issue - State: closed - Opened by clarkliming about 2 years ago - 2 comments
Labels: enhancement, SP8, devops, C++

#93 - Comparison with other implementations / packages

Issue - State: closed - Opened by BrianLang about 2 years ago - 24 comments
Labels: documentation, good first issue, SP3, priority

#67 - Design for Type II and Type III tests a la `car::Anova()`

Issue - State: closed - Opened by danielinteractive about 2 years ago - 14 comments
Labels: SP8

#53 - Robust sandwich estimator

Issue - State: closed - Opened by danielinteractive over 2 years ago
Labels: enhancement, SP8