Ecosyste.ms: Issues

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GitHub / openpharma/mmrm issues and pull requests

#363 - couple of polishing touches

Pull Request - State: closed - Opened by danielinteractive 11 months ago - 1 comment

#361 - Improve formatting of `?mmrm_control` details

Issue - State: closed - Opened by danielinteractive 12 months ago
Labels: documentation, SP1

#360 - Make it possible to query `optimizer` via `component`

Issue - State: closed - Opened by danielinteractive 12 months ago
Labels: enhancement, SP1

#359 - Revert workflow branch to `main`

Pull Request - State: closed - Opened by cicdguy 12 months ago - 2 comments

#358 - fix make_unique

Pull Request - State: closed - Opened by clarkliming 12 months ago - 1 comment

#357 - Update DESCRIPTION

Pull Request - State: closed - Opened by yonicd 12 months ago - 2 comments

#354 - try to work without std::make_unique [skip vbump]

Pull Request - State: closed - Opened by danielinteractive about 1 year ago - 2 comments

#353 - 343: fix more tests hopefully [skip vbump]

Pull Request - State: closed - Opened by danielinteractive about 1 year ago - 1 comment

#351 - 343: Fix CRAN problems

Pull Request - State: closed - Opened by danielinteractive about 1 year ago - 1 comment

#350 - clean up

Pull Request - State: closed - Opened by clarkliming about 1 year ago

#349 - use glimmix instead of mixed

Pull Request - State: closed - Opened by clarkliming about 1 year ago - 1 comment

#348 - update vignettes

Pull Request - State: closed - Opened by clarkliming about 1 year ago - 3 comments

#347 - [skip vbump] 343: Prepare 0.3 release

Pull Request - State: closed - Opened by danielinteractive about 1 year ago - 1 comment

#346 - 342: Add predict template for tidymodels

Pull Request - State: closed - Opened by danielinteractive about 1 year ago - 4 comments

#345 - explore the possibility of using sandwich method to obtain the prediction sd

Issue - State: open - Opened by clarkliming about 1 year ago - 1 comment
Labels: enhancement

#344 - DOC: Add missing spatial exponential function name

Pull Request - State: closed - Opened by ElDeveloper about 1 year ago

#343 - Prepare 0.3 release

Issue - State: closed - Opened by danielinteractive about 1 year ago - 3 comments
Labels: priority

#342 - Predict template for tidymodels

Issue - State: closed - Opened by yonicd about 1 year ago - 4 comments
Labels: enhancement, SP2, priority

#341 - update pkgdown

Pull Request - State: closed - Opened by clarkliming about 1 year ago - 1 comment

#340 - update documentation

Pull Request - State: closed - Opened by clarkliming about 1 year ago - 3 comments

#339 - Double check the combination of Satterthwaite and empirical cov estimators

Issue - State: closed - Opened by danielinteractive about 1 year ago - 2 comments
Labels: SP2, priority

#338 - Add formatting of sim results

Pull Request - State: closed - Opened by danielinteractive about 1 year ago - 1 comment

#337 - Need to improve documentation of covariance estimators significantly

Issue - State: closed - Opened by Generalized about 1 year ago - 4 comments
Labels: documentation, SP3

#336 - Clean up the "Articles" dropdown menu

Issue - State: closed - Opened by danielinteractive about 1 year ago - 1 comment
Labels: documentation

#335 - 331: clean up MacOS clang compiler warnings

Pull Request - State: closed - Opened by danielinteractive about 1 year ago - 1 comment

#334 - Subsequent emmeans call does not work when transformations are in formula

Issue - State: closed - Opened by lang-benjamin about 1 year ago - 2 comments
Labels: bug

#333 - Update maintainer list for CRAN Status Monitor

Pull Request - State: closed - Opened by cicdguy about 1 year ago - 1 comment

#332 - Add CRAN Status Monitor

Pull Request - State: closed - Opened by cicdguy about 1 year ago - 1 comment

#331 - Clean up C++ compiler warnings

Issue - State: closed - Opened by danielinteractive about 1 year ago - 4 comments
Labels: priority, devops, C++

#330 - Adding `model.matrix()` and `terms()` methods

Pull Request - State: closed - Opened by ddsjoberg about 1 year ago - 5 comments

#329 - update from main to resolove filename issue

Pull Request - State: closed - Opened by yonicd about 1 year ago

#328 - Replicate proc mixed with empiracal and ddfm = betwithin

Issue - State: closed - Opened by Dannyzhd about 1 year ago - 2 comments
Labels: enhancement

#327 - Replicate SAS Proc Mixed in MMRM

Issue - State: closed - Opened by PD710 about 1 year ago - 2 comments

#325 - Tidiers

Pull Request - State: closed - Opened by yonicd about 1 year ago - 19 comments

#324 - Add additional methods

Issue - State: closed - Opened by ddsjoberg about 1 year ago - 2 comments
Labels: enhancement

#323 - add checks of h_mmrm_tmb_check_conv

Pull Request - State: closed - Opened by clarkliming about 1 year ago - 1 comment

#322 - Tests fail on Mac M1+

Issue - State: closed - Opened by danielinteractive about 1 year ago - 15 comments
Labels: bug, priority

#321 - Rename un_kenwardroger<linear>.csv to un_kenwardroger_linear_.csv

Pull Request - State: closed - Opened by danleibovitz about 1 year ago - 3 comments

#320 - File name with '<>' causes impasse with Windows git

Issue - State: closed - Opened by danleibovitz about 1 year ago - 3 comments
Labels: bug

#319 - singular hessian / theta vcov

Issue - State: closed - Opened by clarkliming about 1 year ago
Labels: good first issue, SP1

#318 - validate the fit object

Pull Request - State: closed - Opened by clarkliming about 1 year ago - 2 comments

#317 - cache the vignette results

Pull Request - State: closed - Opened by clarkliming about 1 year ago - 1 comment

#316 - add integration tests with SAS

Pull Request - State: closed - Opened by clarkliming about 1 year ago - 1 comment

#315 - Error reported when summary(fit)

Issue - State: closed - Opened by Dominic7227 about 1 year ago - 4 comments
Labels: bug

#313 - 311: Catch divergence errors

Pull Request - State: closed - Opened by danielinteractive about 1 year ago - 1 comment

#311 - Certain errors from the function or optimizer evaluation should be caught

Issue - State: closed - Opened by danielinteractive about 1 year ago - 3 comments
Labels: bug, SP2

#310 - Speed up package build by pre-compiling the methods review vignette

Issue - State: closed - Opened by danielinteractive about 1 year ago
Labels: help wanted, SP2, priority, devops

#309 - 308 simulate vig

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 3 comments

#308 - Amend prediction vignette with approach / algorithm for `simulate()` method

Issue - State: closed - Opened by danielinteractive over 1 year ago - 1 comment
Labels: SP3, priority

#307 - return covariance for each subject

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 3 comments

#306 - return (conditional) covariance matrix in `predict` function

Issue - State: closed - Opened by clarkliming over 1 year ago - 4 comments

#305 - remove deprecated functions

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 1 comment

#304 - check formula on dots

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 1 comment

#303 - Contribute `mmrm` examples to `CAMIS` repository

Issue - State: open - Opened by danielinteractive over 1 year ago - 14 comments
Labels: documentation, SP5

#302 - clean up code

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 1 comment

#301 - clean up duplicate template

Issue - State: closed - Opened by clarkliming over 1 year ago

#300 - SAS Proc Mixed: random element

Issue - State: open - Opened by WouterMpublic over 1 year ago - 10 comments
Labels: enhancement

#299 - remove remote field in description

Issue - State: closed - Opened by clarkliming over 1 year ago
Labels: good first issue

#298 - removal of deprecated function

Issue - State: closed - Opened by clarkliming over 1 year ago - 1 comment
Labels: good first issue, SP1

#297 - use autodiff for Satterthwaite

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 1 comment

#296 - 190 simulate method

Pull Request - State: closed - Opened by danielinteractive over 1 year ago - 22 comments

#295 - `make_unique` is a function in std since C++14

Issue - State: closed - Opened by fenguoerbian over 1 year ago - 3 comments
Labels: bug

#294 - 272 reduce replicated

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 1 comment

#293 - formula not parsing data object when formula is y~.

Issue - State: closed - Opened by yonicd over 1 year ago - 21 comments
Labels: bug

#292 - allow covariance to be formula

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 2 comments

#291 - covariance object not able to convert to cov_terms when using tidymodels

Issue - State: closed - Opened by yonicd over 1 year ago - 3 comments
Labels: bug

#290 - simplify objective function

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 1 comment

#289 - allow NA in data for prediction; order preserved

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 1 comment

#288 - add test for fitted against gls

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 1 comment

#286 - add messages about KR linear

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 2 comments

#285 - Make a note about `Kenward-Roger-Linear` in `mmrm_control`

Issue - State: closed - Opened by henrikibster over 1 year ago - 3 comments
Labels: documentation, SP1

#284 - Add obsmargin like option from SAS

Issue - State: closed - Opened by henrikibster over 1 year ago - 1 comment
Labels: enhancement

#283 - Explore whether we could add integration tests for `predict` by comparing with SAS `outp/outpm` options

Issue - State: closed - Opened by henrikibster over 1 year ago - 9 comments
Labels: enhancement, SP2

#282 - fix issue of aliased variable

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 3 comments

#281 - predict() returns error message if no outcome data at certain visit for certain group

Issue - State: closed - Opened by nociale over 1 year ago - 5 comments
Labels: bug, priority

#280 - Test fit

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 1 comment

#279 - Blank out non-observed pairs in estimated covariance matrix display

Issue - State: open - Opened by danielinteractive over 1 year ago
Labels: enhancement

#278 - Question on covariance estimation with non-overlapping longitudinal data

Issue - State: closed - Opened by cgsimmons822 over 1 year ago - 5 comments
Labels: question

#277 - Tidymodels docs in readme and intro vignette

Pull Request - State: closed - Opened by yonicd over 1 year ago - 9 comments

#276 - 189 predict lm design

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 24 comments

#275 - DDFM option set to SAT instead of KR in PROC MIXED

Pull Request - State: closed - Opened by PhilBoileau over 1 year ago - 4 comments

#274 - difference in simulation settings

Issue - State: closed - Opened by clarkliming over 1 year ago - 2 comments

#273 - make objective function simpler

Issue - State: closed - Opened by clarkliming over 1 year ago - 1 comment
Labels: SP3, devops, C++

#272 - reduce repeated code in `chol_cache.h` and `derivatives.h`

Issue - State: closed - Opened by clarkliming over 1 year ago - 1 comment
Labels: SP3, devops, C++

#271 - Cannot extract residuals of mmrm model

Issue - State: closed - Opened by Misiura7 over 1 year ago - 2 comments
Labels: bug

#270 - instead of `select_matrix` and matrix calculation, use subset rows

Issue - State: closed - Opened by clarkliming over 1 year ago - 2 comments

#269 - report choleskys in tmb

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 3 comments

#268 - Impact of Missing Data in MMRM Software

Pull Request - State: closed - Opened by PhilBoileau over 1 year ago - 2 comments

#267 - update residual functions

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 3 comments

#266 - fix bug of interaction only models

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 6 comments

#265 - add cholesky cache

Pull Request - State: closed - Opened by clarkliming over 1 year ago - 8 comments

#264 - Save the Cholesky factors from

Issue - State: closed - Opened by clarkliming over 1 year ago

#263 - Add `get_cov_chols(<tbd>, type, theta)` R function to expose C++ cov Cholesky factor

Issue - State: closed - Opened by danielinteractive over 1 year ago - 4 comments
Labels: SP8, priority, C++

#262 - Allow dropping response variable in `model.frame()`

Issue - State: closed - Opened by danielinteractive over 1 year ago - 3 comments

#261 - interaction-only formulas seem to make trouble

Issue - State: closed - Opened by kkmann over 1 year ago - 2 comments
Labels: bug, SP2

#260 - 224 between within degree of freedom

Pull Request - State: closed - Opened by danjamstat over 1 year ago - 14 comments